[package - 131releng-armv7-quarterly][science/py-pyscf] Failed for py39-pyscf-2.1.1 in build
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Date: Mon, 06 Feb 2023 21:25:17 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/ampere1/data/131releng-armv7-quarterly/232dc684edfe/logs/py39-pyscf-2.1.1.log
Build URL: https://pkg-status.freebsd.org/ampere1/build.html?mastername=131releng-armv7-quarterly&build=232dc684edfe
Log:
=>> Building science/py-pyscf
build started at Mon Feb 6 21:24:09 UTC 2023
port directory: /usr/ports/science/py-pyscf
package name: py39-pyscf-2.1.1
building for: FreeBSD 131releng-armv7-quarterly-job-05 13.1-RELEASE-p5 FreeBSD 13.1-RELEASE-p5 1301000 arm
maintained by: yuri@FreeBSD.org
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=======================<phase: check-sanity >============================
===> License BSD2CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> py39-pyscf-2.1.1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.19.0.pkg
[131releng-armv7-quarterly-job-05] Installing pkg-1.19.0...
[131releng-armv7-quarterly-job-05] Extracting pkg-1.19.0: .......... done
===> py39-pyscf-2.1.1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py39-pyscf-2.1.1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py39-pyscf-2.1.1 for building
===========================================================================
=======================<phase: checksum >============================
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py39-pyscf-2.1.1 for building
=> SHA256 Checksum OK for pyscf-pyscf-v2.1.1_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py39-pyscf-2.1.1 for building
===> Extracting for py39-pyscf-2.1.1
=> SHA256 Checksum OK for pyscf-pyscf-v2.1.1_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for py39-pyscf-2.1.1
===> Applying FreeBSD patches for py39-pyscf-2.1.1 from /usr/ports/science/py-pyscf/files
===========================================================================
=======================<phase: build-depends >============================
===> py39-pyscf-2.1.1 depends on package: py39-numpy>=1.16,1<1.24,1 - not found
===> Installing existing package /packages/All/py39-numpy-1.23.5_1,1.pkg
[131releng-armv7-quarterly-job-05] Installing py39-numpy-1.23.5_1,1...
[131releng-armv7-quarterly-job-05] `-- Installing gcc12-12.2.0_5...
[131releng-armv7-quarterly-job-05] | `-- Installing binutils-2.39,1...
[131releng-armv7-quarterly-job-05] | | `-- Installing gettext-runtime-0.21.1...
[131releng-armv7-quarterly-job-05] | | `-- Installing indexinfo-0.3.1...
[131releng-armv7-quarterly-job-05] | | `-- Extracting indexinfo-0.3.1: .... done
[131releng-armv7-quarterly-job-05] | | `-- Extracting gettext-runtime-0.21.1: .......... done
[131releng-armv7-quarterly-job-05] | `-- Extracting binutils-2.39,1: .......... done
[131releng-armv7-quarterly-job-05] | `-- Installing gmp-6.2.1...
[131releng-armv7-quarterly-job-05] | `-- Extracting gmp-6.2.1: .......... done
[131releng-armv7-quarterly-job-05] | `-- Installing mpc-1.2.1...
[131releng-armv7-quarterly-job-05] | | `-- Installing mpfr-4.1.1...
[131releng-armv7-quarterly-job-05] | | `-- Extracting mpfr-4.1.1: .......... done
<snip>
const int jsh1 = jshls[1]; \
^
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/vhf/nr_direct.c:216:9: warning: unused variable 'ksh1' [-Wunused-variable]
DECLARE_ALL;
^
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/vhf/nr_direct.c:50:19: note: expanded from macro 'DECLARE_ALL'
const int ksh1 = kshls[1]; \
^
[ 44%] Building C object vhf/CMakeFiles/cvhf.dir/optimizer.c.o
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/vhf/optimizer.c:187:13: warning: unknown pragma ignored [-Wunknown-pragmas]
#pragma GCC ivdep
^
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/vhf/optimizer.c:204:13: warning: unknown pragma ignored [-Wunknown-pragmas]
#pragma GCC ivdep
^
6 warnings generated.
