[package - main-powerpc64-default][science/ocean] Failed for ocean-spectroscopy-code-3.0.0 in build
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Date: Sat, 04 Feb 2023 09:30:54 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/foul1/data/main-powerpc64-default/p9ed8e38cde84_sc52c98e69/logs/ocean-spectroscopy-code-3.0.0.log
Build URL: https://pkg-status.freebsd.org/foul1/build.html?mastername=main-powerpc64-default&build=p9ed8e38cde84_sc52c98e69
Log:
=>> Building science/ocean
build started at Sat Feb 4 09:29:59 UTC 2023
port directory: /usr/ports/science/ocean
package name: ocean-spectroscopy-code-3.0.0
building for: FreeBSD main-powerpc64-default-job-03 14.0-CURRENT FreeBSD 14.0-CURRENT 1400078 powerpc
maintained by: yuri@FreeBSD.org
Makefile ident:
Poudriere version: 3.2.8-23-ga7f8d188
Host OSVERSION: 1400073
Jail OSVERSION: 1400078
Job Id: 03
!!! Jail is newer than host. (Jail: 1400078, Host: 1400073) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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---Begin OPTIONS List---
===> The following configuration options are available for ocean-spectroscopy-code-3.0.0:
====> MPI (Message Passing Interface) support: you have to select exactly one of them
MPICH=off: Parallel processing support via MPICH 3
OPENMPI=on: Parallel processing support via Open MPI
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
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--End PLIST_SUB--
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kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===> License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> ocean-spectroscopy-code-3.0.0 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.19.0.pkg
[main-powerpc64-default-job-03] Installing pkg-1.19.0...
[main-powerpc64-default-job-03] Extracting pkg-1.19.0: .......... done
===> ocean-spectroscopy-code-3.0.0 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of ocean-spectroscopy-code-3.0.0
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by ocean-spectroscopy-code-3.0.0 for building
===========================================================================
=======================<phase: checksum >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by ocean-spectroscopy-code-3.0.0 for building
=> SHA256 Checksum OK for times-software-OCEAN-v3.0.0_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by ocean-spectroscopy-code-3.0.0 for building
===> Extracting for ocean-spectroscopy-code-3.0.0
=> SHA256 Checksum OK for times-software-OCEAN-v3.0.0_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for ocean-spectroscopy-code-3.0.0
===> Applying FreeBSD patches for ocean-spectroscopy-code-3.0.0 from /usr/ports/science/ocean/files
===========================================================================
<snip>
[main-powerpc64-default-job-03] Extracting openblas-0.3.20,1: .......... done
===> ocean-spectroscopy-code-3.0.0 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so)
===> Returning to build of ocean-spectroscopy-code-3.0.0
===> ocean-spectroscopy-code-3.0.0 depends on shared library: libmpi_cxx.so - not found
===> Installing existing package /packages/All/openmpi-4.1.4.pkg
[main-powerpc64-default-job-03] Installing openmpi-4.1.4...
[main-powerpc64-default-job-03] `-- Installing hwloc2-2.8.0...
[main-powerpc64-default-job-03] | `-- Installing level-zero-1.9.4...
[main-powerpc64-default-job-03] | `-- Extracting level-zero-1.9.4: .......... done
[main-powerpc64-default-job-03] | `-- Installing libpciaccess-0.16...
[main-powerpc64-default-job-03] | | `-- Installing pciids-20221028...
[main-powerpc64-default-job-03] | | `-- Extracting pciids-20221028: ..... done
[main-powerpc64-default-job-03] | `-- Extracting libpciaccess-0.16: ......... done
[main-powerpc64-default-job-03] | `-- Installing libxml2-2.10.3_1...
[main-powerpc64-default-job-03] | | `-- Installing readline-8.2.0...
[main-powerpc64-default-job-03] | | `-- Extracting readline-8.2.0: .......... done
[main-powerpc64-default-job-03] | `-- Extracting libxml2-2.10.3_1: .......... done
[main-powerpc64-default-job-03] `-- Extracting hwloc2-2.8.0: .......... done
[main-powerpc64-default-job-03] `-- Installing libevent-2.1.12...
[main-powerpc64-default-job-03] `-- Extracting libevent-2.1.12: .......... done
[main-powerpc64-default-job-03] `-- Installing libltdl-2.4.7...
[main-powerpc64-default-job-03] `-- Extracting libltdl-2.4.7: .......... done
[main-powerpc64-default-job-03] `-- Installing munge-0.5.14_1...
