[package - main-amd64-default][math/py-fastcluster] Failed for py39-fastcluster-1.2.6 in build

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From: <pkg-fallout_at_FreeBSD.org>
Date: Sun, 22 Jan 2023 09:56:36 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     sunpoet@FreeBSD.org
Log URL:        https://pkg-status.freebsd.org/beefy18/data/main-amd64-default/p9ed8e38cde84_sc52c98e69a/logs/py39-fastcluster-1.2.6.log
Build URL:      https://pkg-status.freebsd.org/beefy18/build.html?mastername=main-amd64-default&build=p9ed8e38cde84_sc52c98e69a
Log:

=>> Building math/py-fastcluster
build started at Sun Jan 22 09:56:30 UTC 2023
port directory: /usr/ports/math/py-fastcluster
package name: py39-fastcluster-1.2.6
building for: FreeBSD main-amd64-default-job-13 14.0-CURRENT FreeBSD 14.0-CURRENT 1400078 amd64
maintained by: sunpoet@FreeBSD.org
Makefile ident: 
Poudriere version: 3.2.8-23-ga7f8d188
Host OSVERSION: 1400073
Jail OSVERSION: 1400078
Job Id: 13




!!! Jail is newer than host. (Jail: 1400078, Host: 1400073) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



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=======================<phase: check-sanity   >============================
===>  License BSD2CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   py39-fastcluster-1.2.6 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.19.0.pkg
[main-amd64-default-job-13] Installing pkg-1.19.0...
[main-amd64-default-job-13] Extracting pkg-1.19.0: .......... done
===>   py39-fastcluster-1.2.6 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of py39-fastcluster-1.2.6
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py39-fastcluster-1.2.6 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py39-fastcluster-1.2.6 for building
=> SHA256 Checksum OK for fastcluster-1.2.6.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py39-fastcluster-1.2.6 for building
===>  Extracting for py39-fastcluster-1.2.6
=> SHA256 Checksum OK for fastcluster-1.2.6.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for py39-fastcluster-1.2.6
===========================================================================
=======================<phase: build-depends  >============================
===>   py39-fastcluster-1.2.6 depends on package: py39-numpy>=0,1 - not found
===>   Installing existing package /packages/All/py39-numpy-1.23.5_2,1.pkg
[main-amd64-default-job-13] Installing py39-numpy-1.23.5_2,1...
[main-amd64-default-job-13] `-- Installing gcc12-12.2.0_5...
[main-amd64-default-job-13] |   `-- Installing binutils-2.39,1...
[main-amd64-default-job-13] |   | `-- Installing gettext-runtime-0.21.1...
[main-amd64-default-job-13] |   |   `-- Installing indexinfo-0.3.1...
[main-amd64-default-job-13] |   |   `-- Extracting indexinfo-0.3.1: .... done
[main-amd64-default-job-13] |   | `-- Extracting gettext-runtime-0.21.1: .......... done
[main-amd64-default-job-13] |   `-- Extracting binutils-2.39,1: .......... done
[main-amd64-default-job-13] |   `-- Installing gmp-6.2.1...
[main-amd64-default-job-13] |   `-- Extracting gmp-6.2.1: .......... done
[main-amd64-default-job-13] |   `-- Installing mpc-1.2.1...
[main-amd64-default-job-13] |   | `-- Installing mpfr-4.2.0,1...
[main-amd64-default-job-13] |   | `-- Extracting mpfr-4.2.0,1: .......... done
[main-amd64-default-job-13] |   `-- Extracting mpc-1.2.1: ......... done
[main-amd64-default-job-13] `-- Extracting gcc12-12.2.0_5: .......... done
[main-amd64-default-job-13] `-- Installing openblas-0.3.20,1...
[main-amd64-default-job-13] `-- Extracting openblas-0.3.20,1: .......... done
[main-amd64-default-job-13] `-- Installing py39-setuptools-63.1.0...
[main-amd64-default-job-13] |   `-- Installing python39-3.9.16...
[main-amd64-default-job-13] |   | `-- Installing libffi-3.4.4...
[main-amd64-default-job-13] |   | `-- Extracting libffi-3.4.4: .......... done
[main-amd64-default-job-13] |   | `-- Installing mpdecimal-2.5.1...
[main-amd64-default-job-13] |   | `-- Extracting mpdecimal-2.5.1: .......... done
[main-amd64-default-job-13] |   | `-- Installing readline-8.2.0...
[main-amd64-default-job-13] |   | `-- Extracting readline-8.2.0: .......... done
[main-amd64-default-job-13] |   `-- Extracting python39-3.9.16: .......... done
[main-amd64-default-job-13] `-- Extracting py39-setuptools-63.1.0: .......... done
[main-amd64-default-job-13] `-- Installing suitesparse-umfpack-6.1.0...
[main-amd64-default-job-13] |   `-- Installing metis-5.1.0_9...
[main-amd64-default-job-13] |   `-- Extracting metis-5.1.0_9: .......... done
[main-amd64-default-job-13] |   `-- Installing suitesparse-amd-3.0.3...
[main-amd64-default-job-13] |   | `-- Installing suitesparse-config-7.0.0...
[main-amd64-default-job-13] |   | `-- Extracting suitesparse-config-7.0.0: .......... done
[main-amd64-default-job-13] |   `-- Extracting suitesparse-amd-3.0.3: .......... done
[main-amd64-default-job-13] |   `-- Installing suitesparse-camd-3.0.3...
[main-amd64-default-job-13] |   `-- Extracting suitesparse-camd-3.0.3: .......... done
[main-amd64-default-job-13] |   `-- Installing suitesparse-ccolamd-3.0.3...
[main-amd64-default-job-13] |   `-- Extracting suitesparse-ccolamd-3.0.3: .......... done
[main-amd64-default-job-13] |   `-- Installing suitesparse-cholmod-4.0.3...
[main-amd64-default-job-13] |   | `-- Installing suitesparse-colamd-3.0.3...
[main-amd64-default-job-13] |   | `-- Extracting suitesparse-colamd-3.0.3: .......... done
[main-amd64-default-job-13] |   `-- Extracting suitesparse-cholmod-4.0.3: .......... done
[main-amd64-default-job-13] `-- Extracting suitesparse-umfpack-6.1.0: .......... done
[main-amd64-default-job-13] Extracting py39-numpy-1.23.5_2,1: .......... done
=====
Message from gcc12-12.2.0_5:

