[package - 131releng-armv7-default][graphics/elastix] Failed for elastix-5.0.1.20220218_1 in configure
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Date: Sun, 05 Feb 2023 22:46:11 UTC
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: https://pkg-status.freebsd.org/ampere3/data/131releng-armv7-default/8881966b49a8/logs/elastix-5.0.1.20220218_1.log Build URL: https://pkg-status.freebsd.org/ampere3/build.html?mastername=131releng-armv7-default&build=8881966b49a8 Log: =>> Building graphics/elastix build started at Sun Feb 5 22:45:44 UTC 2023 port directory: /usr/ports/graphics/elastix package name: elastix-5.0.1.20220218_1 building for: FreeBSD 131releng-armv7-default-job-03 13.1-RELEASE-p5 FreeBSD 13.1-RELEASE-p5 1301000 arm maintained by: yuri@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-23-ga7f8d188 Host OSVERSION: 1400073 Jail OSVERSION: 1301000 Job Id: 03 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1301000 UNAME_v=FreeBSD 13.1-RELEASE-p5 1301000 UNAME_r=13.1-RELEASE-p5 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-23-ga7f8d188 MASTERMNT=/usr/local/poudriere/data/.m/131releng-armv7-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/131releng-armv7-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=131releng-armv7-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/131releng-armv7-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/graphics/elastix/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/graphics/elastix/work XDG_CACHE_HOME=/wrkdirs/usr/ports/graphics/elastix/work/.cache HOME=/wrkdirs/usr/ports/graphics/elastix/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/graphics/elastix/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/graphics/elastix/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/graphics/elastix/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/graphics/elastix/work XDG_CACHE_HOME=/wrkdirs/usr/ports/graphics/elastix/work/.cache HOME=/wrkdirs/usr/ports/graphics/elastix/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/graphics/elastix/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/graphics/elastix/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/graphics/elastix/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL _LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" OSREL=13.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/elastix" EXAMPLESDIR="share/examples/elastix" DATADIR="share/elastix" WWWDIR="www/elastix" ETCDIR="etc/elastix" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/elastix DOCSDIR=/usr/local/share/doc/elastix EXAMPLESDIR=/usr/local/share/examples/elastix WWWDIR=/usr/local/www/elastix ETCDIR=/usr/local/etc/elastix --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: armv7-unknown-freebsd13.1-gnueabihf Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: armv7-unknown-freebsd13.1-gnueabihf Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_53255a77=yes CC_OUTPUT_921dbbb2_911cfe02=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes CC_OUTPUT_921dbbb2_af59ad06=yes CC_OUTPUT_921dbbb2_a15f3fcf=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: armv7-unknown-freebsd13.1-gnueabihf Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=armv7 OPSYS=FreeBSD _OSRELEASE=13.1-RELEASE-p5 OSREL=13.1 OSVERSION=1301000 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 1048576 stack size (kbytes, -s) 1048576 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License APACHE20 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> elastix-5.0.1.20220218_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.19.0.pkg [131releng-armv7-default-job-03] Installing pkg-1.19.0... [131releng-armv7-default-job-03] Extracting pkg-1.19.0: .......... done ===> elastix-5.0.1.20220218_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of elastix-5.0.1.20220218_1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by elastix-5.0.1.20220218_1 for building =========================================================================== =======================<phase: checksum >============================ ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by elastix-5.0.1.20220218_1 for building => SHA256 Checksum OK for SuperElastix-elastix-5.0.1-20220218-last-itk5.2-support_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by