From nobody Mon Feb 20 20:39:02 2023 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4PLDm66xJFz3s8Wc for ; Mon, 20 Feb 2023 20:39:02 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4PLDm65BN6z3R4B for ; Mon, 20 Feb 2023 20:39:02 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1676925542; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc; bh=UDNQv5lwPYeS2xpL8gp9VNlNi+uTGb/Ae7zJex44wkk=; b=i51CbY+zTdyY77x1P+3oHAcXAAR8EjGN+hHdPg/AHUf4QyXmxlo9WCYklme3cNBUwyx/rg 3zBB6IHk3ZkNK40M0HXITs1w23qnUmB6W/CoS1ehp+JGlIPDimY+SrF6HB9H/q6umHQF6o EURn8FXkSnnktRkp3zSLd9VUwUWvVqt0QTDc1Oz2W+ir5M5VPHe67IC7rh/vXK93VIAAsJ 8fjJKd9mVoecq7QCAATclc0uKMZQANYMPrrZBUrooryKKjX5CbeSPceQSZKjJ1GuxNu2c6 +RtG7tsX0OBVCOAmg9/WAbZjOJrmOZAk1F5RH5pi2vPrKd6oG7g8+JEDkHYqdg== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1676925542; a=rsa-sha256; cv=none; b=WAo44CiPpZZ7zAA5zlc7ncMO4E34ZwpCDEd1j14UgunQqdHW1pI8ZDwjnc4vn6y+Wat16D bbUyB925KplwHQZMjj+fc6bWfFihUObGBeOIb0MGfdOW90LUfdILfoC+BS8+ZndkVIm8Ef MrxtN44ZizEhbOeqO0jIl1NTRNP7xLT9ABb3mHHOkiEbJovhPj6+3t7/XN6llg8Y00d4wr oxqR6S8CSHQFw97jy4paOtY29nBNDzGu6tx9/24Ac0w6NvJ1ZtIJGEDBy83LfBwy6X46ox UawpuY2Y0sOHgueIVkzKl+8tVkIW3W6ZBZAUghBzaUYgf5YNr2GxNDSD2HJKtQ== Received: from ampere3.nyi.freebsd.org (ampere3.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:26]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4PLDm64FvGzv6d for ; Mon, 20 Feb 2023 20:39:02 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from ampere3.nyi.freebsd.org (localhost [127.0.0.1]) by ampere3.nyi.freebsd.org (8.16.1/8.16.1) with ESMTP id 31KKd268096148 for ; Mon, 20 Feb 2023 20:39:02 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by ampere3.nyi.freebsd.org (8.16.1/8.16.1/Submit) id 31KKd2NT096145; Mon, 20 Feb 2023 20:39:02 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Mon, 20 Feb 2023 20:39:02 GMT From: pkg-fallout@FreeBSD.org Message-Id: <202302202039.31KKd2NT096145@ampere3.nyi.freebsd.org> To: pkg-fallout@FreeBSD.org Subject: [package - 131releng-armv7-default][science/gromacs] Failed for gromacs-2022.4 in configure X-ThisMailContainsUnwantedMimeParts: N List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: https://pkg-status.freebsd.org/ampere3/data/131releng-armv7-default/b4e310378258/logs/gromacs-2022.4.log Build URL: https://pkg-status.freebsd.org/ampere3/build.html?mastername=131releng-armv7-default&build=b4e310378258 Log: =>> Building science/gromacs build started at Mon Feb 20 20:38:22 UTC 2023 port directory: /usr/ports/science/gromacs package name: gromacs-2022.4 building for: FreeBSD 131releng-armv7-default-job-01 13.1-RELEASE-p6 FreeBSD 13.1-RELEASE-p6 1301000 arm maintained by: yuri@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-23-ga7f8d188 Host OSVERSION: 1400073 Jail OSVERSION: 1301000 Job Id: 01 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1301000 UNAME_v=FreeBSD 13.1-RELEASE-p6 1301000 UNAME_r=13.1-RELEASE-p6 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-23-ga7f8d188 MASTERMNT=/usr/local/poudriere/data/.m/131releng-armv7-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/131releng-armv7-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=131releng-armv7-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/131releng-armv7-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for gromacs-2022.4: ATLAS=off: Use ATLAS for BLAS and LAPACK FLOAT=off: Use single instead of double precision LEGACY=on: Install legacy API OPENCL=off: Heterogeneous computing via OpenCL OPENMP=on: Parallel processing support via OpenMP SIMD=off: Use CPU-specific optimizations X11=on: X11 (graphics) support ====> Multiprocessing: you have to select exactly one of them NOMP=off: No multiprocessing support MPICH=off: Parallel processing support via MPICH 3 OPENMPI=off: Parallel processing support via Open MPI THREAD_MPI=on: Build a thread-MPI-based multithreaded version of GROMACS ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran12" F90="gfortran12" FC="gfortran12" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc12" ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PKG_CONFIG=pkgconf PYTHON="/usr/local/bin/python3.9" BLA_VENDOR="Generic" XDG_DATA_HOME=/wrkdirs/usr/ports/science/gromacs/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/gromacs/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/gromacs/work/.cache HOME=/wrkdirs/usr/ports/science/gromacs/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/gromacs/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/gromacs/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran12" F90="gfortran12" FC="gfortran12" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc12" PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/science/gromacs/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/gromacs/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/gromacs/work/.cache HOME=/wrkdirs/usr/ports/science/gromacs/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/gromacs/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/gromacs/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" O BJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc12 -L/usr/local/lib/gcc12 -B/usr/local/bin -L/usr/local/lib -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- ATLAS="@comment " NO_ATLAS="" FLOAT="@comment " NO_FLOAT="" SUFFIX_D="_d" LEGACY="" NO_LEGACY="@comment " MPICH="@comment " NO_MPICH="" NOMP="@comment " NO_NOMP="" OPENCL="@comment " NO_OPENCL="" OPENMP="" NO_OPENMP="@comment " OPENMPI="@comment " NO_OPENMPI="" SIMD="@comment " NO_SIMD="" THREAD_MPI="" NO_THREAD_MPI="@comment " SUFFIX_MPI="" X11="" NO_X11="@comment " CMAKE_BUILD_TYPE="release" GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" GTK4_VERSION="4.0.0" PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=13.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.32.1 PERL_VER=5.32 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.32 DOCSDI R="share/doc/gromacs" EXAMPLESDIR="share/examples/gromacs" DATADIR="share/gromacs" WWWDIR="www/gromacs" ETCDIR="etc/gromacs" --End PLIST_SUB-- --SUB_LIST-- ATLAS="@comment " NO_ATLAS="" FLOAT="@comment " NO_FLOAT="" LEGACY="" NO_LEGACY="@comment " MPICH="@comment " NO_MPICH="" NOMP="@comment " NO_NOMP="" OPENCL="@comment " NO_OPENCL="" OPENMP="" NO_OPENMP="@comment " OPENMPI="@comment " NO_OPENMPI="" SIMD="@comment " NO_SIMD="" THREAD_MPI="" NO_THREAD_MPI="@comment " X11="" NO_X11="@comment " PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/gromacs DOCSDIR=/usr/local/share/doc/gromacs EXAMPLESDIR=/usr/local/share/examples/gromacs WWWDIR=/usr/local/www/gromacs ETCDIR=/usr/local/etc/gromacs --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: armv7-unknown-freebsd13.1-gnueabihf Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: armv7-unknown-freebsd13.1-gnueabihf Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_53255a77=yes CC_OUTPUT_921dbbb2_911cfe02=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes CC_OUTPUT_921dbbb2_af59ad06=yes CC_OUTPUT_921dbbb2_a15f3fcf=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: armv7-unknown-freebsd13.1-gnueabihf Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=armv7 OPSYS=FreeBSD _OSRELEASE=13.1-RELEASE-p6 OSREL=13.1 OSVERSION=1301000 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 1048576 stack size (kbytes, -s) 1048576 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License LGPL21 accepted by the user =========================================================================== =================================================== ===> gromacs-2022.4 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.19.1_1.pkg [131releng-armv7-default-job-01] Installing pkg-1.19.1_1... [131releng-armv7-default-job-01] Extracting pkg-1.19.1_1: .......... done ===> gromacs-2022.4 