[package - 131powerpc64le-quarterly][biology/cytoscape] Failed for cytoscape-3.6.1 in build

From: <pkg-fallout_at_FreeBSD.org>
Date: Thu, 08 Jun 2023 04:08:10 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri@FreeBSD.org
Log URL:        https://pkg-status.freebsd.org/foul2/data/131powerpc64le-quarterly/8a413a8dc51c/logs/cytoscape-3.6.1.log
Build URL:      https://pkg-status.freebsd.org/foul2/build.html?mastername=131powerpc64le-quarterly&build=8a413a8dc51c
Log:

=>> Building biology/cytoscape
build started at Thu Jun  8 03:12:55 UTC 2023
port directory: /usr/ports/biology/cytoscape
package name: cytoscape-3.6.1
building for: FreeBSD 131powerpc64le-quarterly-job-22 13.1-RELEASE FreeBSD 13.1-RELEASE powerpc
maintained by: yuri@FreeBSD.org
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=======================<phase: check-sanity   >============================
===>  License LGPL21 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   cytoscape-3.6.1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.19.1_1.pkg
[131powerpc64le-quarterly-job-22] Installing pkg-1.19.1_1...
[131powerpc64le-quarterly-job-22] Extracting pkg-1.19.1_1: .......... done
===>   cytoscape-3.6.1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of cytoscape-3.6.1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License LGPL21 accepted by the user
===> Fetching all distfiles required by cytoscape-3.6.1 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License LGPL21 accepted by the user
===> Fetching all distfiles required by cytoscape-3.6.1 for building
=> SHA256 Checksum OK for FreeBSD-cytoscape-3.6.1-maven-repository.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-parent-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-api-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-impl-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-support-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-gui-distribution-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-app-template-3.6.1_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License LGPL21 accepted by the user
===> Fetching all distfiles required by cytoscape-3.6.1 for building
===>  Extracting for cytoscape-3.6.1
=> SHA256 Checksum OK for FreeBSD-cytoscape-3.6.1-maven-repository.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-parent-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-api-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-impl-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-support-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-gui-distribution-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-app-template-3.6.1_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for cytoscape-3.6.1
===========================================================================
=======================<phase: build-depends  >============================
===>   cytoscape-3.6.1 depends on package: maven363>0 - not found
===>   Installing existing package /packages/All/maven363-3.6.3.pkg
<snip>
 plugins=[]
 catalogs=[]
 catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@1725791f
 readOnly=false
 extension=false
 strict=true
 verbose=true
 debugMode=false
 arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]]
Using java.util.ServiceLoader
[INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build.
[INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build.
[INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]].
[INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]].
[INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,686,194,107,035].
[INFO] Skipped XJC execution. Generated sources were up-to-date.
[INFO] 
[INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
[INFO] Forking Cytoscape Feature Repository 3.6.1
[INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
[INFO] 
[INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] 
[INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ table-browser-impl <<<
[INFO] 
[INFO] 
[INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ table-browser-impl ---
[INFO] 
[INFO] --- maven-install-plugin:2.5.2:install (default-install) @ table-browser-impl ---
[INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/table-browser-impl/target/table-browser-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/table-browser-impl/3.6.1/table-browser-impl-3.6.1.jar
[INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/table-browser-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/table-browser-impl/3.6.1/table-browser-impl-3.6.1.pom
[INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/table-browser-impl/target/table-browser-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/table-browser-impl/3.6.1/table-browser-impl-3.6.1-sources.jar
[INFO] 
[INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ table-browser-impl ---
[INFO] Installing org/cytoscape/table-browser-impl/3.6.1/table-browser-impl-3.6.1.jar
[INFO] Writing OBR metadata
[INFO] 
[INFO] ------------------< org.cytoscape:table-import-impl >-------------------
[INFO] Building Cytoscape Table Import Impl (table-import-impl) 3.6.1  [73/117]
[INFO] -------------------------------[ bundle ]-------------------------------
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ table-import-impl ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 4 resources
[INFO] 
[INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ table-import-impl ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 62 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/table-import-impl/target/classes
[INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/table-import-impl/src/main/java/org/cytoscape/tableimport/internal/ui/OntologyPanelBuilder.java: Some input files use unchecked or unsafe operations.
[INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/table-import-impl/src/main/java/org/cytoscape/tableimport/internal/ui/OntologyPanelBuilder.java: Recompile with -Xlint:unchecked for details.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ table-import-impl ---
[INFO] Not copying test resources
[INFO] 
[INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ table-import-impl ---
[INFO] Not compiling test sources
[INFO] 
[INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ table-import-impl ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ table-import-impl ---
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary for Cytoscape Project POM 3.6.1:
[INFO] 
[INFO] Basic Cytoscape POM Configuration .................. SUCCESS [  1.212 s]
[INFO] Cytoscape API Parent Project POM ................... SUCCESS [ 18.168 s]
[INFO] Cytoscape Documentation Taglets .................... SUCCESS [  9.785 s]
[INFO] Cytoscape Event API (event-api) .................... SUCCESS [ 12.005 s]
[INFO] Cytoscape Model API (model-api) .................... SUCCESS [ 10.819 s]
[INFO] Cytoscape Service API (service-api) ................ SUCCESS [  8.381 s]
[INFO] Cytoscape View Model API (viewmodel-api) ........... SUCCESS [  8.511 s]
[INFO] Cytoscape CI API (ci-api) .......................... SUCCESS [  7.544 s]
[INFO] Cytoscape Work API (work-api) ...................... SUCCESS [  8.947 s]
[INFO] Cytoscape Presentation API (presentation-api) ...... SUCCESS [  9.987 s]
[INFO] Cytoscape Application API (application-api) ........ SUCCESS [  7.781 s]
[INFO] Cytoscape Property API (property-api) .............. SUCCESS [  9.259 s]
[INFO] Cytoscape VizMap API (vizmap-api) .................. SUCCESS [  8.699 s]
[INFO] Cytoscape Session API (session-api) ................ SUCCESS [  7.818 s]
[INFO] Cytoscape Filter API (filter-api) .................. SUCCESS [  6.995 s]
[INFO] Cytoscape IO API (io-api) .......................... SUCCESS [  8.234 s]
[INFO] Cytoscape Core Task API (core-task-api) ............ SUCCESS [  7.878 s]
[INFO] Cytoscape Equations API (equations-api) ............ SUCCESS [  7.946 s]
[INFO] Cytoscape Layout API (layout-api) .................. SUCCESS [  8.737 s]
[INFO] Cytoscape Groups API (group-api) ................... SUCCESS [  7.560 s]
[INFO] Cytoscape Groups API (jobs-api) .................... SUCCESS [  7.134 s]
[INFO] Cytoscape Webservice API (webservice-api) .......... SUCCESS [  6.981 s]
[INFO] Cytoscape Data Source API (datasource-api) ......... SUCCESS [  6.673 s]
[INFO] Cytoscape Command Executor API (command-executor-api) SUCCESS [  6.819 s]
[INFO] Cytoscape App API (app-api) ........................ SUCCESS [ 20.085 s]
[INFO] Cytoscape Work Swing API (work-swing-api) .......... SUCCESS [  7.476 s]
[INFO] Cytoscape Swing Application API (swing-application-api) SUCCESS [  8.101 s]
[INFO] Cytoscape VizMap GUI API (vizmap-gui-api) .......... SUCCESS [  7.150 s]
[INFO] Cytoscape Swing Utility API (swing-util-api) ....... SUCCESS [  8.820 s]
[INFO] Cytoscape Webservice Swing API (webservice-swing-api) SUCCESS [  6.647 s]
[INFO] Cytoscape Swing App API (swing-app-api) ............ SUCCESS [04:18 min]
[INFO] Cytoscape Util API (util-api) ...................... SUCCESS [  6.493 s]
[INFO] Cytoscape API (api-bundle) ......................... SUCCESS [ 10.574 s]
