[package - main-i386-default][math/py-fastcluster] Failed for py39-fastcluster-1.2.6 in build
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Date: Tue, 24 Jan 2023 04:23:27 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: sunpoet@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy17/data/main-i386-default/p08587f681899_s9c996882b0/logs/py39-fastcluster-1.2.6.log
Build URL: https://pkg-status.freebsd.org/beefy17/build.html?mastername=main-i386-default&build=p08587f681899_s9c996882b0
Log:
=>> Building math/py-fastcluster
build started at Tue Jan 24 04:23:20 UTC 2023
port directory: /usr/ports/math/py-fastcluster
package name: py39-fastcluster-1.2.6
building for: FreeBSD main-i386-default-job-07 14.0-CURRENT FreeBSD 14.0-CURRENT 1400078 i386
maintained by: sunpoet@FreeBSD.org
Makefile ident:
Poudriere version: 3.2.8-23-ga7f8d188
Host OSVERSION: 1400073
Jail OSVERSION: 1400078
Job Id: 07
!!! Jail is newer than host. (Jail: 1400078, Host: 1400073) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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sunpoet@FreeBSD.org
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--End resource limits--
=======================<phase: check-sanity >============================
===> License BSD2CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> py39-fastcluster-1.2.6 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.19.0.pkg
[main-i386-default-job-07] Installing pkg-1.19.0...
[main-i386-default-job-07] Extracting pkg-1.19.0: .......... done
===> py39-fastcluster-1.2.6 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py39-fastcluster-1.2.6
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py39-fastcluster-1.2.6 for building
===========================================================================
=======================<phase: checksum >============================
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py39-fastcluster-1.2.6 for building
=> SHA256 Checksum OK for fastcluster-1.2.6.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py39-fastcluster-1.2.6 for building
===> Extracting for py39-fastcluster-1.2.6
=> SHA256 Checksum OK for fastcluster-1.2.6.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for py39-fastcluster-1.2.6
===========================================================================
=======================<phase: build-depends >============================
===> py39-fastcluster-1.2.6 depends on package: py39-numpy>=0,1 - not found
===> Installing existing package /packages/All/py39-numpy-1.23.5_2,1.pkg
[main-i386-default-job-07] Installing py39-numpy-1.23.5_2,1...
[main-i386-default-job-07] `-- Installing gcc12-12.2.0_5...
[main-i386-default-job-07] | `-- Installing binutils-2.39,1...
[main-i386-default-job-07] | | `-- Installing gettext-runtime-0.21.1...
[main-i386-default-job-07] | | `-- Installing indexinfo-0.3.1...
[main-i386-default-job-07] | | `-- Extracting indexinfo-0.3.1: .... done
[main-i386-default-job-07] | | `-- Extracting gettext-runtime-0.21.1: .......... done
[main-i386-default-job-07] | `-- Extracting binutils-2.39,1: .......... done
[main-i386-default-job-07] | `-- Installing gmp-6.2.1...
[main-i386-default-job-07] | `-- Extracting gmp-6.2.1: .......... done
[main-i386-default-job-07] | `-- Installing mpc-1.2.1...
[main-i386-default-job-07] | | `-- Installing mpfr-4.2.0,1...
[main-i386-default-job-07] | | `-- Extracting mpfr-4.2.0,1: .......... done
[main-i386-default-job-07] | `-- Extracting mpc-1.2.1: ......... done
[main-i386-default-job-07] `-- Extracting gcc12-12.2.0_5: .......... done
[main-i386-default-job-07] `-- Installing openblas-0.3.20,1...
[main-i386-default-job-07] `-- Extracting openblas-0.3.20,1: .......... done
[main-i386-default-job-07] `-- Installing py39-setuptools-63.1.0...
[main-i386-default-job-07] | `-- Installing python39-3.9.16...
[main-i386-default-job-07] | | `-- Installing libffi-3.4.4...
[main-i386-default-job-07] | | `-- Extracting libffi-3.4.4: .......... done
[main-i386-default-job-07] | | `-- Installing mpdecimal-2.5.1...
[main-i386-default-job-07] | | `-- Extracting mpdecimal-2.5.1: .......... done
[main-i386-default-job-07] | | `-- Installing readline-8.2.0...
[main-i386-default-job-07] | | `-- Extracting readline-8.2.0: .......... done
[main-i386-default-job-07] | `-- Extracting python39-3.9.16: .......... done
[main-i386-default-job-07] `-- Extracting py39-setuptools-63.1.0: .......... done
[main-i386-default-job-07] `-- Installing suitesparse-umfpack-6.1.0...
[main-i386-default-job-07] | `-- Installing metis-5.1.0_9...