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of gromacs-2022.4 =========================================================================== =================================================== =========================================================================== =================================================== ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by gromacs-2022.4 for building =========================================================================== =================================================== ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by gromacs-2022.4 for building => SHA256 Checksum OK for gromacs-2022.4.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by gromacs-2022.4 for building ===> Extracting for gromacs-2022.4 => SHA256 Checksum OK for gromacs-2022.4.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for gromacs-2022.4 =========================================================================== =================================================== ===> gromacs-2022.4 depends on package: boost-libs>=1.44 - not found ===> Installing existing package /packages/All/boost-libs-1.81.0.pkg ===== Message from boost-libs-1.81.0: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===> gromacs-2022.4 depends on package: boost-libs>=1.44 - found ===> Returning to build of gromacs-2022.4 ===> gromacs-2022.4 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.25.1.pkg [131releng-armv7-default-job-01] Installing cmake-core-3.25.1... [131releng-armv7-default-job-01] `-- Installing expat-2.5.0... [131releng-armv7-default-job-01] `-- Extracting expat-2.5.0: .......... done [131releng-armv7-default-job-01] `-- Installing jsoncpp-1.9.5... [131releng-armv7-default-job-01] `-- Extracting jsoncpp-1.9.5: .......... done [131releng-armv7-default-job-01] `-- Installing libuv-1.44.2... [131releng-armv7-default-job-01] `-- Extracting libuv-1.44.2: .......... done [131releng-armv7-default-job-01] `-- Installing rhash-1.4.3... [131releng-armv7-default-job-01] | `-- Installing gettext-runtime-0.21.1... [131releng-armv7-default-job-01] | | `-- Installing indexinfo-0.3.1... [131releng-armv7-default-job-01] | | `-- Extracting indexinfo-0.3.1: .... done [131releng-armv7-default-job-01] | `-- Extracting gettext-runtime-0.21.1: .......... done [131releng-armv7-default-job-01] `-- Extracting rhash-1.4.3: .......... done [131releng-armv7-default-job-01] Extracting cmake-core-3.25.1: .......... done ===> gromacs-2022.4 depends on file: /usr/local/bin/cmake - found ===> Returning to build of gromacs-2022.4 ===> gromacs-2022.4 depends on executable: gfortran12 - not found ===> Installing existing package /packages/All/gcc12-12.2.0_5.pkg [131releng-armv7-default-job-01] Installing gcc12-12.2.0_5... [131releng-armv7-default-job-01] `-- Installing binutils-2.39,1... [131releng-armv7-default-job-01] `-- Extracting binutils-2.39,1: .......... done [131releng-armv7-default-job-01] `-- Installing gmp-6.2.1... [131releng-armv7-default-job-01] `-- Extracting gmp-6.2.1: .......... done [131releng-armv7-default-job-01] `-- Installing mpc-1.2.1... [131releng-armv7-default-job-01] | `-- Installing mpfr-4.2.0,1... [131releng-armv7-default-job-01] | `-- Extracting mpfr-4.2.0,1: .......... done [131releng-armv7-default-job-01] `-- Extracting mpc-1.2.1: ......... done [131releng-armv7-default-job-01] Extracting gcc12-12.2.0_5: .......... done ===== Message from gcc12-12.2.0_5: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc12 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> gromacs-2022.4 depends on executable: gfortran12 - found ===> Returning to build of gromacs-2022.4 ===> gromacs-2022.4 depends on package: pkgconf>=1.3.0_1 - not found ===> Installing existing package /packages/All/pkgconf-1.8.1,1.pkg [131releng-armv7-default-job-01] Installing pkgconf-1.8.1,1... [131releng-armv7-default-job-01] Extracting