[package - main-armv6-default][biology/seqan-apps] Failed for seqan-apps-2.4.0_11 in configure

From: <pkg-fallout_at_FreeBSD.org>
Date: Sat, 14 Jan 2023 08:28:13 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     h2+fbsdports@fsfe.org
Log URL:        https://pkg-status.freebsd.org/beefy8/data/main-armv6-default/pe70dad9524c9_s24f42edcdd/logs/seqan-apps-2.4.0_11.log
Build URL:      https://pkg-status.freebsd.org/beefy8/build.html?mastername=main-armv6-default&build=pe70dad9524c9_s24f42edcdd
Log:

=>> Building biology/seqan-apps
build started at Sat Jan 14 08:27:35 UTC 2023
port directory: /usr/ports/biology/seqan-apps
package name: seqan-apps-2.4.0_11
building for: FreeBSD main-armv6-default-job-02 14.0-CURRENT FreeBSD 14.0-CURRENT 1400077 arm
maintained by: h2+fbsdports@fsfe.org
Makefile ident: 
Poudriere version: 3.2.8-23-ga7f8d188
Host OSVERSION: 1400073
Jail OSVERSION: 1400077
Job Id: 02




!!! Jail is newer than host. (Jail: 1400077, Host: 1400073) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



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===> The following configuration options are available for seqan-apps-2.4.0_11:
====> Options available for the radio ARCH: you can only select none or one of them
     SSE4=off: Use SSE4 and POPCNT instructions
     AVX2=off: Use SSE4, AVX2 and POPCNT instructions
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===> Use 'make config' to modify these settings
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=======================<phase: check-sanity   >============================
===>  License BSD3CLAUSE LGPL3 GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   seqan-apps-2.4.0_11 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.19.0.pkg
[main-armv6-default-job-02] Installing pkg-1.19.0...
[main-armv6-default-job-02] Extracting pkg-1.19.0: .......... done
===>   seqan-apps-2.4.0_11 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of seqan-apps-2.4.0_11
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License BSD3CLAUSE LGPL3 GPLv3 accepted by the user
===> Fetching all distfiles required by seqan-apps-2.4.0_11 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License BSD3CLAUSE LGPL3 GPLv3 accepted by the user
===> Fetching all distfiles required by seqan-apps-2.4.0_11 for building
=> SHA256 Checksum OK for seqan-seqan-seqan-v2.4.0_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License BSD3CLAUSE LGPL3 GPLv3 accepted by the user
===> Fetching all distfiles required by seqan-apps-2.4.0_11 for building
===>  Extracting for seqan-apps-2.4.0_11
=> SHA256 Checksum OK for seqan-seqan-seqan-v2.4.0_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for seqan-apps-2.4.0_11
===========================================================================
=======================<phase: build-depends  >============================
===>   seqan-apps-2.4.0_11 depends on package: boost-libs>0 - not found
===>   Installing existing package /packages/All/boost-libs-1.80.0_1.pkg
[main-armv6-default-job-02] Installing boost-libs-1.80.0_1...
[main-armv6-default-job-02] `-- Installing icu-72.1,1...
[main-armv6-default-job-02] `-- Extracting icu-72.1,1: .......... done
[main-armv6-default-job-02] Extracting boost-libs-1.80.0_1: .......... done
=====
Message from boost-libs-1.80.0_1:

--
You have built the Boost library with thread support.

