From nobody Tue Jul 11 23:00:43 2023 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4R0xDX21Lnz4mmk6 for ; Tue, 11 Jul 2023 23:00:44 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4R0xDX0xj6z4TWK for ; Tue, 11 Jul 2023 23:00:44 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1689116444; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc; bh=YKp8XqVBDnQom5t8HB4Gy+xNPK9/+UbQHepNd6JY4zA=; b=sf1AYeAAGQattF6oXamDl3EqiS0i6BeI07l3KlwQpKfeGd291o9TOQV0ZLwJQLjjGmZyCH tHZ8w4lhWAkjSBKlqEP4hL9avxIofMZ1jBGXayqSker3FVU4FqNEsm/CsndNN4zXE89FYD Q5Uq8WlfUu25TffzN5EfHyxg0NXgzuYbNk/8siScK1gDklapOS2Dmr6/nwhZ3EpKumGlnY RIU94ohYqUkXB6K0qWboTYuMK8MXqSlMmOoR5GjwE0ePstEr4jeYJPOpYY88kh1nnrgxrM ZpPf3ZOXGib9DAKfIqvvbOI6FwDBoP6WLOUoBIHynADlaa8/LmwG+H6Frjpz7w== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1689116444; a=rsa-sha256; cv=none; b=DQ6sM6MGCT+QmQpJjj5PtBt+1UdEVnBfir+ROGFJF2D72Q5PH9+XKEfpp2MlmvdmDei2mE 1ak1yIC9Ro8GY5yrNqvKet775y1sApQUDBhU7gcgclv2p4w0XdP7tIwMo2qG7ustm0EcR8 dVjc22/ElS+20YclP+G8KimcrC+osSKcbuRT9vqO6Ti+ZquPcCJRTAPSCfvUV4JM1TPLDl M9Oz/lyi8qrD/lK6XJ1r84OLxpgYuX67iYO2VcwCLFGPXxWEsZ8IGxo/IVrmjAgqGfzcMt KLlDgdW9oAI53qOuq7lMzUc9klTaTxlbxLOdeRo05YGl1s1jdnVy7D7nRpzHDQ== Received: from beefy4.nyi.freebsd.org (beefy4.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:13]) by mxrelay.nyi.freebsd.org (Postfix) with ESMTP id 4R0xDW6rhfzlY0 for ; Tue, 11 Jul 2023 23:00:43 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from root (uid 0) (envelope-from pkg-fallout@FreeBSD.org) id 8ef by beefy4.nyi.freebsd.org (DragonFly Mail Agent v0.13+ on beefy4.nyi.freebsd.org); Tue, 11 Jul 2023 23:00:43 +0000 To: jwb@FreeBSD.org Subject: [package - 124i386-quarterly][biology/freebayes] Failed for freebayes-1.3.6_2 in configure Cc: pkg-fallout@FreeBSD.org Date: Tue, 11 Jul 2023 23:00:43 +0000 Message-Id: <64addf1b.8ef.6769b829@beefy4.nyi.freebsd.org> From: X-ThisMailContainsUnwantedMimeParts: N List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jwb@FreeBSD.org Log URL: https://pkg-status.freebsd.org/beefy4/data/124i386-quarterly/6777c48daefc/logs/freebayes-1.3.6_2.log Build URL: https://pkg-status.freebsd.org/beefy4/build.html?mastername=124i386-quarterly&build=6777c48daefc Log: =>> Building biology/freebayes build started at Tue Jul 11 23:00:30 UTC 2023 port directory: /usr/ports/biology/freebayes package name: freebayes-1.3.6_2 building for: FreeBSD 124i386-quarterly-job-09 12.4-RELEASE-p3 FreeBSD 12.4-RELEASE-p3 i386 maintained by: jwb@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-23-ga7f8d188 Host OSVERSION: 1400089 Jail OSVERSION: 1204000 Job Id: 09 ---Begin Environment--- SHELL=/bin/csh UNAME_p=i386 UNAME_m=i386 OSVERSION=1204000 UNAME_v=FreeBSD 12.4-RELEASE-p3 UNAME_r=12.4-RELEASE-p3 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-23-ga7f8d188 MASTERMNT=/usr/local/poudriere/data/.m/124i386-quarterly/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/124i386-quarterly/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=124i386-quarterly SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/124i386-quarterly/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --prefix /usr/local --mandir man --infodir share/info --auto-features=enabled -Db_colorout=never --buildtype release --strip _build --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/biology/freebayes/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/freebayes/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/freebayes/work/.cache