[INFO] Cytoscape Implementation Parent Project POM ........ SUCCESS [ 13.207 s]
[INFO] Cytoscape Equations Impl (equations-impl) .......... SUCCESS [ 10.969 s]
[INFO] Cytoscape Model Impl Parent (model-impl-parent) .... SUCCESS [ 12.420 s]
[INFO] Cytoscape Model Impl (model-impl) .................. SUCCESS [ 10.755 s]
[INFO] Cytoscape Command Executor Impl (command-executor-impl) SUCCESS [  8.822 s]
[INFO] Cytoscape Ding Impl Parent (ding-impl) ............. SUCCESS [ 12.175 s]
[INFO] Cytoscape Ding View/Presentation Impl (ding-presentation-impl) SUCCESS [ 36.248 s]
[INFO] Cytoscape View Model Impl Parent (viewmodel-impl-parent) SUCCESS [ 13.084 s]
[INFO] Cytoscape View Model Impl (viewmodel-impl) ......... SUCCESS [  7.409 s]
[INFO] Cytoscape Groups Impl (group-impl) ................. SUCCESS [ 14.307 s]
[INFO] Cytoscape Event Impl Parent (event-impl-parent) .... SUCCESS [ 14.198 s]
[INFO] Cytoscape Event Impl (event-impl) .................. SUCCESS [  7.280 s]
[INFO] Cytoscape Filters Impl (filter-impl) ............... SUCCESS [ 10.063 s]
[INFO] Cytoscape Filters 2 Impl (filter2-impl) ............ SUCCESS [ 14.247 s]
[INFO] Cytoscape IO Impl Parent (io-impl-parent) .......... SUCCESS [ 11.843 s]
[INFO] Cytoscape IO Impl (io-impl) ........................ SUCCESS [ 22.997 s]
[INFO] Cytoscape Layout Impl (layout-impl) ................ SUCCESS [  7.397 s]
[INFO] Cytoscape Ding View/Presentation Impl Performance (ding-impl-performance-debug) FAILURE [12:11 min]
[INFO] Cytoscape Editor Impl (editor-impl) ................ SUCCESS [ 12.031 s]
[INFO] Cytoscape Equation Functions Impl (equations-functions-impl) SUCCESS [  9.426 s]
[INFO] Cytoscape GraphML Impl (graphml-impl) .............. SUCCESS [  9.837 s]
[INFO] Cytoscape IO Impl Performance (io-impl-performance)  FAILURE [ 15.233 s]
[INFO] Cytoscape Jobs Impl (jobs-impl) .................... SUCCESS [ 10.781 s]
[INFO] Cytoscape Layout Algorithms Impl (layout-cytoscape-impl) SUCCESS [ 15.134 s]
[INFO] Cytoscape JGraph Layout Impl (layout-jgraph-impl) .. SUCCESS [  8.403 s]
[INFO] Cytoscape Prefuse Layout Impl (layout-prefuse-impl)  SUCCESS [  8.766 s]
[INFO] Cytoscape Linkout Impl (linkout-impl) .............. SUCCESS [  8.355 s]
[INFO] Cytoscape Log Swing Impl (log-swing-impl) .......... SUCCESS [  8.580 s]
[INFO] Cytoscape Manual Layout Impl (manual-layout-impl) .. SUCCESS [  9.626 s]
[INFO] Cytoscape Model Impl Performance Debug (model-impl-performance-debug) FAILURE [  8.963 s]
[INFO] Cytoscape Model Impl Table Performance Debug (model-impl-table-performance-debug) FAILURE [  8.768 s]
[INFO] Cytoscape App Impl (app-impl) ...................... SUCCESS [ 14.579 s]
[INFO] Cytoscape Presentation Impl (presentation-impl) .... SUCCESS [  7.857 s]
[INFO] Cytoscape Property Impl (property-impl) ............ SUCCESS [  7.381 s]
[INFO] Cytoscape Search Impl (search-impl) ................ SUCCESS [  9.540 s]
[INFO] Cytoscape Session Impl (session-impl) .............. SUCCESS [  8.408 s]
[INFO] Cytoscape Swing Utility Impl (swing-util-impl) ..... SUCCESS [  8.373 s]
[INFO] Cytoscape Swing Application Impl (swing-application-impl) SUCCESS [ 37.020 s]
[INFO] Cytoscape Table Browser Impl (table-browser-impl) .. SUCCESS [ 14.745 s]
[INFO] Cytoscape Table Import Impl (table-import-impl) .... FAILURE [04:48 min]
[INFO] Cytoscape VizMap GUI Core Impl (vizmap-gui-core-impl) SKIPPED