pkgconf-1.8.1,1: .......... done ===> gromacs-2022.4 depends on package: pkgconf>=1.3.0_1 - found ===> Returning to build of gromacs-2022.4 ===> gromacs-2022.4 depends on file: /usr/local/bin/python3.9 - not found ===> Installing existing package /packages/All/python39-3.9.16.pkg [131releng-armv7-default-job-01] Installing python39-3.9.16... [131releng-armv7-default-job-01] `-- Installing libffi-3.4.4... [131releng-armv7-default-job-01] `-- Extracting libffi-3.4.4: .......... done [131releng-armv7-default-job-01] `-- Installing mpdecimal-2.5.1... [131releng-armv7-default-job-01] `-- Extracting mpdecimal-2.5.1: .......... done [131releng-armv7-default-job-01] `-- Installing readline-8.2.0... [131releng-armv7-default-job-01] `-- Extracting readline-8.2.0: .......... done [131releng-armv7-default-job-01] Extracting python39-3.9.16: .......... done ===== Message from python39-3.9.16: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 ===> gromacs-2022.4 depends on file: /usr/local/bin/python3.9 - found ===> Returning to build of gromacs-2022.4 ===> gromacs-2022.4 depends on file: /usr/local/bin/as - found ===> gromacs-2022.4 depends on package: perl5>=5.32.r0<5.33 - not found ===> Installing existing package /packages/All/perl5-5.32.1_3.pkg [131releng-armv7-default-job-01] Installing perl5-5.32.1_3... [131releng-armv7-default-job-01] Extracting perl5-5.32.1_3: .......... done ===> gromacs-2022.4 depends on package: perl5>=5.32.r0<5.33 - found ===> Returning to build of gromacs-2022.4 ===> gromacs-2022.4 depends on file: /usr/local/libdata/pkgconfig/ice.pc - not found ===> Installing existing package /packages/All/libICE-1.1.0_1,1.pkg [131releng-armv7-default-job-01] Installing libICE-1.1.0_1,1... [131releng-armv7-default-job-01] Extracting libICE-1.1.0_1,1: .......... done ===> gromacs-2022.4 depends on file: /usr/local/libdata/pkgconfig/ice.pc - found ===> Returning to build of gromacs-2022.4 ===> gromacs-2022.4 depends on file: /usr/local/libdata/pkgconfig/sm.pc - not found ===> Installing existing package /packages/All/libSM-1.2.3,1.pkg [131releng-armv7-default-job-01] Installing libSM-1.2.3,1... [131releng-armv7-default-job-01] Extracting libSM-1.2.3,1: .......... done ===> gromacs-2022.4 depends on file: /usr/local/libdata/pkgconfig/sm.pc - found ===> Returning to build of gromacs-2022.4 ===> gromacs-2022.4 depends on file: /usr/local/libdata/pkgconfig/xext.pc - not found ===> Installing existing package /packages/All/libXext-1.3.4,1.pkg [131releng-armv7-default-job-01] Installing libXext-1.3.4,1... [131releng-armv7-default-job-01] `-- Installing libX11-1.7.2,1... [131releng-armv7-default-job-01] | `-- Installing libxcb-1.15... [131releng-armv7-default-job-01] | | `-- Installing libXau-1.0.9... [131releng-armv7-default-job-01] | | `-- Extracting libXau-1.0.9: .......... done [131releng-armv7-default-job-01] | | `-- Installing libXdmcp-1.1.3... [131releng-armv7-default-job-01] | | `-- Installing xorgproto-2022.1... [131releng-armv7-default-job-01] | | `-- Extracting xorgproto-2022.1: .......... done [131releng-armv7-default-job-01] | | `-- Extracting libXdmcp-1.1.3: ......... done [131releng-armv7-default-job-01] | | `-- Installing libpthread-stubs-0.4... [131releng-armv7-default-job-01] | | `-- Extracting libpthread-stubs-0.4: .... done [131releng-armv7-default-job-01] | `-- Extracting libxcb-1.15: .......... done [131releng-armv7-default-job-01] `-- Extracting libX11-1.7.2,1: .......... done [131releng-armv7-default-job-01] Extracting libXext-1.3.4,1: .......... done ===> gromacs-2022.4 depends on file: /usr/local/libdata/pkgconfig/xext.pc - found ===> Returning to build of gromacs-2022.4 ===> gromacs-2022.4 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found =========================================================================== =================================================== ===> gromacs-2022.4 depends