HOME=/wrkdirs/usr/ports/biology/freebayes/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/freebayes/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/freebayes/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/freebayes/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/freebayes/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/freebayes/work/.cache HOME=/wrkdirs/usr/ports/biology/freebayes/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/freebayes/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/freebayes/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/freebayes/work/stage LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -lexecinfo -fstack-protector-strong " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=12.4 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.32.1 PERL_VER=5.32 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.32 DOCSDIR="share/doc/freebayes" EXAMPLESDIR="share/examples/freebayes" DATADIR="share/freebayes" WWWDIR="www/freebayes" ETCDIR="etc/freebayes" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/freebayes DOCSDIR=/usr/local/share/doc/freebayes EXAMPLESDIR=/usr/local/share/examples/freebayes WWWDIR=/usr/local/www/freebayes ETCDIR=/usr/local/etc/freebayes --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: i386-unknown-freebsd12.4 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: i386-unknown-freebsd12.4 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-m" "elf_i386_fbsd" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_53255a77=yes CC_OUTPUT_921dbbb2_911cfe02=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes CC_OUTPUT_921dbbb2_af59ad06=yes CC_OUTPUT_921dbbb2_a15f3fcf=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: i386-unknown-freebsd12.4 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=i386 OPSYS=FreeBSD _OSRELEASE=12.4-RELEASE-p3 OSREL=12.4 OSVERSION=1204000 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License MIT accepted by the user =========================================================================== =================================================== ===> freebayes-1.3.6_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.19.2.pkg [124i386-quarterly-job-09] Installing pkg-1.19.2... [124i386-quarterly-job-09] Extracting pkg-1.19.2: .......... done ===> freebayes-1.3.6_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of freebayes-1.3.6_2 =========================================================================== =================================================== =========================================================================== =================================================== ===> License MIT accepted by the user ===> Fetching all distfiles required by freebayes-1.3.6_2 for building =========================================================================== =================================================== ===> License MIT accepted by the user ===> Fetching all distfiles required by freebayes-1.3.6_2 for building => SHA256 Checksum OK for ekg-freebayes-v1.3.6_GH0.tar.gz. => SHA256 Checksum OK for ekg-intervaltree-17ddd57_GH0.tar.gz. => SHA256 Checksum OK for ekg-vcflib-d4073c3_GH0.tar.gz. => SHA256 Checksum OK for ekg-fastahack-bb33265_GH0.tar.gz. => SHA256 Checksum OK for ekg-filevercmp-1a9b779_GH0.tar.gz. => SHA256 Checksum OK for ekg-fsom-a6ef318_GH0.tar.gz. => SHA256 Checksum OK for google-googletest-d225acc_GH0.tar.gz. => SHA256 Checksum OK for edawson-libVCFH-615a06b_GH0.tar.gz. => SHA256 Checksum OK for ekg-multichoose-68733cd_GH0.tar.gz. => SHA256 