--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using

  -Wl,-rpath=/usr/local/lib/gcc12

For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
=====
Message from python39-3.9.16:

--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

py39-gdbm       databases/py-gdbm@py39
py39-sqlite3    databases/py-sqlite3@py39
py39-tkinter    x11-toolkits/py-tkinter@py39
=====
Message from metis-5.1.0_9:

--
===>   NOTICE:

The metis port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===>   py39-fastcluster-1.2.6 depends on package: py39-numpy>=0,1 - found
===>   Returning to build of py39-fastcluster-1.2.6
===>   py39-fastcluster-1.2.6 depends on package: py39-setuptools>=63.1.0 - found
===>   py39-fastcluster-1.2.6 depends on file: /usr/local/bin/python3.9 - found
===========================================================================
=======================<phase: lib-depends    >============================
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for py39-fastcluster-1.2.6
Fastcluster version: 1.2.6
Python version: 3.9.16 (main, Jan 14 2023, 01:28:28) 
[Clang 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc1238
running config
===========================================================================
=======================<phase: build          >============================
===>  Building for py39-fastcluster-1.2.6
Fastcluster version: 1.2.6
Python version: 3.9.16 (main, Jan 14 2023, 01:28:28) 
[Clang 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc1238
running build
running build_py
creating build
creating build/lib.freebsd-14.0-CURRENT-amd64-cpython-39
copying fastcluster.py -> build/lib.freebsd-14.0-CURRENT-amd64-cpython-39
running build_ext
building '_fastcluster' extension
creating build/temp.freebsd-14.0-CURRENT-amd64-cpython-39
creating build/temp.freebsd-14.0-CURRENT-amd64-cpython-39/src
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c src/fastcluster_python.cpp -o build/temp.freebsd-14.0-CURRENT-amd64-cpython-39/src/fastcluster_python.o
In file included from src/fastcluster_python.cpp:62:
src/fastcluster.cpp:53:9: warning: Use fenv header. [-W#pragma-messages]
#pragma message("Use fenv header.")
        ^
Assertion failed: ((CGF.CurFuncDecl == nullptr || CGF.Builder.getIsFPConstrained() || isa<CXXConstructorDecl>(CGF.CurFuncDecl) || isa<CXXDestructorDecl>(CGF.CurFuncDecl) || (NewExceptionBehavior == llvm::fp::ebIgnore && NewRoundingBehavior == llvm::RoundingMode::NearestTiesToEven)) && "FPConstrained should be enabled on entire function"), function ConstructorHelper, file /usr/local/poudriere/jails/main-amd64/usr/src/contrib/llvm-project/clang/lib/CodeGen/CodeGenFunction.cpp, line 163.
PLEASE submit a bug report to https://bugs.freebsd.org/submit/ and include the crash backtrace, preprocessed source, and associated run script.
Stack dump:
0.	Program arguments: /usr/bin/cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c src/fastcluster_python.cpp -o build/temp.freebsd-14.0-CURRENT-amd64-cpython-39/src/fastcluster_python.o
1.	<eof> parser at end of file
2.	Per-file LLVM IR generation
