[package - main-powerpc64-default][science/bout++] Failed for bout++-4.4.2_1 in configure
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Date: Tue, 10 Jan 2023 08:44:31 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/foul1/data/main-powerpc64-default/p25bd187bcf5e_s4ac8f4067/logs/bout++-4.4.2_1.log
Build URL: https://pkg-status.freebsd.org/foul1/build.html?mastername=main-powerpc64-default&build=p25bd187bcf5e_s4ac8f4067
Log:
=>> Building science/bout++
build started at Tue Jan 10 08:42:41 UTC 2023
port directory: /usr/ports/science/bout++
package name: bout++-4.4.2_1
building for: FreeBSD main-powerpc64-default-job-04 14.0-CURRENT FreeBSD 14.0-CURRENT 1400077 powerpc
maintained by: yuri@FreeBSD.org
Makefile ident:
Poudriere version: 3.2.8-23-ga7f8d188
Host OSVERSION: 1400073
Jail OSVERSION: 1400077
Job Id: 04
!!! Jail is newer than host. (Jail: 1400077, Host: 1400073) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for bout++-4.4.2_1:
OPENMP=off: Parallel processing support via OpenMP
PETSC=on: Build with PETSc support
SLEPC=on: Build with SLEPc support
SUNDIALS=off: Build with Sundials support
====> File format support: you have to choose at least one of them
HDF5=off: HDF-5 data format support
NETCDF=on: NetCDF data format support
====> MPI (Message Passing Interface) support: you have to select exactly one of them
MPICH=on: Parallel processing support via MPICH 3
OPENMPI=off: Parallel processing support via Open MPI
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
PYTHON="/usr/local/bin/python3.9" PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/science/bout++/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/bout++/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/bout++/work/.cache HOME=/wrkdirs/usr/ports/science/bout++/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/bout++/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/bout++/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local"
--End CONFIGURE_ENV--
--MAKE_ENV--
NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/science/bout++/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/bout++/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/bout++/work/.cache HOME=/wrkdirs/usr/ports/science/bout++/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/bout++/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/bout++/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/science/bout++/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -lexecinfo -fstack-protector-strong -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno
-strict-aliasing -I/wrkdirs/usr/ports/science/bout++/work/BOUT-dev-4.4.2/include -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/bout++" EXAMPLESDIR="share/examples/bout++" DATADIR="share/bout++" WWWDIR="www/bout++" ETCDIR="etc/bout++"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/bout++ DOCSDIR=/usr/local/share/doc/bout++ EXAMPLESDIR=/usr/local/share/examples/bout++ WWWDIR=/usr/local/www/bout++ ETCDIR=/usr/local/etc/bout++
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=FreeBSD clang version 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc12386ae247c) Target: powerpc64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin
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CC_OUTPUT_921dbbb2_58173849=yes
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CONFIGURE_MAX_CMD_LEN=524288
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#### Misc Poudriere ####
GID=0
UID=0
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file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 33554432
stack size (kbytes, -s) 524288
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 1024
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===> License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> bout++-4.4.2_1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.19.0.pkg
[main-powerpc64-default-job-04] Installing pkg-1.19.0...
