[package - 131i386-default][biology/kmcp] Failed for kmcp-0.9.1_2 in build

From: <pkg-fallout_at_FreeBSD.org>
Date: Thu, 23 Feb 2023 15:36:53 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri@FreeBSD.org
Log URL:        https://pkg-status.freebsd.org/beefy15/data/131i386-default/99aea2c7cc90/logs/kmcp-0.9.1_2.log
Build URL:      https://pkg-status.freebsd.org/beefy15/build.html?mastername=131i386-default&build=99aea2c7cc90
Log:

=>> Building biology/kmcp
build started at Thu Feb 23 15:36:11 UTC 2023
port directory: /usr/ports/biology/kmcp
package name: kmcp-0.9.1_2
building for: FreeBSD 131i386-default-job-09 13.1-RELEASE-p7 FreeBSD 13.1-RELEASE-p7 i386
maintained by: yuri@FreeBSD.org
Makefile ident: 
Poudriere version: 3.2.8-23-ga7f8d188
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Job Id: 09

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yuri@FreeBSD.org
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XDG_DATA_HOME=/wrkdirs/usr/ports/biology/kmcp/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/kmcp/work  XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/kmcp/work/.cache  HOME=/wrkdirs/usr/ports/biology/kmcp/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/kmcp/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/kmcp/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
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XDG_DATA_HOME=/wrkdirs/usr/ports/biology/kmcp/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/kmcp/work  XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/kmcp/work/.cache  HOME=/wrkdirs/usr/ports/biology/kmcp/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/kmcp/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/kmcp/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local  LOCALBASE=/usr/local  CC="cc" CFLAGS="-O2 -pipe  -fstack-protector-strong -fno-strict-aliasing "  CPP="cpp" CPPFLAGS=""  LDFLAGS=" -fstack-protector-strong " LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing  "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD
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OSREL=13.1 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/kmcp"  EXAMPLESDIR="share/examples/kmcp"  DATADIR="share/kmcp"  WWWDIR="www/kmcp"  ETCDIR="etc/kmcp"
--End PLIST_SUB--

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=======================<phase: check-sanity   >============================
===>  License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   kmcp-0.9.1_2 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.19.1_1.pkg
[131i386-default-job-09] Installing pkg-1.19.1_1...
[131i386-default-job-09] Extracting pkg-1.19.1_1: .......... done
===>   kmcp-0.9.1_2 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of kmcp-0.9.1_2
===========================================================================
=======================<phase: fetch-depends  >============================
===>   kmcp-0.9.1_2 depends on file: /usr/local/bin/go120 - not found
===>   Installing existing package /packages/All/go120-1.20.1.pkg
[131i386-default-job-09] Installing go120-1.20.1...
[131i386-default-job-09] Extracting go120-1.20.1: .......... done
===>   kmcp-0.9.1_2 depends on file: /usr/local/bin/go120 - found
===>   Returning to build of kmcp-0.9.1_2
===>   kmcp-0.9.1_2 depends on package: ca_root_nss>0 - not found
===>   Installing existing package /packages/All/ca_root_nss-3.88.1.pkg
[131i386-default-job-09] Installing ca_root_nss-3.88.1...
[131i386-default-job-09] Extracting ca_root_nss-3.88.1: .......... done
=====
Message from ca_root_nss-3.88.1:

--
FreeBSD does not, and can not warrant that the certification authorities
whose certificates are included in this package have in any way been
audited for trustworthiness or RFC 3647 compliance.

Assessment and verification of trust is the complete responsibility of the
system administrator.


This package installs symlinks to support root certificates discovery by
default for software that uses OpenSSL.

This enables SSL Certificate Verification by client software without manual
intervention.

If you prefer to do this manually, replace the following symlinks with
either an empty file or your site-local certificate bundle.