[main-powerpc64-default-job-03] | `-- Installing perl5-5.32.1_3...
[main-powerpc64-default-job-03] | `-- Extracting perl5-5.32.1_3: .......... done
[main-powerpc64-default-job-03] `-- Extracting munge-0.5.14_1: ......... done
[main-powerpc64-default-job-03] `-- Installing slurm-wlm-20.02.7_2...
[main-powerpc64-default-job-03] | `-- Installing hdf5-1.12.2_1,1...
[main-powerpc64-default-job-03] | | `-- Installing libaec-1.0.6...
[main-powerpc64-default-job-03] | | `-- Extracting libaec-1.0.6: .......... done
[main-powerpc64-default-job-03] | `-- Extracting hdf5-1.12.2_1,1: .......... done
[main-powerpc64-default-job-03] | `-- Installing json-c-0.16...
[main-powerpc64-default-job-03] | `-- Extracting json-c-0.16: .......... done
[main-powerpc64-default-job-03] | `-- Installing liblz4-1.9.4,1...
[main-powerpc64-default-job-03] | `-- Extracting liblz4-1.9.4,1: .......... done
[main-powerpc64-default-job-03] | `-- Installing libsysinfo-0.0.3_2...
[main-powerpc64-default-job-03] | `-- Extracting libsysinfo-0.0.3_2: ......... done
[main-powerpc64-default-job-03] | `-- Installing lua54-5.4.4...
[main-powerpc64-default-job-03] | | `-- Installing libedit-3.1.20221030,1...
[main-powerpc64-default-job-03] | | `-- Extracting libedit-3.1.20221030,1: .......... done
[main-powerpc64-default-job-03] | `-- Extracting lua54-5.4.4: .......... done
===> Creating groups.
Creating group 'slurm' with gid '468'.
===> Creating users
Creating user 'slurm' with uid '468'.
[main-powerpc64-default-job-03] `-- Extracting slurm-wlm-20.02.7_2: .......... done
[main-powerpc64-default-job-03] Extracting openmpi-4.1.4: .......... done
=====
Message from slurm-wlm-20.02.7_2:
--
===> NOTICE:
The slurm-wlm port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
=====
Message from openmpi-4.1.4:
--
===> NOTICE:
The openmpi port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===> ocean-spectroscopy-code-3.0.0 depends on shared library: libmpi_cxx.so - found (/usr/local/mpi/openmpi/lib/libmpi_cxx.so)
===> Returning to build of ocean-spectroscopy-code-3.0.0
===========================================================================
=======================<phase: configure >============================
===> Configuring for ocean-spectroscopy-code-3.0.0
===========================================================================
=======================<phase: build >============================
===> Building for ocean-spectroscopy-code-3.0.0
gmake[1]: Entering directory '/wrkdirs/usr/ports/science/ocean/work/OCEAN-3.0.0'
perl append_git.pl
cd Common; make
make[2]: Entering directory '/wrkdirs/usr/ports/science/ocean/work/OCEAN-3.0.0/Common'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/wrkdirs/usr/ports/science/ocean/work/OCEAN-3.0.0/Common'
cd zbridge; make
make[2]: Entering directory '/wrkdirs/usr/ports/science/ocean/work/OCEAN-3.0.0/zbridge'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
gfortran12 -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc12 -cpp -DBLAS -DMPI -D__OLD_MPI -fallow-argument-mismatch -ffree-line-length-512 -D__FFTW3 -c zf90/setup2.f90 -o zobj/setup2.o
gfortran12 -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc12 -cpp -DBLAS -DMPI -D__OLD_MPI -fallow-argument-mismatch -ffree-line-length-512 -D__FFTW3 -c zf90/enkread.f90 -o zobj/enkread.o