[main-powerpc64-default-job-04] Extracting pkg-1.19.0: .......... done
===> bout++-4.4.2_1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of bout++-4.4.2_1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv3 accepted by the user
=> boutproject-BOUT-dev-v4.4.2_GH0.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch https://codeload.github.com/boutproject/BOUT-dev/tar.gz/v4.4.2?dummy=/boutproject-BOUT-dev-v4.4.2_GH0.tar.gz
fetch: https://codeload.github.com/boutproject/BOUT-dev/tar.gz/v4.4.2?dummy=/boutproject-BOUT-dev-v4.4.2_GH0.tar.gz: size unknown
fetch: https://codeload.github.com/boutproject/BOUT-dev/tar.gz/v4.4.2?dummy=/boutproject-BOUT-dev-v4.4.2_GH0.tar.gz: size of remote file is not known
boutproject-BOUT-dev-v4.4.2_GH0.tar.gz 16 MB 10 MBps 01s
=> boutproject-boutdata-3a66e6c_GH0.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch https://codeload.github.com/boutproject/boutdata/tar.gz/3a66e6c?dummy=/boutproject-boutdata-3a66e6c_GH0.tar.gz
fetch: https://codeload.github.com/boutproject/boutdata/tar.gz/3a66e6c?dummy=/boutproject-boutdata-3a66e6c_GH0.tar.gz: size unknown
fetch: https://codeload.github.com/boutproject/boutdata/tar.gz/3a66e6c?dummy=/boutproject-boutdata-3a66e6c_GH0.tar.gz: size of remote file is not known
boutproject-boutdata-3a66e6c_GH0.tar.gz 63 kB 3291 kBps 00s
=> boutproject-boututils-a79a00a_GH0.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch https://codeload.github.com/boutproject/boututils/tar.gz/a79a00a?dummy=/boutproject-boututils-a79a00a_GH0.tar.gz
fetch: https://codeload.github.com/boutproject/boututils/tar.gz/a79a00a?dummy=/boutproject-boututils-a79a00a_GH0.tar.gz: size unknown
fetch: https://codeload.github.com/boutproject/boututils/tar.gz/a79a00a?dummy=/boutproject-boututils-a79a00a_GH0.tar.gz: size of remote file is not known
<snip>
===> bout++-4.4.2_1 depends on shared library: libpetsc.so - not found
===> Installing existing package /packages/All/PETSc-3.18.2.pkg
[main-powerpc64-default-job-04] Installing PETSc-3.18.2...
[main-powerpc64-default-job-04] `-- Installing blas-3.11.0...
[main-powerpc64-default-job-04] `-- Extracting blas-3.11.0: ........ done
[main-powerpc64-default-job-04] `-- Installing lapack-3.11.0...
[main-powerpc64-default-job-04] `-- Extracting lapack-3.11.0: .......... done
[main-powerpc64-default-job-04] `-- Installing libX11-1.7.2,1...
[main-powerpc64-default-job-04] | `-- Installing libxcb-1.15...
[main-powerpc64-default-job-04] | | `-- Installing libXau-1.0.9...
[main-powerpc64-default-job-04] | | `-- Extracting libXau-1.0.9: .......... done
[main-powerpc64-default-job-04] | | `-- Installing libXdmcp-1.1.3...
[main-powerpc64-default-job-04] | | `-- Installing xorgproto-2022.1...
[main-powerpc64-default-job-04] | | `-- Extracting xorgproto-2022.1: .......... done
[main-powerpc64-default-job-04] | | `-- Extracting libXdmcp-1.1.3: ......... done
[main-powerpc64-default-job-04] | | `-- Installing libpthread-stubs-0.4...
[main-powerpc64-default-job-04] | | `-- Extracting libpthread-stubs-0.4: .... done
[main-powerpc64-default-job-04] | `-- Extracting libxcb-1.15: .......... done
[main-powerpc64-default-job-04] `-- Extracting libX11-1.7.2,1: .......... done
[main-powerpc64-default-job-04] `-- Installing mpich-3.4.3_1...
[main-powerpc64-default-job-04] | `-- Installing bash-5.2.15...
[main-powerpc64-default-job-04] | `-- Extracting bash-5.2.15: .......... done
[main-powerpc64-default-job-04] | `-- Installing hwloc2-2.8.0...
[main-powerpc64-default-job-04] | | `-- Installing level-zero-1.8.12...
[main-powerpc64-default-job-04] | | `-- Extracting level-zero-1.8.12: .......... done
[main-powerpc64-default-job-04] | | `-- Installing libpciaccess-0.16...
[main-powerpc64-default-job-04] | | `-- Installing pciids-20220909...
[main-powerpc64-default-job-04] | | `-- Extracting pciids-20220909: ..... done
[main-powerpc64-default-job-04] | | `-- Extracting libpciaccess-0.16: ......... done
[main-powerpc64-default-job-04] | | `-- Installing libxml2-2.10.3_1...
[main-powerpc64-default-job-04] | | `-- Extracting libxml2-2.10.3_1: .......... done
[main-powerpc64-default-job-04] | `-- Extracting hwloc2-2.8.0: .......... done
[main-powerpc64-default-job-04] | `-- Installing json-c-0.16...
