[package - main-powerpc64-default][biology/megahit] Failed for megahit-1.2.9_1 in build
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Date: Sun, 05 Feb 2023 05:48:16 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: jwb@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/foul1/data/main-powerpc64-default/p9ed8e38cde84_sc52c98e69/logs/megahit-1.2.9_1.log
Build URL: https://pkg-status.freebsd.org/foul1/build.html?mastername=main-powerpc64-default&build=p9ed8e38cde84_sc52c98e69
Log:
=>> Building biology/megahit
build started at Sun Feb 5 05:47:29 UTC 2023
port directory: /usr/ports/biology/megahit
package name: megahit-1.2.9_1
building for: FreeBSD main-powerpc64-default-job-01 14.0-CURRENT FreeBSD 14.0-CURRENT 1400078 powerpc
maintained by: jwb@FreeBSD.org
Makefile ident:
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Job Id: 01
!!! Jail is newer than host. (Jail: 1400078, Host: 1400073) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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=======================<phase: check-sanity >============================
===> License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> megahit-1.2.9_1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.19.0.pkg
[main-powerpc64-default-job-01] Installing pkg-1.19.0...
[main-powerpc64-default-job-01] Extracting pkg-1.19.0: .......... done
===> megahit-1.2.9_1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of megahit-1.2.9_1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by megahit-1.2.9_1 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by megahit-1.2.9_1 for building
=> SHA256 Checksum OK for voutcn-megahit-v1.2.9_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by megahit-1.2.9_1 for building
===> Extracting for megahit-1.2.9_1
=> SHA256 Checksum OK for voutcn-megahit-v1.2.9_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for megahit-1.2.9_1
===> Applying FreeBSD patches for megahit-1.2.9_1 from /usr/ports/biology/megahit/files
===========================================================================
=======================<phase: build-depends >============================
===> megahit-1.2.9_1 depends on file: /usr/local/bin/cmake - not found
===> Installing existing package /packages/All/cmake-core-3.25.1.pkg
[main-powerpc64-default-job-01] Installing cmake-core-3.25.1...
[main-powerpc64-default-job-01] `-- Installing expat-2.5.0...
<snip>
CMake Warning:
Manually-specified variables were not used by the project:
BOOST_PYTHON_SUFFIX
CMAKE_COLOR_MAKEFILE
CMAKE_C_FLAGS_DEBUG
CMAKE_C_FLAGS_RELEASE
CMAKE_MODULE_LINKER_FLAGS
CMAKE_SHARED_LINKER_FLAGS
FETCHCONTENT_FULLY_DISCONNECTED
Python_ADDITIONAL_VERSIONS
THREADS_HAVE_PTHREAD_ARG
-- Build files have been written to: /wrkdirs/usr/ports/biology/megahit/work/.build
===========================================================================
=======================<phase: build >============================
===> Building for megahit-1.2.9_1
[ 0% 2/110] /usr/bin/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src"' -DNDEBUG -mbmi2 -DUSE_BMI2 -mpopcnt -std=gnu++11 -MD -MT CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o -MF CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp
FAILED: CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o
/usr/bin/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src"' -DNDEBUG -mbmi2 -DUSE_BMI2 -mpopcnt -std=gnu++11 -MD -MT CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o -MF CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp
c++: warning: argument unused during compilation: '-mbmi2' [-Wunused-command-line-argument]
c++: warning: argument unused during compilation: '-mpopcnt' [-Wunused-command-line-argument]
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11:
In file included from /usr/lib/clang/14.0.5/include/x86intrin.h:13:
/usr/lib/clang/14.0.5/include/ia32intrin.h:200:10: error: use of undeclared identifier '__builtin_ia32_readeflags_u32'
return __builtin_ia32_readeflags_u32();
^
/usr/lib/clang/14.0.5/include/ia32intrin.h:206:3: error: use of undeclared identifier '__builtin_ia32_writeeflags_u32'
__builtin_ia32_writeeflags_u32(__f);
^
/usr/lib/clang/14.0.5/include/ia32intrin.h:288:10: error: use of undeclared identifier '__builtin_ia32_crc32qi'
return __builtin_ia32_crc32qi(__C, __D);
^
/usr/lib/clang/14.0.5/include/ia32intrin.h:309:10: error: use of undeclared identifier '__builtin_ia32_crc32hi'
return __builtin_ia32_crc32hi(__C, __D);
^
/usr/lib/clang/14.0.5/include/ia32intrin.h:330:10: error: use of undeclared identifier '__builtin_ia32_crc32si'
return __builtin_ia32_crc32si(__C, __D);
^
/usr/lib/clang/14.0.5/include/ia32intrin.h:358:10: error: use of undeclared identifier '__builtin_ia32_rdpmc'
return __builtin_ia32_rdpmc(__A);
^
/usr/lib/clang/14.0.5/include/ia32intrin.h:364:10: error: use of undeclared identifier '__builtin_ia32_rdtscp'
return __builtin_ia32_rdtscp(__A);
^
/usr/lib/clang/14.0.5/include/ia32intrin.h:373:3: error: use of undeclared identifier '__builtin_ia32_wbinvd'
__builtin_ia32_wbinvd();
^
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11:
In file included from /usr/lib/clang/14.0.5/include/x86intrin.h:15:
/usr/lib/clang/14.0.5/include/immintrin.h:14:2: error: "This header is only meant to be used on x86 and x64 architecture"
#error "This header is only meant to be used on x86 and x64 architecture"
^
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11:
In file included from /usr/lib/clang/14.0.5/include/x86intrin.h:15:
In file included from /usr/lib/clang/14.0.5/include/immintrin.h:17:
In file included from /usr/lib/clang/14.0.5/include/x86gprintrin.h:25:
/usr/lib/clang/14.0.5/include/crc32intrin.h:33:10: error: use of undeclared identifier '__builtin_ia32_crc32qi'
return __builtin_ia32_crc32qi(__C, __D);
^
/usr/lib/clang/14.0.5/include/crc32intrin.h:53:10: error: use of undeclared identifier '__builtin_ia32_crc32hi'
return __builtin_ia32_crc32hi(__C, __D);
^
/usr/lib/clang/14.0.5/include/crc32intrin.h:73:10: error: use of undeclared identifier '__builtin_ia32_crc32si'
return __builtin_ia32_crc32si(__C, __D);
^
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11:
In file included from /usr/lib/clang/14.0.5/include/x86intrin.h:15:
In file included from /usr/lib/clang/14.0.5/include/immintrin.h:21:
/usr/lib/clang/14.0.5/include/ppc_wrappers/mmintrin.h:31:2: error: "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error."
#error \
^
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11:
In file included from /usr/lib/clang/14.0.5/include/x86intrin.h:15:
In file included from /usr/lib/clang/14.0.5/include/immintrin.h:26:
/usr/lib/clang/14.0.5/include/ppc_wrappers/xmmintrin.h:31:2: error: "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error."
#error "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error."
^
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11:
In file included from /usr/lib/clang/14.0.5/include/x86intrin.h:15:
In file included from /usr/lib/clang/14.0.5/include/immintrin.h:26:
In file included from /usr/lib/clang/14.0.5/include/ppc_wrappers/xmmintrin.h:56:
/usr/lib/clang/14.0.5/include/ppc_wrappers/mmintrin.h:31:2: error: "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error."
#error \
^
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11:
In file included from /usr/lib/clang/14.0.5/include/x86intrin.h:15:
In file included from /usr/lib/clang/14.0.5/include/immintrin.h:26:
/usr/lib/clang/14.0.5/include/ppc_wrappers/xmmintrin.h:99:11: error: use of undeclared identifier 'vec_vsx_ld'
return (vec_vsx_ld(0, __P));
^
/usr/lib/clang/14.0.5/include/ppc_wrappers/xmmintrin.h:318:7: error: use of undeclared identifier 'vec_sqrt'; did you mean 'vec_rsqrt'?
