[package - 131releng-armv7-default][biology/seqwish] Failed for seqwish-0.7.9 in configure
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Date: Fri, 28 Jul 2023 08:20:02 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/ampere3/data/131releng-armv7-default/150bed43bfd4/logs/seqwish-0.7.9.log
Build URL: https://pkg-status.freebsd.org/ampere3/build.html?mastername=131releng-armv7-default&build=150bed43bfd4
Log:
=>> Building biology/seqwish
build started at Fri Jul 28 08:19:56 UTC 2023
port directory: /usr/ports/biology/seqwish
package name: seqwish-0.7.9
building for: FreeBSD 131releng-armv7-default-job-04 13.1-RELEASE-p8 FreeBSD 13.1-RELEASE-p8 1301000 arm
maintained by: yuri@FreeBSD.org
Makefile ident:
Poudriere version: 3.2.8-23-ga7f8d188
Host OSVERSION: 1400089
Jail OSVERSION: 1301000
Job Id: 04
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---Begin OPTIONS List---
===> The following configuration options are available for seqwish-0.7.9:
OPENMP=on: Parallel processing support via OpenMP
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/seqwish/work/.cache HOME=/wrkdirs/usr/ports/biology/seqwish/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/seqwish/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/seqwish/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/seqwish/work/.cache HOME=/wrkdirs/usr/ports/biology/seqwish/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/seqwish/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/seqwish/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fopenmp " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_
INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
CMAKE_BUILD_TYPE="release" OSREL=13.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/seqwish" EXAMPLESDIR="share/examples/seqwish" DATADIR="share/seqwish" WWWDIR="www/seqwish" ETCDIR="etc/seqwish"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/seqwish DOCSDIR=/usr/local/share/doc/seqwish EXAMPLESDIR=/usr/local/share/examples/seqwish WWWDIR=/usr/local/www/seqwish ETCDIR=/usr/local/etc/seqwish
--End SUB_LIST--
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=======================<phase: check-sanity >============================
===> License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> seqwish-0.7.9 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.20.4.pkg
[131releng-armv7-default-job-04] Installing pkg-1.20.4...
[131releng-armv7-default-job-04] Extracting pkg-1.20.4: .......... done
===> seqwish-0.7.9 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of seqwish-0.7.9
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License MIT accepted by the user
===> Fetching all distfiles required by seqwish-0.7.9 for building
===========================================================================
=======================<phase: checksum >============================
===> License MIT accepted by the user
===> Fetching all distfiles required by seqwish-0.7.9 for building
=> SHA256 Checksum OK for seqwish-v0.7.9.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License MIT accepted by the user
===> Fetching all distfiles required by seqwish-0.7.9 for building
===> Extracting for seqwish-0.7.9
=> SHA256 Checksum OK for seqwish-v0.7.9.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for seqwish-0.7.9
===> Applying FreeBSD patches for seqwish-0.7.9 from /usr/ports/biology/seqwish/files
===========================================================================
=======================<phase: build-depends >============================
===> seqwish-0.7.9 depends on file: /usr/local/bin/cmake - not found
===> Installing existing package /packages/All/cmake-core-3.26.1_1.pkg
[131releng-armv7-default-job-04] Installing cmake-core-3.26.1_1...
[131releng-armv7-default-job-04] `-- Installing expat-2.5.0...
[131releng-armv7-default-job-04] `-- Extracting expat-2.5.0: .......... done
[131releng-armv7-default-job-04] `-- Installing jsoncpp-1.9.5...
[131releng-armv7-default-job-04] `-- Extracting jsoncpp-1.9.5: .......... done
[131releng-armv7-default-job-04] `-- Installing libuv-1.46.0...
[131releng-armv7-default-job-04] `-- Extracting libuv-1.46.0: .......... done
[131releng-armv7-default-job-04] `-- Installing rhash-1.4.3...
[131releng-armv7-default-job-04] | `-- Installing gettext-runtime-0.22_1...
[131releng-armv7-default-job-04] | | `-- Installing indexinfo-0.3.1...
[131releng-armv7-default-job-04] | | `-- Extracting indexinfo-0.3.1: .... done
[131releng-armv7-default-job-04] | `-- Extracting gettext-runtime-0.22_1: .......... done
[131releng-armv7-default-job-04] `-- Extracting rhash-1.4.3: .......... done
[131releng-armv7-default-job-04] Extracting cmake-core-3.26.1_1: .......... done
===> seqwish-0.7.9 depends on file: /usr/local/bin/cmake - found
===> Returning to build of seqwish-0.7.9
===========================================================================
=======================<phase: lib-depends >============================
===========================================================================
=======================<phase: configure >============================
===> Configuring for seqwish-0.7.9
===> Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/biology/seqwish/work/.build
-- The C compiler identification is Clang 13.0.0
-- The CXX compiler identification is Clang 13.0.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - failed
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ - broken
CMake Error at /usr/local/share/cmake/Modules/CMakeTestCXXCompiler.cmake:60 (message):
The C++ compiler
"/usr/bin/c++"
is not able to compile a simple test program.
It fails with the following output:
Change Dir: /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/CMakeScratch/TryCompile-4qypbn
Run Build Command(s):/usr/local/bin/cmake -E env VERBOSE=1 /usr/bin/make -f Makefile cmTC_f5194/fast && /usr/bin/make -f CMakeFiles/cmTC_f5194.dir/build.make CMakeFiles/cmTC_f5194.dir/build
Building CXX object CMakeFiles/cmTC_f5194.dir/testCXXCompiler.cxx.o
/usr/bin/c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fopenmp -MD -MT CMakeFiles/cmTC_f5194.dir/testCXXCompiler.cxx.o -MF CMakeFiles/cmTC_f5194.dir/testCXXCompiler.cxx.o.d -o CMakeFiles/cmTC_f5194.dir/testCXXCompiler.cxx.o -c /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/CMakeScratch/TryCompile-4qypbn/testCXXCompiler.cxx
Linking CXX executable cmTC_f5194
/usr/local/bin/cmake -E cmake_link_script CMakeFiles/cmTC_f5194.dir/link.txt --verbose=1
/usr/bin/c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fopenmp CMakeFiles/cmTC_f5194.dir/testCXXCompiler.cxx.o -o cmTC_f5194
ld: error: unable to find library -lomp
c++: error: linker command failed with exit code 1 (use -v to see invocation)
*** Error code 1
Stop.
make[2]: stopped in /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/CMakeScratch/TryCompile-4qypbn
*** Error code 1
Stop.
make[1]: stopped in /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/CMakeScratch/TryCompile-4qypbn
CMake will not be able to correctly generate this project.
Call Stack (most recent call first):
CMakeLists.txt:6 (project)
-- Configuring incomplete, errors occurred!
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/seqwish