[main-powerpc64-default-job-04] | `-- Extracting json-c-0.16: .......... done
[main-powerpc64-default-job-04] | `-- Installing libepoll-shim-0.0.20220703...
[main-powerpc64-default-job-04] | `-- Extracting libepoll-shim-0.0.20220703: .......... done
[main-powerpc64-default-job-04] | `-- Installing libfabric-1.15.1...
[main-powerpc64-default-job-04] | `-- Extracting libfabric-1.15.1: .......... done
[main-powerpc64-default-job-04] | `-- Installing perl5-5.32.1_3...
[main-powerpc64-default-job-04] | `-- Extracting perl5-5.32.1_3: .......... done
[main-powerpc64-default-job-04] | `-- Installing slurm-wlm-20.02.7_2...
[main-powerpc64-default-job-04] | | `-- Installing liblz4-1.9.4,1...
[main-powerpc64-default-job-04] | | `-- Extracting liblz4-1.9.4,1: .......... done
[main-powerpc64-default-job-04] | | `-- Installing libsysinfo-0.0.3_2...
[main-powerpc64-default-job-04] | | `-- Extracting libsysinfo-0.0.3_2: ......... done
[main-powerpc64-default-job-04] | | `-- Installing lua54-5.4.4...
[main-powerpc64-default-job-04] | | `-- Installing libedit-3.1.20221030,1...
[main-powerpc64-default-job-04] | | `-- Extracting libedit-3.1.20221030,1: .......... done
[main-powerpc64-default-job-04] | | `-- Extracting lua54-5.4.4: .......... done
[main-powerpc64-default-job-04] | | `-- Installing munge-0.5.14_1...
[main-powerpc64-default-job-04] | | `-- Extracting munge-0.5.14_1: ......... done
===> Creating groups.
Creating group 'slurm' with gid '468'.
===> Creating users
Creating user 'slurm' with uid '468'.
[main-powerpc64-default-job-04] | `-- Extracting slurm-wlm-20.02.7_2: .......... done
[main-powerpc64-default-job-04] `-- Extracting mpich-3.4.3_1: .......... done
[main-powerpc64-default-job-04] Extracting PETSc-3.18.2: .......... done
=====
Message from slurm-wlm-20.02.7_2:
--
===> NOTICE:
The slurm-wlm port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
=====
Message from mpich-3.4.3_1:
--
===> NOTICE:
The mpich port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===> bout++-4.4.2_1 depends on shared library: libpetsc.so - found (/usr/local/lib/libpetsc.so)
===> Returning to build of bout++-4.4.2_1
===> bout++-4.4.2_1 depends on shared library: libslepc.so - not found
===> Installing existing package /packages/All/slepc-3.18.1.pkg
[main-powerpc64-default-job-04] Installing slepc-3.18.1...
[main-powerpc64-default-job-04] Extracting slepc-3.18.1: .......... done
===> bout++-4.4.2_1 depends on shared library: libslepc.so - found (/usr/local/lib/libslepc.so)
===> Returning to build of bout++-4.4.2_1
===> bout++-4.4.2_1 depends on shared library: libintl.so - found (/usr/local/lib/libintl.so)
===> bout++-4.4.2_1 depends on shared library: libmpich.so - found (/usr/local/lib/libmpich.so)
===========================================================================
=======================<phase: configure >============================
===> Configuring for bout++-4.4.2_1
===> Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/science/bout++/work/.build
-- The CXX compiler identification is Clang 14.0.5
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found MPI_CXX: /usr/local/lib/libmpicxx.so (found version "3.1")
-- Found MPI: TRUE (found version "3.1")
-- Found Python: /usr/local/bin/python3.9 (found version "3.9.16") found components: Interpreter
-- Could NOT find ClangFormat (missing: ClangFormat_BIN)
CMake Warning (dev) at CMakeLists.txt:346 (message):
'src/field/generated_fieldops.cxx' will not be regenerated when you make
changes to either 'src/field/gen_fieldops.py' or
'src/field/gen_fieldops.jinja'. This is because either Python or
clang-format is missing (see above messages for more information) or
BOUT_GENERATE_FIELDOPS is OFF (current value: ON). This warning is only
important for BOUT++ developers and can otherwise be safely ignored.