gfortran12 -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc12 -cpp -DBLAS -DMPI -D__OLD_MPI -fallow-argument-mismatch -ffree-line-length-512 -D__FFTW3 -c zf90/lxb_getval.f90 -o zobj/lxb_getval.o
gfortran12 -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc12 -cpp -DBLAS -DMPI -D__OLD_MPI -fallow-argument-mismatch -ffree-line-length-512 -D__FFTW3 -c zf90/melread.f90 -o zobj/melread.o
gfortran12 -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc12 -cpp -DBLAS -DMPI -D__OLD_MPI -fallow-argument-mismatch -ffree-line-length-512 -D__FFTW3 -c zf90/cross.f90 -o zobj/cross.o
gfortran12 -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc12 -cpp -DBLAS -DMPI -D__OLD_MPI -fallow-argument-mismatch -ffree-line-length-512 -D__FFTW3 -c zf90/getrecvec.f90 -o zobj/getrecvec.o
gfortran12 -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc12 -cpp -DBLAS -DMPI -D__OLD_MPI -fallow-argument-mismatch -ffree-line-length-512 -D__FFTW3 -o zexe/setup2.x zobj/setup2.o zobj/enkread.o zobj/lxb_getval.o zobj/melread.o zobj/cross.o zobj/getrecvec.o
gfortran12 -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc12 -cpp -DBLAS -DMPI -D__OLD_MPI -fallow-argument-mismatch -ffree-line-length-512 -D__FFTW3 -c zf90/orthog.f90 -o zobj/orthog.o
gfortran12 -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc12 -cpp -DBLAS -DMPI -D__OLD_MPI -fallow-argument-mismatch -ffree-line-length-512 -D__FFTW3 -c zf90/normalize.f90 -o zobj/normalize.o
gfortran12 -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc12 -cpp -DBLAS -DMPI -D__OLD_MPI -fallow-argument-mismatch -ffree-line-length-512 -D__FFTW3 -c zf90/dptest.f90 -o zobj/dptest.o
gfortran12 -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc12 -cpp -DBLAS -DMPI -D__OLD_MPI -fallow-argument-mismatch -ffree-line-length-512 -D__FFTW3 -o zexe/orthog.x zobj/orthog.o zobj/normalize.o zobj/lxb_getval.o zobj/dptest.o
gfortran12 -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc12 -cpp -DBLAS -DMPI -D__OLD_MPI -fallow-argument-mismatch -ffree-line-length-512 -D__FFTW3 -c -cpp zf90/FFT_wrapper.f90 -I/usr/local/include/ -o zobj/FFT_wrapper.o
gfortran12 -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc12 -cpp -DBLAS -DMPI -D__OLD_MPI -fallow-argument-mismatch -ffree-line-length-512 -D__FFTW3 -c zf90/conugtoux.f90 -o zobj/conugtoux.o
gfortran12 -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc12 -cpp -DBLAS -DMPI -D__OLD_MPI -fallow-argument-mismatch -ffree-line-length-512 -D__FFTW3 -c zf90/chkfftreal.f90 -o zobj/chkfftreal.o
gfortran12 -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc12 -cpp -DBLAS -DMPI -D__OLD_MPI -fallow-argument-mismatch -ffree-line-length-512 -D__FFTW3 -c zf90/chkfftrecp.f90 -o zobj/chkfftrecp.o
gfortran12 -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc12 -cpp -DBLAS -DMPI -D__OLD_MPI -fallow-argument-mismatch -ffree-line-length-512 -D__FFTW3 -c zstd/jlmfft.f -o zobj/jlmfft.o
zstd/jlmfft.f:54:72:
54 | do 40 j=1,n2
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 40 at (1)
zstd/jlmfft.f:55:72:
55 | do 40 i=1,n1
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 40 at (1)
zstd/jlmfft.f:901:12:
898 | do 10 i=1,l,2
| 2
.....