3.	/usr/include/c++/v1/__memory/temporary_buffer.h:27:1: Generating code for declaration 'std::get_temporary_buffer'
4.	/usr/include/c++/v1/__memory/temporary_buffer.h:36:5: LLVM IR generation of compound statement ('{}')
 #0 0x00000000050cbfa1 (/usr/bin/cc+0x50cbfa1)
 #1 0x00000000050ca2d5 (/usr/bin/cc+0x50ca2d5)
 #2 0x00000000050724fe (/usr/bin/cc+0x50724fe)
 #3 0x00000000050726c3 (/usr/bin/cc+0x50726c3)
 #4 0x000000082a62fbd0 (/lib/libthr.so.3+0x19bd0)
 #5 0x000000082a62f18f (/lib/libthr.so.3+0x1918f)
 #6 0x00000008274f58a3 ([vdso]+0x2d3)
 #7 0x000000082c30f41a __sys_thr_kill (/lib/libc.so.7+0x13e41a)
 #8 0x000000082c287ab4 __raise (/lib/libc.so.7+0xb6ab4)
 #9 0x000000082c339239 abort (/lib/libc.so.7+0x168239)
#10 0x000000082c26a891 (/lib/libc.so.7+0x99891)
#11 0x00000000029a685b (/usr/bin/cc+0x29a685b)
#12 0x0000000002983dc3 (/usr/bin/cc+0x2983dc3)
#13 0x00000000029affc2 (/usr/bin/cc+0x29affc2)
#14 0x00000000029bf509 (/usr/bin/cc+0x29bf509)
#15 0x00000000029becb1 (/usr/bin/cc+0x29becb1)
#16 0x00000000029be054 (/usr/bin/cc+0x29be054)
#17 0x00000000029c040b (/usr/bin/cc+0x29c040b)
#18 0x00000000029ca0fc (/usr/bin/cc+0x29ca0fc)
#19 0x00000000029ae37e (/usr/bin/cc+0x29ae37e)
#20 0x00000000029aef42 (/usr/bin/cc+0x29aef42)
#21 0x00000000024f5110 (/usr/bin/cc+0x24f5110)
#22 0x00000000024ee65b (/usr/bin/cc+0x24ee65b)
#23 0x00000000024e2733 (/usr/bin/cc+0x24e2733)
#24 0x00000000024e2763 (/usr/bin/cc+0x24e2763)
#25 0x00000000024e2763 (/usr/bin/cc+0x24e2763)
#26 0x00000000024e2763 (/usr/bin/cc+0x24e2763)
#27 0x00000000024e2763 (/usr/bin/cc+0x24e2763)
#28 0x00000000024e2763 (/usr/bin/cc+0x24e2763)
#29 0x00000000024e2763 (/usr/bin/cc+0x24e2763)
#30 0x00000000024e0d27 (/usr/bin/cc+0x24e0d27)
#31 0x0000000002fc2194 (/usr/bin/cc+0x2fc2194)
#32 0x0000000002fbf5e6 (/usr/bin/cc+0x2fbf5e6)
#33 0x00000000034f5244 (/usr/bin/cc+0x34f5244)
#34 0x0000000002efc0df (/usr/bin/cc+0x2efc0df)
#35 0x0000000002e9071f (/usr/bin/cc+0x2e9071f)
#36 0x0000000002fb9186 (/usr/bin/cc+0x2fb9186)
#37 0x000000000248a245 (/usr/bin/cc+0x248a245)
#38 0x0000000002497795 (/usr/bin/cc+0x2497795)
#39 0x0000000002d4c887 (/usr/bin/cc+0x2d4c887)
#40 0x0000000005072434 (/usr/bin/cc+0x5072434)
#41 0x0000000002d4c493 (/usr/bin/cc+0x2d4c493)
#42 0x0000000002d1a8b2 (/usr/bin/cc+0x2d1a8b2)
#43 0x0000000002d1ad59 (/usr/bin/cc+0x2d1ad59)
#44 0x0000000002d2fa7c (/usr/bin/cc+0x2d2fa7c)
cc: error: clang frontend command failed with exit code 134 (use -v to see invocation)
FreeBSD clang version 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc12386ae247c)
Target: x86_64-unknown-freebsd14.0
Thread model: posix
InstalledDir: /usr/bin
cc: note: diagnostic msg: 
********************

PLEASE ATTACH THE FOLLOWING FILES TO THE BUG REPORT:
Preprocessed source(s) and associated run script(s) are located at:
cc: note: diagnostic msg: /tmp/fastcluster_python-ad8f49.cpp
cc: note: diagnostic msg: /tmp/fastcluster_python-ad8f49.sh
cc: note: diagnostic msg: 

********************
error: command '/usr/bin/cc' failed with exit code 134
*** Error code 1

Stop.
make: stopped in /usr/ports/math/py-fastcluster