[ 45%] Building C object vhf/CMakeFiles/cvhf.dir/nr_direct_dot.c.o
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/vhf/nr_direct_dot.c:155:13: warning: unknown pragma ignored [-Wunknown-pragmas]
#pragma GCC ivdep
^
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/vhf/nr_direct_dot.c:194:13: warning: unknown pragma ignored [-Wunknown-pragmas]
#pragma GCC ivdep
^
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/vhf/nr_direct_dot.c:324:13: warning: unknown pragma ignored [-Wunknown-pragmas]
#pragma GCC ivdep
^
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/vhf/nr_direct_dot.c:368:13: warning: unknown pragma ignored [-Wunknown-pragmas]
#pragma GCC ivdep
^
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/vhf/nr_direct_dot.c:506:13: warning: unknown pragma ignored [-Wunknown-pragmas]
#pragma GCC ivdep
^
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/vhf/nr_direct_dot.c:550:13: warning: unknown pragma ignored [-Wunknown-pragmas]
#pragma GCC ivdep
^
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/vhf/nr_direct_dot.c:700:13: warning: unknown pragma ignored [-Wunknown-pragmas]
#pragma GCC ivdep
^
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/vhf/nr_direct_dot.c:747:13: warning: unknown pragma ignored [-Wunknown-pragmas]
#pragma GCC ivdep
^
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/vhf/nr_direct_dot.c:1176:13: warning: unknown pragma ignored [-Wunknown-pragmas]
#pragma GCC ivdep
^
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/vhf/nr_direct_dot.c:1235:13: warning: unknown pragma ignored [-Wunknown-pragmas]
#pragma GCC ivdep
^
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/vhf/nr_direct_dot.c:1600:13: warning: unknown pragma ignored [-Wunknown-pragmas]
#pragma GCC ivdep
^
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/vhf/nr_direct_dot.c:1641:13: warning: unknown pragma ignored [-Wunknown-pragmas]
#pragma GCC ivdep
^
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/vhf/nr_direct_dot.c:1774:13: warning: unknown pragma ignored [-Wunknown-pragmas]
#pragma GCC ivdep
^
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/vhf/nr_direct_dot.c:1825:13: warning: unknown pragma ignored [-Wunknown-pragmas]
#pragma GCC ivdep
^
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/vhf/nr_direct_dot.c:1962:13: warning: unknown pragma ignored [-Wunknown-pragmas]
#pragma GCC ivdep
^
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/vhf/nr_direct_dot.c:2008:13: warning: unknown pragma ignored [-Wunknown-pragmas]
#pragma GCC ivdep
^
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/vhf/nr_direct_dot.c:2362:13: warning: unknown pragma ignored [-Wunknown-pragmas]
#pragma GCC ivdep
^
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/vhf/nr_direct_dot.c:2416:13: warning: unknown pragma ignored [-Wunknown-pragmas]
#pragma GCC ivdep
^
2 warnings generated.
[ 46%] Building C object vhf/CMakeFiles/cvhf.dir/time_rev.c.o
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/vhf/nr_direct_dot.c:2765:13: warning: unknown pragma ignored [-Wunknown-pragmas]
#pragma GCC ivdep
^
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/vhf/nr_direct_dot.c:2811:13: warning: unknown pragma ignored [-Wunknown-pragmas]
#pragma GCC ivdep
^
[ 48%] Building C object vhf/CMakeFiles/cvhf.dir/r_direct_o1.c.o
[ 49%] Building C object vhf/CMakeFiles/cvhf.dir/rkb_screen.c.o
[ 50%] Building C object vhf/CMakeFiles/cvhf.dir/r_direct_dot.c.o
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/vhf/r_direct_dot.c:490:25: warning: variable 'peri' set but not used [-Wunused-but-set-variable]
double complex *peri = eri;
^
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/vhf/r_direct_dot.c:555:25: warning: variable 'peri' set but not used [-Wunused-but-set-variable]
double complex *peri = eri;
^
2 warnings generated.
[ 51%] Building C object vhf/CMakeFiles/cvhf.dir/rah_direct_dot.c.o
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/vhf/rah_direct_dot.c:294:25: warning: variable 'peri' set but not used [-Wunused-but-set-variable]
double complex *peri = eri;
^
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/vhf/rah_direct_dot.c:354:25: warning: variable 'peri' set but not used [-Wunused-but-set-variable]
double complex *peri = eri;
^
2 warnings generated.
[ 53%] Building C object vhf/CMakeFiles/cvhf.dir/rha_direct_dot.c.o
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/vhf/rha_direct_dot.c:291:25: warning: variable 'peri' set but not used [-Wunused-but-set-variable]
double complex *peri = eri;
^
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/vhf/rha_direct_dot.c:351:25: warning: variable 'peri' set but not used [-Wunused-but-set-variable]
double complex *peri = eri;
^
2 warnings generated.
[ 54%] Building C object vhf/CMakeFiles/cvhf.dir/hessian_screen.c.o
[ 55%] Building C object vhf/CMakeFiles/cvhf.dir/nr_sgx_direct.c.o
20 warnings generated.