[INFO] Cytoscape VizMap GUI Impl (vizmap-gui-impl) ........ SKIPPED
[INFO] Cytoscape VizMap Impl Parent (vizmap-impl-parent) .. SKIPPED
[INFO] Cytoscape VizMap Impl (vizmap-impl) ................ SKIPPED
[INFO] Cytoscape Webservice Impl (webservice-impl) ........ SKIPPED
[INFO] org.cytoscape.work-headless-impl ................... SKIPPED
[INFO] org.cytoscape.work-impl ............................ SKIPPED
[INFO] Cytoscape Work Swing Impl Parent (work-swing-impl-parent) SKIPPED
[INFO] Cytoscape Work Swing Impl (work-swing-impl) ........ SKIPPED
[INFO] Cytoscape Application Impl (application-impl) ...... SKIPPED
[INFO] Cytoscape Datasource Impl (datasource-impl) ........ SKIPPED
[INFO] Cytoscape Support Parent Project POM ............... SKIPPED
[INFO] Cytoscape Launch Framework ......................... SKIPPED
[INFO] CommandLine Provider ............................... SKIPPED
[INFO] Cytoscape GUI Command Line Parser Impl (gui-cmdline-parser-impl) SKIPPED
[INFO] Cytoscape Edge Bundler Impl (edge-bundler-impl) .... SKIPPED
[INFO] Cytoscape Scripting Impl (scripting-impl) .......... SKIPPED
[INFO] Cytoscape Core Task Impl (core-task-impl) .......... SKIPPED
[INFO] Cytoscape Headless Application Impl (headless-application-impl) SKIPPED
[INFO] org.cytoscape.cy-commons-cli ....................... SKIPPED
[INFO] Cytoscape Headless Command Line Parser Impl (headless-cmdline-parser-impl) SKIPPED
[INFO] Cytoscape 3 App Archetypes Parent .................. SKIPPED
[INFO] Cytoscape 3 Archetype - Creates an App providing public API SKIPPED
[INFO] Cytoscape 3 Archetype - Creates an App with a Task . SKIPPED
[INFO] Cytoscape 3 Archetype - Creates a CyAction (menu item) for desktop application SKIPPED
[INFO] Cytoscape 3 Archetype - Creates a Meta-App to install multiple related apps SKIPPED
[INFO] org.cytoscape.integration-test-support ............. SKIPPED
[INFO] Launcher ........................................... SKIPPED
[INFO] StartLevel Assembly ................................ SKIPPED
[INFO] Tasks for Testing .................................. SKIPPED
[INFO] Cytoscape Desktop Application Distribution ......... SKIPPED
[INFO] Cytoscape Third-Party Dependencies (third-party) ... SKIPPED
[INFO] SplashScreen Launcher .............................. SKIPPED
[INFO] Cytoscape Launcher ................................. SKIPPED
[INFO] Splash Updater ..................................... SKIPPED
[INFO] Cytoscape Command Line Provider Implementation ..... SKIPPED
[INFO] Cytoscape Diagnostics .............................. SKIPPED
[INFO] Cytoscape Branding ................................. SKIPPED
[INFO] Cytoscape Application Implementation Metadata ...... SKIPPED
[INFO] Cytoscape GUI-Distribution Integration Test (integration-test) SKIPPED
[INFO] Cytoscape Feature Repository ....................... SKIPPED
[INFO] Cytoscape Karaf Distribution ....................... SKIPPED
[INFO] Distribution ....................................... SKIPPED
[INFO] Cytoscape Project POM .............................. SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time:  33:58 min
[INFO] Finished at: 2023-06-08T03:48:45Z
[INFO] ------------------------------------------------------------------------
[ERROR] Java heap space -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/OutOfMemoryError
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/cytoscape