Checksum OK for ekg-smithwaterman-2610e25_GH0.tar.gz. => SHA256 Checksum OK for ekg-tabixpp-b255df1_GH0.tar.gz. => SHA256 Checksum OK for simd-everywhere-simde-no-tests-2931676_GH0.tar.gz. => SHA256 Checksum OK for ingydotnet-test-simple-bash-124673f_GH0.tar.gz. => SHA256 Checksum OK for illusori-bash-tap-c38fbfa_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License MIT accepted by the user ===> Fetching all distfiles required by freebayes-1.3.6_2 for building ===> Extracting for freebayes-1.3.6_2 => SHA256 Checksum OK for ekg-freebayes-v1.3.6_GH0.tar.gz. => SHA256 Checksum OK for ekg-intervaltree-17ddd57_GH0.tar.gz. => SHA256 Checksum OK for ekg-vcflib-d4073c3_GH0.tar.gz. => SHA256 Checksum OK for ekg-fastahack-bb33265_GH0.tar.gz. => SHA256 Checksum OK for ekg-filevercmp-1a9b779_GH0.tar.gz. => SHA256 Checksum OK for ekg-fsom-a6ef318_GH0.tar.gz. => SHA256 Checksum OK for google-googletest-d225acc_GH0.tar.gz. => SHA256 Checksum OK for edawson-libVCFH-615a06b_GH0.tar.gz. => SHA256 Checksum OK for ekg-multichoose-68733cd_GH0.tar.gz. => SHA256 Checksum OK for ekg-smithwaterman-2610e25_GH0.tar.gz. => SHA256 Checksum OK for ekg-tabixpp-b255df1_GH0.tar.gz. => SHA256 Checksum OK for simd-everywhere-simde-no-tests-2931676_GH0.tar.gz. => SHA256 Checksum OK for ingydotnet-test-simple-bash-124673f_GH0.tar.gz. => SHA256 Checksum OK for illusori-bash-tap-c38fbfa_GH0.tar.gz. cp -f -r /wrkdirs/usr/ports/biology/freebayes/work/freebayes-1.3.6/vcflib-temp/* /wrkdirs/usr/ports/biology/freebayes/work/freebayes-1.3.6/vcflib =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for freebayes-1.3.6_2 ===> Applying FreeBSD patches for freebayes-1.3.6_2 from /usr/ports/biology/freebayes/files =========================================================================== =================================================== ===> freebayes-1.3.6_2 depends on executable: meson - not found ===> Installing existing package /packages/All/meson-1.1.1.pkg [124i386-quarterly-job-09] Installing meson-1.1.1... [124i386-quarterly-job-09] `-- Installing ninja-1.11.1,2... [124i386-quarterly-job-09] | `-- Installing python39-3.9.17... [124i386-quarterly-job-09] | | `-- Installing gettext-runtime-0.21.1... [124i386-quarterly-job-09] | | `-- Installing indexinfo-0.3.1... [124i386-quarterly-job-09] | | `-- Extracting indexinfo-0.3.1: .... done [124i386-quarterly-job-09] | | `-- Extracting gettext-runtime-0.21.1: .......... done [124i386-quarterly-job-09] | | `-- Installing libffi-3.4.4... [124i386-quarterly-job-09] | | `-- Extracting libffi-3.4.4: .......... done [124i386-quarterly-job-09] | | `-- Installing mpdecimal-2.5.1... [124i386-quarterly-job-09] | | `-- Extracting mpdecimal-2.5.1: .......... done [124i386-quarterly-job-09] | | `-- Installing readline-8.2.1... [124i386-quarterly-job-09] | | `-- Extracting readline-8.2.1: .......... done [124i386-quarterly-job-09] | `-- Extracting python39-3.9.17: .......... done [124i386-quarterly-job-09] `-- Extracting ninja-1.11.1,2: ........ done [124i386-quarterly-job-09] Extracting meson-1.1.1: .......... done ===== Message from python39-3.9.17: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 ===> freebayes-1.3.6_2 depends on executable: meson - found ===> Returning to build of freebayes-1.3.6_2 ===> freebayes-1.3.6_2 depends on executable: ninja - found ===> freebayes-1.3.6_2 depends on package: pkgconf>=1.3.0_1 - not found ===> Installing existing package /packages/All/pkgconf-1.8.1,1.pkg [124i386-quarterly-job-09] Installing pkgconf-1.8.1,1... [124i386-quarterly-job-09] Extracting pkgconf-1.8.1,1: .......... done ===> freebayes-1.3.6_2 depends on package: pkgconf>=1.3.0_1 - found ===> Returning to build of freebayes-1.3.6_2 ===> freebayes-1.3.6_2 depends on package: perl5>=5.32.r0<5.33 - not found ===> Installing existing package /packages/All/perl5-5.32.1_3.pkg [124i386-quarterly-job-09] Installing perl5-5.32.1_3... [124i386-quarterly-job-09] Extracting perl5-5.32.1_3: .......... done ===> freebayes-1.3.6_2 depends on package: perl5>=5.32.r0<5.33 - found ===> Returning to build of freebayes-1.3.6_2 =========================================================================== =================================================== ===> freebayes-1.3.6_2 depends on shared library: libhts.so - not found ===> Installing existing package /packages/All/htslib-1.17.pkg [124i386-quarterly-job-09] Installing htslib-1.17... [124i386-quarterly-job-09] `-- Installing curl-8.1.2... [124i386-quarterly-job-09] | `-- Installing ca_root_nss-3.89.1... [124i386-quarterly-job-09] | `-- Extracting ca_root_nss-3.89.1: .......... done [124i386-quarterly-job-09] | `-- Installing libnghttp2-1.53.0... [124i386-quarterly-job-09] | `-- Extracting libnghttp2-1.53.0: .......... done [124i386-quarterly-job-09] | `-- Installing libpsl-0.21.2_3... [124i386-quarterly-job-09] | | `-- Installing libidn2-2.3.4... [124i386-quarterly-job-09] | | `-- Installing libunistring-1.1... [124i386-quarterly-job-09] | | `-- Extracting libunistring-1.1: .......... done [124i386-quarterly-job-09] | | `-- Extracting libidn2-2.3.4: .......... done [124i386-quarterly-job-09] | `-- Extracting libpsl-0.21.2_3: .......... done [124i386-quarterly-job-09] | `-- Installing libssh2-1.11.0,3... [124i386-quarterly-job-09] | `-- Extracting libssh2-1.11.0,3: .......... done [124i386-quarterly-job-09] `-- Extracting curl-8.1.2: .......... done [124i386-quarterly-job-09] `-- Installing libdeflate-1.18... [124i386-quarterly-job-09] `-- Extracting libdeflate-1.18: .......... done [124i386-quarterly-job-09] Extracting htslib-1.17: .......... done ===== Message from ca_root_nss-3.89.1: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem ===> freebayes-1.3.6_2 depends on shared library: libhts.so - found (/usr/local/lib/libhts.so) ===> Returning to build of freebayes-1.3.6_2 =========================================================================== =================================================== ===> Configuring for freebayes-1.3.6_2 The Meson build system Version: 1.1.1 Source dir: /wrkdirs/usr/ports/biology/freebayes/work/freebayes-1.3.6 Build dir: /wrkdirs/usr/ports/biology/freebayes/work/freebayes-1.3.6/_build Build type: native build Project name: freebayes Project version: 1.3.6 meson.build:17:0: ERROR: Unknown compiler(s): [['cc']] A full log can be found at /wrkdirs/usr/ports/biology/freebayes/work/freebayes-1.3.6/_build/meson-logs/meson-log.txt WARNING: Running the setup command as `meson [options]` instead of `meson setup [options]` is ambiguous and deprecated. ===> Script "configure" failed unexpectedly. Please report the problem to jwb@FreeBSD.org [maintainer] and attach the "/wrkdirs/usr/ports/biology/freebayes/work/freebayes-1.3.6/_build/meson-logs/meson-log.txt" including the output of the failure of your make command. Also, it might be a good idea to provide an overview of all packages installed on your system (e.g. a /usr/local/sbin/pkg-static info -g -Ea). *** Error code 1 Stop. make: stopped in /usr/ports/biology/freebayes