Don't forget to add -pthread to your linker options when
linking your code.
===>   seqan-apps-2.4.0_11 depends on package: boost-libs>0 - found
===>   Returning to build of seqan-apps-2.4.0_11
===>   seqan-apps-2.4.0_11 depends on file: /usr/local/bin/cmake - not found
===>   Installing existing package /packages/All/cmake-core-3.25.1.pkg
[main-armv6-default-job-02] Installing cmake-core-3.25.1...
[main-armv6-default-job-02] `-- Installing expat-2.5.0...
[main-armv6-default-job-02] `-- Extracting expat-2.5.0: .......... done
[main-armv6-default-job-02] `-- Installing jsoncpp-1.9.5...
[main-armv6-default-job-02] `-- Extracting jsoncpp-1.9.5: .......... done
[main-armv6-default-job-02] `-- Installing libuv-1.44.2...
[main-armv6-default-job-02] `-- Extracting libuv-1.44.2: .......... done
[main-armv6-default-job-02] `-- Installing rhash-1.4.3...
[main-armv6-default-job-02] |   `-- Installing gettext-runtime-0.21.1...
[main-armv6-default-job-02] |   | `-- Installing indexinfo-0.3.1...
[main-armv6-default-job-02] |   | `-- Extracting indexinfo-0.3.1: .... done
[main-armv6-default-job-02] |   `-- Extracting gettext-runtime-0.21.1: .......... done
[main-armv6-default-job-02] `-- Extracting rhash-1.4.3: .......... done
[main-armv6-default-job-02] Extracting cmake-core-3.25.1: .......... done
===>   seqan-apps-2.4.0_11 depends on file: /usr/local/bin/cmake - found
===>   Returning to build of seqan-apps-2.4.0_11
===>   seqan-apps-2.4.0_11 depends on executable: ninja - not found
===>   Installing existing package /packages/All/ninja-1.11.1,2.pkg
[main-armv6-default-job-02] Installing ninja-1.11.1,2...
[main-armv6-default-job-02] `-- Installing python39-3.9.16...
[main-armv6-default-job-02] |   `-- Installing libffi-3.4.4...
[main-armv6-default-job-02] |   `-- Extracting libffi-3.4.4: .......... done
[main-armv6-default-job-02] |   `-- Installing mpdecimal-2.5.1...
[main-armv6-default-job-02] |   `-- Extracting mpdecimal-2.5.1: .......... done
[main-armv6-default-job-02] |   `-- Installing readline-8.2.0...
[main-armv6-default-job-02] |   `-- Extracting readline-8.2.0: .......... done
[main-armv6-default-job-02] `-- Extracting python39-3.9.16: .......... done
[main-armv6-default-job-02] Extracting ninja-1.11.1,2: ........ done
=====
Message from python39-3.9.16:

--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

py39-gdbm       databases/py-gdbm@py39
py39-sqlite3    databases/py-sqlite3@py39
py39-tkinter    x11-toolkits/py-tkinter@py39
===>   seqan-apps-2.4.0_11 depends on executable: ninja - found
===>   Returning to build of seqan-apps-2.4.0_11
===========================================================================
=======================<phase: lib-depends    >============================
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for seqan-apps-2.4.0_11
===>  Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/biology/seqan-apps/work/.build
-- The CXX compiler identification is Clang 14.0.5
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /nxb-bin/usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Initializing SeqAn Build System...
--   Selected repository dir: /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.4.0
-- No revision system found.
--   Repository date not determined.
--   Repository revision not determined.
-- Configuring apps
-- Configuring apps/alf
-- Performing Test CXX14_BUILTIN
-- Performing Test CXX14_BUILTIN - Success
-- Looking for C++ include execinfo.h
-- Looking for C++ include execinfo.h - found
-- Found Seqan: /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.4.0/include (found version "2.4.0")
-- Configuring apps/bs_tools
-- Found ZLIB: /usr/lib/libz.so (found version "1.2.12") 
-- Found Boost: /usr/local/include (found version "1.80.0")  
-- Found Seqan: /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.4.0/include (found version "2.4.0")
-- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7")
-- Configuring apps/dfi
-- Found Seqan: /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.4.0/include (found version "2.4.0")
-- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7")
-- Configuring apps/fiona
CMake Error at /usr/local/share/cmake/Modules/FindOpenMP.cmake:261 (try_compile):
  The test project needs language C which is not enabled.
Call Stack (most recent call first):
  /usr/local/share/cmake/Modules/FindOpenMP.cmake:537 (_OPENMP_GET_FLAGS)
  apps/fiona/CMakeLists.txt:21 (find_package)


CMake Error: CMAKE_C_COMPILER not set, after EnableLanguage
CMake Error: CMAKE_CXX_COMPILER not set, after EnableLanguage
CMake Error at /usr/local/share/cmake/Modules/FindOpenMP.cmake:261 (try_compile):
  Failed to configure test project build system.
Call Stack (most recent call first):
  /usr/local/share/cmake/Modules/FindOpenMP.cmake:537 (_OPENMP_GET_FLAGS)
  apps/fiona/CMakeLists.txt:21 (find_package)


-- Configuring incomplete, errors occurred!
See also "/wrkdirs/usr/ports/biology/seqan-apps/work/.build/CMakeFiles/CMakeOutput.log".
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/seqan-apps