elastix-5.0.1.20220218_1 for building ===> Extracting for elastix-5.0.1.20220218_1 => SHA256 Checksum OK for SuperElastix-elastix-5.0.1-20220218-last-itk5.2-support_GH0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for elastix-5.0.1.20220218_1 =========================================================================== =======================<phase: build-depends >============================ ===> elastix-5.0.1.20220218_1 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.25.1.pkg [131releng-armv7-default-job-03] Installing cmake-core-3.25.1... [131releng-armv7-default-job-03] `-- Installing expat-2.5.0... [131releng-armv7-default-job-03] `-- Extracting expat-2.5.0: .......... done [131releng-armv7-default-job-03] `-- Installing jsoncpp-1.9.5... [131releng-armv7-default-job-03] `-- Extracting jsoncpp-1.9.5: .......... done [131releng-armv7-default-job-03] `-- Installing libuv-1.44.2... [131releng-armv7-default-job-03] `-- Extracting libuv-1.44.2: .......... done [131releng-armv7-default-job-03] `-- Installing rhash-1.4.3... [131releng-armv7-default-job-03] | `-- Installing gettext-runtime-0.21.1... [131releng-armv7-default-job-03] | | `-- Installing indexinfo-0.3.1... [131releng-armv7-default-job-03] | | `-- Extracting indexinfo-0.3.1: .... done [131releng-armv7-default-job-03] | `-- Extracting gettext-runtime-0.21.1: .......... done [131releng-armv7-default-job-03] `-- Extracting rhash-1.4.3: .......... done [131releng-armv7-default-job-03] Extracting cmake-core-3.25.1: .......... done ===> elastix-5.0.1.20220218_1 depends on file: /usr/local/bin/cmake - found ===> Returning to build of elastix-5.0.1.20220218_1 ===> elastix-5.0.1.20220218_1 depends on executable: ninja - not found ===> Installing existing package /packages/All/ninja-1.11.1,2.pkg [131releng-armv7-default-job-03] Installing ninja-1.11.1,2... [131releng-armv7-default-job-03] `-- Installing python39-3.9.16... [131releng-armv7-default-job-03] | `-- Installing libffi-3.4.4... [131releng-armv7-default-job-03] | `-- Extracting libffi-3.4.4: .......... done [131releng-armv7-default-job-03] | `-- Installing mpdecimal-2.5.1... [131releng-armv7-default-job-03] | `-- Extracting mpdecimal-2.5.1: .......... done [131releng-armv7-default-job-03] | `-- Installing readline-8.2.0... [131releng-armv7-default-job-03] | `-- Extracting readline-8.2.0: .......... done [131releng-armv7-default-job-03] `-- Extracting python39-3.9.16: .......... done [131releng-armv7-default-job-03] Extracting ninja-1.11.1,2: ........ done ===== Message from python39-3.9.16: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 ===> elastix-5.0.1.20220218_1 depends on executable: ninja - found ===> Returning to build of elastix-5.0.1.20220218_1 ===> elastix-5.0.1.20220218_1 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - not found ===> Installing existing package /packages/All/eigen-3.4.0_1.pkg [131releng-armv7-default-job-03] Installing eigen-3.4.0_1... [131releng-armv7-default-job-03] `-- Installing blas-3.11.0... [131releng-armv7-default-job-03] | `-- Installing gcc12-12.2.0_5... [131releng-armv7-default-job-03] | | `-- Installing binutils-2.39,1... [131releng-armv7-default-job-03] | | `-- Extracting binutils-2.39,1: .......... done [131releng-armv7-default-job-03] | | `-- Installing gmp-6.2.1... [131releng-armv7-default-job-03] | | `-- Extracting gmp-6.2.1: .......... done [131releng-armv7-default-job-03] | | `-- Installing mpc-1.2.1... [131releng-armv7-default-job-03] | | `-- Installing mpfr-4.2.0,1... [131releng-armv7-default-job-03] | | `-- Extracting mpfr-4.2.0,1: .......... done [131releng-armv7-default-job-03] | | `-- Extracting mpc-1.2.1: ......... done [131releng-armv7-default-job-03] | `-- Extracting gcc12-12.2.0_5: .......... done [131releng-armv7-default-job-03] `-- Extracting blas-3.11.0: ........ done [131releng-armv7-default-job-03] `-- Installing lapack-3.11.0... [131releng-armv7-default-job-03] `-- Extracting lapack-3.11.0: .......... done [131releng-armv7-default-job-03] Extracting eigen-3.4.0_1: .......... done ===== Message from gcc12-12.2.0_5: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc12 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> elastix-5.0.1.20220218_1 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - found ===> Returning to build of elastix-5.0.1.20220218_1 =========================================================================== =======================<phase: lib-depends >============================ ===> elastix-5.0.1.20220218_1 depends on shared library: libgdcmCommon.so - not found ===> Installing existing package /packages/All/gdcm-3.0.21.pkg [131releng-armv7-default-job-03] Installing gdcm-3.0.21... [131releng-armv7-default-job-03] `-- Installing openjpeg-2.5.0... [131releng-armv7-default-job-03] | `-- Installing jpeg-turbo-2.1.4... [131releng-armv7-default-job-03] | `-- Extracting jpeg-turbo-2.1.4: .......... done [131releng-armv7-default-job-03] | `-- Installing lcms2-2.13.1... [131releng-armv7-default-job-03] | | `-- Installing tiff-4.4.0_1... [131releng-armv7-default-job-03] | | `-- Installing jbigkit-2.1_1... [131releng-armv7-default-job-03] | | `-- Extracting jbigkit-2.1_1: .......... done [131releng-armv7-default-job-03] | | `-- Installing libdeflate-1.17... [131releng-armv7-default-job-03] | | `-- Extracting libdeflate-1.17: .......... done [131releng-armv7-default-job-03] | | `-- Installing zstd-1.5.2_1... [131releng-armv7-default-job-03] | | | `-- Installing liblz4-1.9.4,1... [131releng-armv7-default-job-03] | | | `-- Extracting liblz4-1.9.4,1: .......... done [131releng-armv7-default-job-03] | | `-- Extracting zstd-1.5.2_1: .......... done [131releng-armv7-default-job-03] | | `-- Extracting tiff-4.4.0_1: .......... done [131releng-armv7-default-job-03] | `-- Extracting lcms2-2.13.1: .......... done [131releng-armv7-default-job-03] | `-- Installing png-1.6.39... [131releng-armv7-default-job-03] | `-- Extracting png-1.6.39: .......... done [131releng-armv7-default-job-03] `-- Extracting openjpeg-2.5.0: .......... done [131releng-armv7-default-job-03] Extracting gdcm-3.0.21: .......... done ===> elastix-5.0.1.20220218_1 depends on shared library: libgdcmCommon.so - found (/usr/local/lib/libgdcmCommon.so) ===> Returning to build of elastix-5.0.1.20220218_1 ===> elastix-5.0.1.20220218_1 depends on shared library: libhdf5.so - not found ===> Installing existing package /packages/All/hdf5-1.12.2_1,1.pkg [131releng-armv7-default-job-03] Installing hdf5-1.12.2_1,1... [131releng-armv7-default-job-03] `-- Installing libaec-1.0.6... [131releng-armv7-default-job-03] `-- Extracting libaec-1.0.6: .......... done [131releng-armv7-default-job-03] Extracting hdf5-1.12.2_1,1: .......... done ===> elastix-5.0.1.20220218_1 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so) ===> Returning to build of elastix-5.0.1.20220218_1 ===> elastix-5.0.1.20220218_1 depends on shared library: libITKCommon-5.2.so - not found ===> Installing existing package /packages/All/InsightToolkit521-5.2.1.pkg [131releng-armv7-default-job-03] Installing InsightToolkit521-5.2.1... [131releng-armv7-default-job-03] `-- Installing fftw-2.1.5_22... [131releng-armv7-default-job-03] `-- Extracting fftw-2.1.5_22: .......... done [131releng-armv7-default-job-03] Extracting InsightToolkit521-5.2.1: .......... done ===== Message from fftw-2.1.5_22: -- ===> NOTICE: The fftw port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> elastix-5.0.1.20220218_1 depends on shared library: libITKCommon-5.2.so - found (/usr/local/lib/libITKCommon-5.2.so) ===> Returning to build of elastix-5.0.1.20220218_1 =========================================================================== =======================<phase: configure >============================ ===> Configuring for elastix-5.0.1.20220218_1 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/graphics/elastix/work/.build -- The C compiler identification is Clang 13.0.0 -- The CXX compiler identification is Clang 13.0.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Error at /wrkdirs/usr/ports/graphics/elastix/work/.build/CMakeFiles/CMakeTmp/CMakeLists.txt:16 (add_executable): No SOURCES given to target: cmTC_8d461 CMake Error at /usr/local/share/cmake/Modules/FindOpenMP.cmake:261 (try_compile): Failed to generate test project build system. Call Stack (most recent call first): /usr/local/share/cmake/Modules/FindOpenMP.cmake:537 (_OPENMP_GET_FLAGS) CMakeLists.txt:124 (find_package) -- Configuring incomplete, errors occurred! See also "/wrkdirs/usr/ports/graphics/elastix/work/.build/CMakeFiles/CMakeOutput.log". *** Error code 1 Stop. make: stopped in /usr/ports/graphics/elastix