This warning is for project developers. Use -Wno-dev to suppress it.
-- Enable coverage: OFF
CMake Warning (dev) at /usr/local/share/cmake/Modules/CMakeDependentOption.cmake:89 (message):
Policy CMP0127 is not set: cmake_dependent_option() supports full Condition
Syntax. Run "cmake --help-policy CMP0127" for policy details. Use the
cmake_policy command to set the policy and suppress this warning.
Call Stack (most recent call first):
CMakeLists.txt:388 (cmake_dependent_option)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Using mpark.variant submodule
-- Performing Test HAS_FLAG__Wnull_dereference
-- Performing Test HAS_FLAG__Wnull_dereference - Success
-- Warning flag is supported by compiler: -Wnull-dereference
-- Found negative flag: -Wno-cast-function-type
replaced with -Wcast-function-type
-- Performing Test HAS_FLAG__Wno_cast_function_type
-- Performing Test HAS_FLAG__Wno_cast_function_type - Success
-- Warning flag is supported by compiler: -Wno-cast-function-type
-- Runtime checking level: CHECK=2
-- Extra debug output: BOUT_USE_OUTPUT_DEBUG=OFF
-- Signal handling: BOUT_USE_SIGNAL=ON
-- Output coloring: BOUT_USE_COLOR=ON
-- Field name tracking: BOUT_USE_TRACK=ON
-- Signalling floating point exceptions: BOUT_USE_SIGFPE=OFF
-- Enable backtrace: BOUT_USE_BACKTRACE=ON
-- Enable OpenMP: false
-- Git revision: GITDIR-NOTFOUND
-- PVODE support: ON
-- Found PkgConfig: /usr/local/bin/pkgconf (found version "1.8.0")
-- Checking for module 'netcdf-cxx4'
-- Found netcdf-cxx4, version 4.3.1
-- NetCDF support: true
-- HDF5 support: false
-- Found FFTW: /usr/local/lib/libfftw3.so
-- FFTW support: ON
-- Looking for sgemm_
-- Looking for sgemm_ - not found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Looking for sgemm_
-- Looking for sgemm_ - found
-- Found BLAS: /usr/local/lib/libopenblas.so
-- Looking for cheev_
-- Looking for cheev_ - found
-- Found LAPACK: /usr/local/lib/libopenblas.so;-lpthread;-lm;-ldl
-- LAPACK support: ON
-- petsc_lib_dir /usr/local/lib
-- Recognized PETSc install with single library for all packages
-- Performing Test MULTIPASS_TEST_1_petsc_works_minimal
-- Performing Test MULTIPASS_TEST_1_petsc_works_minimal - Failed
-- Performing Test MULTIPASS_TEST_2_petsc_works_allincludes
-- Performing Test MULTIPASS_TEST_2_petsc_works_allincludes - Failed
-- Performing Test MULTIPASS_TEST_3_petsc_works_alllibraries
-- Performing Test MULTIPASS_TEST_3_petsc_works_alllibraries - Failed
-- Performing Test MULTIPASS_TEST_4_petsc_works_all
-- Performing Test MULTIPASS_TEST_4_petsc_works_all - Failed
-- PETSc could not be used, maybe the install is broken.
CMake Error at /usr/local/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:230 (message):
PETSc could not be found. Be sure to set PETSC_DIR and PETSC_ARCH.
(missing: PETSC_EXECUTABLE_RUNS) (found version "3.18.2")
Call Stack (most recent call first):
/usr/local/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:594 (_FPHSA_FAILURE_MESSAGE)
cmake/FindPETSc.cmake:380 (find_package_handle_standard_args)
CMakeLists.txt:615 (find_package)
-- Configuring incomplete, errors occurred!
See also "/wrkdirs/usr/ports/science/bout++/work/.build/CMakeFiles/CMakeOutput.log".
See also "/wrkdirs/usr/ports/science/bout++/work/.build/CMakeFiles/CMakeError.log".
*** Error code 1
Stop.
make: stopped in /usr/ports/science/bout++