[main-i386-default-job-07] | `-- Extracting metis-5.1.0_9: .......... done
[main-i386-default-job-07] | `-- Installing suitesparse-amd-3.0.3...
[main-i386-default-job-07] | | `-- Installing suitesparse-config-7.0.1...
[main-i386-default-job-07] | | `-- Extracting suitesparse-config-7.0.1: .......... done
[main-i386-default-job-07] | `-- Extracting suitesparse-amd-3.0.3: .......... done
[main-i386-default-job-07] | `-- Installing suitesparse-camd-3.0.3...
[main-i386-default-job-07] | `-- Extracting suitesparse-camd-3.0.3: .......... done
[main-i386-default-job-07] | `-- Installing suitesparse-ccolamd-3.0.3...
[main-i386-default-job-07] | `-- Extracting suitesparse-ccolamd-3.0.3: .......... done
[main-i386-default-job-07] | `-- Installing suitesparse-cholmod-4.0.3...
[main-i386-default-job-07] | | `-- Installing suitesparse-colamd-3.0.3...
[main-i386-default-job-07] | | `-- Extracting suitesparse-colamd-3.0.3: .......... done
[main-i386-default-job-07] | `-- Extracting suitesparse-cholmod-4.0.3: .......... done
[main-i386-default-job-07] `-- Extracting suitesparse-umfpack-6.1.0: .......... done
[main-i386-default-job-07] Extracting py39-numpy-1.23.5_2,1: .......... done
=====
Message from gcc12-12.2.0_5:
--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc12
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
=====
Message from python39-3.9.16:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py39-gdbm databases/py-gdbm@py39
py39-sqlite3 databases/py-sqlite3@py39
py39-tkinter x11-toolkits/py-tkinter@py39
=====
Message from metis-5.1.0_9:
--
===> NOTICE:
The metis port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===> py39-fastcluster-1.2.6 depends on package: py39-numpy>=0,1 - found
===> Returning to build of py39-fastcluster-1.2.6
===> py39-fastcluster-1.2.6 depends on package: py39-setuptools>=63.1.0 - found
===> py39-fastcluster-1.2.6 depends on file: /usr/local/bin/python3.9 - found
===========================================================================
=======================<phase: lib-depends >============================
===========================================================================
=======================<phase: configure >============================
===> Configuring for py39-fastcluster-1.2.6
Fastcluster version: 1.2.6
Python version: 3.9.16 (main, Jan 14 2023, 01:27:16)
[Clang 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc1238
running config
===========================================================================
=======================<phase: build >============================
===> Building for py39-fastcluster-1.2.6
Fastcluster version: 1.2.6
Python version: 3.9.16 (main, Jan 14 2023, 01:27:16)
[Clang 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc1238
running build
running build_py
creating build
creating build/lib.freebsd-14.0-CURRENT-i386-cpython-39
copying fastcluster.py -> build/lib.freebsd-14.0-CURRENT-i386-cpython-39
running build_ext
building '_fastcluster' extension
creating build/temp.freebsd-14.0-CURRENT-i386-cpython-39
creating build/temp.freebsd-14.0-CURRENT-i386-cpython-39/src
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c src/fastcluster_python.cpp -o build/temp.freebsd-14.0-CURRENT-i386-cpython-39/src/fastcluster_python.o
In file included from src/fastcluster_python.cpp:62:
src/fastcluster.cpp:53:9: warning: Use fenv header. [-W#pragma-messages]
#pragma message("Use fenv header.")
^
Assertion failed: ((CGF.CurFuncDecl == nullptr || CGF.Builder.getIsFPConstrained() || isa<CXXConstructorDecl>(CGF.CurFuncDecl) || isa<CXXDestructorDecl>(CGF.CurFuncDecl) || (NewExceptionBehavior == llvm::fp::ebIgnore && NewRoundingBehavior == llvm::RoundingMode::NearestTiesToEven)) && "FPConstrained should be enabled on entire function"), function ConstructorHelper, file /usr/local/poudriere/jails/main-i386/usr/src/contrib/llvm-project/clang/lib/CodeGen/CodeGenFunction.cpp, line 163.
PLEASE submit a bug report to https://bugs.freebsd.org/submit/ and include the crash backtrace, preprocessed source, and associated run script.