on shared library: libhwloc.so - not found ===> Installing existing package /packages/All/hwloc2-2.8.0.pkg [131releng-armv7-default-job-01] Installing hwloc2-2.8.0... [131releng-armv7-default-job-01] `-- Installing level-zero-1.9.4... [131releng-armv7-default-job-01] `-- Extracting level-zero-1.9.4: .......... done [131releng-armv7-default-job-01] `-- Installing libpciaccess-0.16... [131releng-armv7-default-job-01] | `-- Installing pciids-20230126... [131releng-armv7-default-job-01] | `-- Extracting pciids-20230126: ..... done [131releng-armv7-default-job-01] `-- Extracting libpciaccess-0.16: ......... done [131releng-armv7-default-job-01] `-- Installing libxml2-2.10.3_1... [131releng-armv7-default-job-01] `-- Extracting libxml2-2.10.3_1: .......... done [131releng-armv7-default-job-01] Extracting hwloc2-2.8.0: .......... done ===> gromacs-2022.4 depends on shared library: libhwloc.so - found (/usr/local/lib/libhwloc.so) ===> Returning to build of gromacs-2022.4 ===> gromacs-2022.4 depends on shared library: libfftw3.so - not found ===> Installing existing package /packages/All/fftw3-3.3.10_2.pkg [131releng-armv7-default-job-01] Installing fftw3-3.3.10_2... [131releng-armv7-default-job-01] Extracting fftw3-3.3.10_2: .......... done ===> gromacs-2022.4 depends on shared library: libfftw3.so - found (/usr/local/lib/libfftw3.so) ===> Returning to build of gromacs-2022.4 ===> gromacs-2022.4 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so) ===> gromacs-2022.4 depends on shared library: libblas.so - not found ===> Installing existing package /packages/All/blas-3.11.0.pkg [131releng-armv7-default-job-01] Installing blas-3.11.0... [131releng-armv7-default-job-01] Extracting blas-3.11.0: ........ done ===> gromacs-2022.4 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so) ===> Returning to build of gromacs-2022.4 ===> gromacs-2022.4 depends on shared library: liblapack.so - not found ===> Installing existing package /packages/All/lapack-3.11.0.pkg [131releng-armv7-default-job-01] Installing lapack-3.11.0... [131releng-armv7-default-job-01] Extracting lapack-3.11.0: .......... done ===> gromacs-2022.4 depends on shared library: liblapack.so - found (/usr/local/lib/liblapack.so) ===> Returning to build of gromacs-2022.4 =========================================================================== =================================================== ===> Configuring for gromacs-2022.4 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/science/gromacs/work/.build -- The C compiler identification is Clang 13.0.0 -- The CXX compiler identification is Clang 13.0.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test CXX17_COMPILES -- Performing Test CXX17_COMPILES - Success CMake Warning at cmake/gmxPythonDiscovery.cmake:51 (message): Specifying FindPython3 artifacts may complicate consistent Python detection in projects bundled with GROMACS. See https://cmake.org/cmake/help/latest/module/FindPython3.html#artifacts-specification Call Stack (most recent call first): CMakeLists.txt:72 (include) -- Found Python3: /usr/local/bin/python3.9 (found suitable version "3.9.16", minimum required is "3.7") found components: Interpreter Development Development.Module Development.Embed CMake Error at /wrkdirs/usr/ports/science/gromacs/work/.build/CMakeFiles/CMakeTmp/CMakeLists.txt:16 (add_executable): No SOURCES given to target: cmTC_e95d1 CMake Error at /usr/local/share/cmake/Modules/FindOpenMP.cmake:261 (try_compile): Failed to generate test project build system. Call Stack (most recent call first): /usr/local/share/cmake/Modules/FindOpenMP.cmake:537 (_OPENMP_GET_FLAGS) cmake/gmxManageOpenMP.cmake:41 (find_package) CMakeLists.txt:295 (include) -- Configuring incomplete, errors occurred! See also "/wrkdirs/usr/ports/science/gromacs/work/.build/CMakeFiles/CMakeOutput.log". *** Error code 1 Stop. make: stopped in /usr/ports/science/gromacs