c = vec_sqrt (a);
^
/usr/lib/clang/14.0.5/include/altivec.h:8501:34: note: 'vec_rsqrt' declared here
static vector float __ATTRS_o_ai vec_rsqrt(vector float __a) {
^
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11:
In file included from /usr/lib/clang/14.0.5/include/x86intrin.h:15:
In file included from /usr/lib/clang/14.0.5/include/immintrin.h:26:
/usr/lib/clang/14.0.5/include/ppc_wrappers/xmmintrin.h:352:11: error: use of undeclared identifier 'vec_sqrt'; did you mean 'vec_rsqrt'?
return (vec_sqrt ((__v4sf)__A));
^
/usr/lib/clang/14.0.5/include/altivec.h:8501:34: note: 'vec_rsqrt' declared here
static vector float __ATTRS_o_ai vec_rsqrt(vector float __a) {
^
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11:
In file included from /usr/lib/clang/14.0.5/include/x86intrin.h:15:
In file included from /usr/lib/clang/14.0.5/include/immintrin.h:26:
/usr/lib/clang/14.0.5/include/ppc_wrappers/xmmintrin.h:972:21: error: use of 'long long' with '__vector' requires VSX support (available on POWER7 or later) to be enabled
__vector unsigned long long result;
^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
[ 1% 2/110] /usr/bin/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src"' -DNDEBUG -mbmi2 -DUSE_BMI2 -mpopcnt -std=gnu++11 -MD -MT CMakeFiles/megahit_core.dir/src/main.cpp.o -MF CMakeFiles/megahit_core.dir/src/main.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main.cpp
FAILED: CMakeFiles/megahit_core.dir/src/main.cpp.o
/usr/bin/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src"' -DNDEBUG -mbmi2 -DUSE_BMI2 -mpopcnt -std=gnu++11 -MD -MT CMakeFiles/megahit_core.dir/src/main.cpp.o -MF CMakeFiles/megahit_core.dir/src/main.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main.cpp
c++: warning: argument unused during compilation: '-mbmi2' [-Wunused-command-line-argument]
c++: warning: argument unused during compilation: '-mpopcnt' [-Wunused-command-line-argument]
Assertion failed: (IsValid && "Failed to parse output constraint"), function EmitAsmStmt, file /usr/local/poudriere/jails/main-powerpc64/usr/src/contrib/llvm-project/clang/lib/CodeGen/CGStmt.cpp, line 2276.
PLEASE submit a bug report to https://bugs.freebsd.org/submit/ and include the crash backtrace, preprocessed source, and associated run script.
Stack dump:
0. Program arguments: /usr/bin/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__=\"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src\" -DNDEBUG -mbmi2 -DUSE_BMI2 -mpopcnt -std=gnu++11 -MD -MT CMakeFiles/megahit_core.dir/src/main.cpp.o -MF CMakeFiles/megahit_core.dir/src/main.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main.cpp
1. <eof> parser at end of file
2. Per-file LLVM IR generation
3. /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/utils/cpu_dispatch.h:8:13: Generating code for declaration 'HasPopcnt'
#0 0x000000001525ee78 (/usr/bin/c+++0x1525ee78)
#1 0x000000001525c44c (/usr/bin/c+++0x1525c44c)
#2 0x00000000151ed754 (/usr/bin/c+++0x151ed754)
#3 0x00000000151eda28 (/usr/bin/c+++0x151eda28)
#4 0x000000081745a1dc (/lib/libthr.so.3+0x2f1dc)
c++: error: clang frontend command failed with exit code 134 (use -v to see invocation)
FreeBSD clang version 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc12386ae247c)
Target: powerpc64-unknown-freebsd14.0
Thread model: posix
InstalledDir: /usr/bin
c++: note: diagnostic msg:
********************
PLEASE ATTACH THE FOLLOWING FILES TO THE BUG REPORT:
Preprocessed source(s) and associated run script(s) are located at:
c++: note: diagnostic msg: /tmp/main-ade6b2.cpp
c++: note: diagnostic msg: /tmp/main-ade6b2.sh
c++: note: diagnostic msg:
********************
ninja: build stopped: subcommand failed.
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/megahit