Stack dump:
0. Program arguments: /usr/bin/cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c src/fastcluster_python.cpp -o build/temp.freebsd-14.0-CURRENT-i386-cpython-39/src/fastcluster_python.o
1. <eof> parser at end of file
2. Per-file LLVM IR generation
3. /usr/include/c++/v1/__memory/temporary_buffer.h:27:1: Generating code for declaration 'std::get_temporary_buffer'
4. /usr/include/c++/v1/__memory/temporary_buffer.h:36:5: LLVM IR generation of compound statement ('{}')
#0 0x04e54bd4 (/usr/bin/cc+0x4e54bd4)
#1 0x04e55050 (/usr/bin/cc+0x4e55050)
#2 0x04e52e3e (/usr/bin/cc+0x4e52e3e)
#3 0x04dfc8c4 (/usr/bin/cc+0x4dfc8c4)
#4 0x04dfca94 (/usr/bin/cc+0x4dfca94)
#5 0x265d6339 (/lib/libthr.so.3+0x18339)
#6 0x265d57f2 (/lib/libthr.so.3+0x177f2)
#7 0xffffe234 ([vdso]+0x234)
#8 0x26857b0f thr_kill (/lib/libc.so.7+0x121b0f)
#9 0x267d4b0b raise (/lib/libc.so.7+0x9eb0b)
#10 0x268807db abort (/lib/libc.so.7+0x14a7db)
#11 0x267b92dc (/lib/libc.so.7+0x832dc)
#12 0x0271153b (/usr/bin/cc+0x271153b)
#13 0x027110f0 (/usr/bin/cc+0x27110f0)
#14 0x026e985a (/usr/bin/cc+0x26e985a)
#15 0x0271cb8d (/usr/bin/cc+0x271cb8d)
#16 0x0272c4ec (/usr/bin/cc+0x272c4ec)
#17 0x0272b51b (/usr/bin/cc+0x272b51b)
#18 0x0272bb47 (/usr/bin/cc+0x272bb47)
#19 0x0272b2ea (/usr/bin/cc+0x272b2ea)
#20 0x0272d207 (/usr/bin/cc+0x272d207)
#21 0x0272b45d (/usr/bin/cc+0x272b45d)
#22 0x0273747f (/usr/bin/cc+0x273747f)
#23 0x0271aed4 (/usr/bin/cc+0x271aed4)
#24 0x0271ba81 (/usr/bin/cc+0x271ba81)
#25 0x0224f375 (/usr/bin/cc+0x224f375)
#26 0x022480b3 (/usr/bin/cc+0x22480b3)
#27 0x0223b8f6 (/usr/bin/cc+0x223b8f6)
#28 0x0223b91f (/usr/bin/cc+0x223b91f)
#29 0x0223b91f (/usr/bin/cc+0x223b91f)
#30 0x0223b91f (/usr/bin/cc+0x223b91f)
#31 0x0223b91f (/usr/bin/cc+0x223b91f)
#32 0x0223b91f (/usr/bin/cc+0x223b91f)
#33 0x0223b91f (/usr/bin/cc+0x223b91f)
#34 0x02239b54 (/usr/bin/cc+0x2239b54)
#35 0x02d77d5c (/usr/bin/cc+0x2d77d5c)
#36 0x02d751ea (/usr/bin/cc+0x2d751ea)
#37 0x032626ac (/usr/bin/cc+0x32626ac)
#38 0x02cbcd64 (/usr/bin/cc+0x2cbcd64)
#39 0x02d737ea (/usr/bin/cc+0x2d737ea)
#40 0x02cbc64a (/usr/bin/cc+0x2cbc64a)
#41 0x02c479ce (/usr/bin/cc+0x2c479ce)
#42 0x02d6f0ac (/usr/bin/cc+0x2d6f0ac)
#43 0x021e4cbc (/usr/bin/cc+0x21e4cbc)
#44 0x021f2ceb (/usr/bin/cc+0x21f2ceb)
#45 0x02affc33 (/usr/bin/cc+0x2affc33)
#46 0x04dfc7f1 (/usr/bin/cc+0x4dfc7f1)
#47 0x02aff89f (/usr/bin/cc+0x2aff89f)
#48 0x02ace158 (/usr/bin/cc+0x2ace158)
#49 0x02ace590 (/usr/bin/cc+0x2ace590)
#50 0x02ae3a89 (/usr/bin/cc+0x2ae3a89)
cc: error: clang frontend command failed with exit code 134 (use -v to see invocation)
FreeBSD clang version 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc12386ae247c)
Target: i386-unknown-freebsd14.0
Thread model: posix
InstalledDir: /usr/bin
cc: note: diagnostic msg:
********************
PLEASE ATTACH THE FOLLOWING FILES TO THE BUG REPORT:
Preprocessed source(s) and associated run script(s) are located at:
cc: note: diagnostic msg: /tmp/fastcluster_python-494479.cpp
cc: note: diagnostic msg: /tmp/fastcluster_python-494479.sh
cc: note: diagnostic msg:
********************
error: command '/usr/bin/cc' failed with exit code 134
*** Error code 1
Stop.
make: stopped in /usr/ports/math/py-fastcluster