  * /etc/ssl/cert.pem
  * /usr/local/etc/ssl/cert.pem
  * /usr/local/openssl/cert.pem
===>   kmcp-0.9.1_2 depends on package: ca_root_nss>0 - found
<snip>
github.com/ulikunitz/xz/internal/hash
internal/coverage/rtcov
vendor/golang.org/x/crypto/cryptobyte/asn1
unicode/utf16
vendor/golang.org/x/crypto/internal/alias
math/bits
encoding
crypto/internal/alias
internal/goexperiment
github.com/shenwei356/pand
internal/goos
unicode/utf8
crypto/internal/boring/sig
internal/goarch
internal/nettrace
github.com/VividCortex/ewma
internal/cpu
internal/unsafeheader
internal/race
sync/atomic
unicode
runtime/internal/atomic
# github.com/shenwei356/pand
vendor/github.com/shenwei356/pand/dispatch.go:19:20: undefined: andInplaceFuncs
vendor/github.com/shenwei356/pand/dispatch.go:29:20: undefined: andFuncs
internal/abi
runtime/internal/math
runtime/internal/sys
math
github.com/rivo/uniseg
internal/bytealg
runtime
github.com/shenwei356/util/math
github.com/klauspost/compress
github.com/vbauerster/mpb/v5/internal
crypto/subtle
internal/reflectlite
sync
internal/singleflight
internal/godebug
internal/testlog
runtime/cgo
internal/intern
math/rand
errors
sort
internal/oserror
internal/safefilepath
io
path
vendor/golang.org/x/net/dns/dnsmessage
strconv
crypto/internal/nistec/fiat
syscall
container/heap
bytes
strings
hash
crypto/internal/randutil
hash/crc64
hash/crc32
github.com/shenwei356/kmers
vendor/golang.org/x/text/transform
github.com/twotwotwo/sorts
crypto/rc4
crypto
net/netip
reflect
bufio
net/http/internal/ascii
regexp/syntax
github.com/twotwotwo/sorts/sortutil
github.com/shenwei356/util/stats
internal/syscall/execenv
internal/syscall/unix
time
regexp
crypto/internal/nistec
github.com/shenwei356/natsort
github.com/acarl005/stripansi
context
io/fs
internal/poll
os
internal/fmtsort
encoding/binary
io/ioutil
path/filepath
golang.org/x/sys/cpu
vendor/golang.org/x/net/route
github.com/mattn/go-runewidth
fmt
encoding/base64
github.com/klauspost/compress/zstd/internal/xxhash
github.com/klauspost/compress/internal/snapref
crypto/cipher
github.com/zeebo/wyhash
crypto/md5
crypto/internal/edwards25519/field
github.com/zeebo/xxh3
vendor/golang.org/x/crypto/internal/poly1305
os/exec
encoding/pem
crypto/internal/edwards25519
github.com/shenwei356/pospop
crypto/des
crypto/internal/boring
vendor/golang.org/x/crypto/chacha20
crypto/hmac
crypto/sha1
crypto/sha256
crypto/aes
crypto/sha512
crypto/ecdh
vendor/golang.org/x/crypto/chacha20poly1305
net
vendor/golang.org/x/crypto/hkdf
github.com/mitchellh/go-homedir
github.com/iafan/cwalk
log
github.com/ulikunitz/xz/internal/xlog
net/url
encoding/hex
github.com/pkg/errors
net/http/internal
github.com/shenwei356/util/bytesize
github.com/shenwei356/util/byteutil
encoding/csv
github.com/will-rowe/nthash
github.com/shenwei356/kmcp/kmcp/cmd/index
os/user
mime/quotedprintable
flag
runtime/debug
github.com/shenwei356/bio/seq
mime
github.com/shenwei356/unik/v5
github.com/shenwei356/util/pathutil
compress/flate
encoding/json
vendor/golang.org/x/text/unicode/bidi
github.com/klauspost/compress/fse
github.com/tatsushid/go-prettytable
vendor/golang.org/x/net/http2/hpack
github.com/shenwei356/util/stringutil
text/template/parse
vendor/golang.org/x/text/unicode/norm
github.com/vbauerster/mpb/v5/decor
gopkg.in/yaml.v2
math/big
github.com/klauspost/compress/huff0
golang.org/x/sys/unix
github.com/ulikunitz/xz/lzma
compress/gzip
github.com/shenwei356/bio/sketches
github.com/klauspost/compress/flate
vendor/golang.org/x/text/secure/bidirule
text/template
github.com/ulikunitz/xz
github.com/mattn/go-isatty
github.com/edsrzf/mmap-go
github.com/vbauerster/mpb/v5/cwriter
github.com/klauspost/pgzip
github.com/mattn/go-colorable
github.com/vbauerster/mpb/v5
vendor/golang.org/x/net/idna
crypto/internal/boring/bbig
crypto/internal/bigmod
crypto/elliptic
encoding/asn1
crypto/rand
crypto/dsa
github.com/dustin/go-humanize
crypto/ed25519
github.com/klauspost/compress/zstd
crypto/rsa
crypto/x509/pkix
vendor/golang.org/x/crypto/cryptobyte
crypto/ecdsa
vendor/golang.org/x/net/http/httpproxy
log/syslog
net/textproto
crypto/x509
github.com/spf13/pflag
github.com/shenwei356/go-logging
vendor/golang.org/x/net/http/httpguts
mime/multipart
crypto/tls
github.com/spf13/cobra
net/http/httptrace
net/http
github.com/shenwei356/xopen
github.com/shenwei356/breader
github.com/shenwei356/bio/taxdump
github.com/shenwei356/bio/seqio/fastx
github.com/shenwei356/util/cliutil
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/kmcp