[ 56%] Linking C shared library /wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/libcvhf.so
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/build/temp.freebsd-13.1-RELEASE-p5-arm-cpython-39'
[ 56%] Built target cvhf
gmake[3]: Entering directory '/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/build/temp.freebsd-13.1-RELEASE-p5-arm-cpython-39'
gmake[3]: Entering directory '/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/build/temp.freebsd-13.1-RELEASE-p5-arm-cpython-39'
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/build/temp.freebsd-13.1-RELEASE-p5-arm-cpython-39'
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/build/temp.freebsd-13.1-RELEASE-p5-arm-cpython-39'
gmake[3]: Entering directory '/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/build/temp.freebsd-13.1-RELEASE-p5-arm-cpython-39'
gmake[3]: Entering directory '/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/build/temp.freebsd-13.1-RELEASE-p5-arm-cpython-39'
[ 57%] Building C object ao2mo/CMakeFiles/ao2mo.dir/restore_eri.c.o
[ 59%] Building C object pbc/CMakeFiles/pbc.dir/ft_ao.c.o
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/pbc/ft_ao.c:822:13: warning: unknown pragma ignored [-Wunknown-pragmas]
#pragma GCC ivdep
^
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/pbc/ft_ao.c:835:13: warning: unknown pragma ignored [-Wunknown-pragmas]
#pragma GCC ivdep
^
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/pbc/ft_ao.c:846:13: warning: unknown pragma ignored [-Wunknown-pragmas]
#pragma GCC ivdep
^
[ 60%] Building C object ao2mo/CMakeFiles/ao2mo.dir/nr_ao2mo.c.o
3 warnings generated.
[ 61%] Building C object pbc/CMakeFiles/pbc.dir/fill_ints.c.o
[ 62%] Building C object ao2mo/CMakeFiles/ao2mo.dir/nr_incore.c.o
[ 63%] Building C object ao2mo/CMakeFiles/ao2mo.dir/r_ao2mo.c.o
[ 65%] Building C object pbc/CMakeFiles/pbc.dir/fill_ints_sr.c.o
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/pbc/fill_ints_sr.c:149:39: warning: variable 'empty' set but not used [-Wunused-but-set-variable]
int m, msh0, msh1, dmjc, ish, di, empty;
^
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/pbc/fill_ints_sr.c:538:42: error: unknown type name 'int8_t'; did you mean '__int8_t'?
CINTOpt *cintopt, int8_t *shlpr_mask,
^~~~~~
__int8_t
/usr/include/machine/_types.h:51:22: note: '__int8_t' declared here
typedef signed char __int8_t;
^
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/pbc/fill_ints_sr.c:781:34: warning: variable 'empty' set but not used [-Wunused-but-set-variable]
int i, m, msh0, msh1, dijmc, empty;
^
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/pbc/fill_ints_sr.c:975:43: error: unknown type name 'int8_t'; did you mean '__int8_t'?
int *cell_loc_bvk, int8_t *shlpr_mask,
^~~~~~
__int8_t
/usr/include/machine/_types.h:51:22: note: '__int8_t' declared here
typedef signed char __int8_t;
^
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/pbc/fill_ints_sr.c:1072:34: warning: variable 'empty' set but not used [-Wunused-but-set-variable]
int i, m, msh0, msh1, dijmc, empty;
^
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/pbc/fill_ints_sr.c:1246:20: error: unknown type name 'int8_t'; did you mean '__int8_t'?
int8_t *shlpr_mask,
^~~~~~
__int8_t
/usr/include/machine/_types.h:51:22: note: '__int8_t' declared here
typedef signed char __int8_t;
^
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/pbc/fill_ints_sr.c:1477:54: warning: variable 'empty' set but not used [-Wunused-but-set-variable]
int i, m, msh0, msh1, dijm, dijmc, dijmk, dijkc, empty;
^
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/pbc/fill_ints_sr.c:1660:44: error: unknown type name 'int8_t'; did you mean '__int8_t'?
int *cell_loc_bvk, int8_t *shlpr_mask,
^~~~~~
__int8_t
/usr/include/machine/_types.h:51:22: note: '__int8_t' declared here
typedef signed char __int8_t;
^
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/pbc/fill_ints_sr.c:1759:54: warning: variable 'empty' set but not used [-Wunused-but-set-variable]
int i, m, msh0, msh1, dijm, dijmc, dijmk, dijkc, empty;
^
/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/pbc/fill_ints_sr.c:1942:21: error: unknown type name 'int8_t'; did you mean '__int8_t'?
int8_t *shlpr_mask,
^~~~~~
__int8_t
/usr/include/machine/_types.h:51:22: note: '__int8_t' declared here
typedef signed char __int8_t;
^
5 warnings and 5 errors generated.
gmake[3]: *** [pbc/CMakeFiles/pbc.dir/build.make:104: pbc/CMakeFiles/pbc.dir/fill_ints_sr.c.o] Error 1
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/build/temp.freebsd-13.1-RELEASE-p5-arm-cpython-39'
gmake[2]: *** [CMakeFiles/Makefile2:489: pbc/CMakeFiles/pbc.dir/all] Error 2
gmake[2]: *** Waiting for unfinished jobs....
[ 66%] Linking C shared library /wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/pyscf/lib/libao2mo.so
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/build/temp.freebsd-13.1-RELEASE-p5-arm-cpython-39'
[ 66%] Built target ao2mo
gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/build/temp.freebsd-13.1-RELEASE-p5-arm-cpython-39'
gmake[1]: *** [Makefile:91: all] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.1.1/build/temp.freebsd-13.1-RELEASE-p5-arm-cpython-39'
error: command '/usr/local/bin/cmake' failed with exit code 2
*** Error code 1
Stop.
make: stopped in /usr/ports/science/py-pyscf