901 | trigs(i+1)=dsin(angle)
| 1
Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2)
zstd/jlmfft.f:454:37:
454 | call vpassm(ar,ai,work(1),work(2),trigs,
| 1
Warning: Array reference at (1) is out of bounds (2 > 1) in dimension 1
zstd/jlmfft.f:459:31:
459 | call vpassm(work(1),work(2),ar,ai,trigs,
| 1
Warning: Array reference at (1) is out of bounds (2 > 1) in dimension 1
gfortran12 -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc12 -cpp -DBLAS -DMPI -D__OLD_MPI -fallow-argument-mismatch -ffree-line-length-512 -D__FFTW3 -c zf90/facpowfind.f90 -o zobj/facpowfind.o
gfortran12 -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc12 -cpp -DBLAS -DMPI -D__OLD_MPI -fallow-argument-mismatch -ffree-line-length-512 -D__FFTW3 -c zf90/gentoreal.f90 -o zobj/gentoreal.o
gfortran12 -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc12 -cpp -DBLAS -DMPI -D__OLD_MPI -fallow-argument-mismatch -ffree-line-length-512 -D__FFTW3 -c zf90/optim.f90 -o zobj/optim.o
gfortran12 -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc12 -cpp -DBLAS -DMPI -D__OLD_MPI -fallow-argument-mismatch -ffree-line-length-512 -D__FFTW3 -c zf90/formx.f90 -o zobj/formx.o
gfortran12 -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc12 -cpp -DBLAS -DMPI -D__OLD_MPI -fallow-argument-mismatch -ffree-line-length-512 -D__FFTW3 -o zexe/conugtoux.x zobj/conugtoux.o zobj/chkfftreal.o zobj/chkfftrecp.o zobj/jlmfft.o zobj/facpowfind.o zobj/gentoreal.o zobj/lxb_getval.o zobj/optim.o zobj/formx.o zobj/FFT_wrapper.o -I/usr/local/include/ -L/usr/local/lib/ -lfftw3
gfortran12 -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc12 -cpp -DBLAS -DMPI -D__OLD_MPI -fallow-argument-mismatch -ffree-line-length-512 -D__FFTW3 -c zf90/shifted_conugtoux.f90 -o zobj/shifted_conugtoux.o
gfortran12 -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc12 -cpp -DBLAS -DMPI -D__OLD_MPI -fallow-argument-mismatch -ffree-line-length-512 -D__FFTW3 -o zexe/shifted_conugtoux.x zobj/shifted_conugtoux.o zobj/chkfftreal.o zobj/chkfftrecp.o zobj/jlmfft.o zobj/facpowfind.o zobj/gentoreal.o zobj/lxb_getval.o zobj/optim.o zobj/formx.o zobj/FFT_wrapper.o -I/usr/local/include/ -L/usr/local/lib/ -lfftw3
gfortran12 -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc12 -cpp -DBLAS -DMPI -D__OLD_MPI -fallow-argument-mismatch -ffree-line-length-512 -D__FFTW3 -o zexe/jdftx_density.x zf90/jdftx_density.f90
gfortran12 -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc12 -cpp -DBLAS -DMPI -D__OLD_MPI -fallow-argument-mismatch -ffree-line-length-512 -D__FFTW3 -o zexe/jdftx_energy.x zf90/jdftx_energy.f90
make[2]: Leaving directory '/wrkdirs/usr/ports/science/ocean/work/OCEAN-3.0.0/zbridge'
cd Modules; make
make[2]: Entering directory '/wrkdirs/usr/ports/science/ocean/work/OCEAN-3.0.0/Modules'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
/usr/local/mpi/openmpi/bin/mpif90 -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc12 -cpp -DBLAS -DMPI -D__OLD_MPI -fallow-argument-mismatch -ffree-line-length-512 -D__FFTW3 -c -o FFT_wrapper.o FFT_wrapper.f90 -I/usr/local/include/
touch FFT_wrapper.mod
/usr/local/mpi/openmpi/bin/mpif90 -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc12 -cpp -DBLAS -DMPI -D__OLD_MPI -fallow-argument-mismatch -ffree-line-length-512 -D__FFTW3 -c -o ai_kinds.o ai_kinds.f90 -I/usr/local/include/
touch ai_kinds.mod
/usr/local/mpi/openmpi/bin/mpif90 -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc12 -cpp -DBLAS -DMPI -D__OLD_MPI -fallow-argument-mismatch -ffree-line-length-512 -D__FFTW3 -c -o ocean_mpi.o ocean_mpi.f90 -I/usr/local/include/
touch ocean_mpi.mod
/usr/local/mpi/openmpi/bin/mpif90 -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc12 -cpp -DBLAS -DMPI -D__OLD_MPI -fallow-argument-mismatch -ffree-line-length-512 -D__FFTW3 -c -o screen_timekeeper.o screen_timekeeper.f90 -I/usr/local/include/
touch screen_timekeeper.mod
/usr/local/mpi/openmpi/bin/mpif90 -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc12 -cpp -DBLAS -DMPI -D__OLD_MPI -fallow-argument-mismatch -ffree-line-length-512 -D__FFTW3 -c -o ocean_abi_files.o ocean_abi_files.f90 -I/usr/local/include/
ocean_abi_files.f90:1196:22:
1184 | call MPI_BCAST( ex, 1, MPI_LOGICAL, root, comm, ierr )
| 2
.....
1196 | call MPI_BCAST( npool, 1, MPI_INTEGER, root, comm, ierr )
| 1
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(4)/LOGICAL(4)).
ocean_abi_files.f90:621:45:
605 | call MPI_FILE_READ_AT( WFK_FH, offset, valGvecs, 3*valNGvecs, MPI_INTEGER, MPI_STATUS_IGNORE, ierr )
| 2
.....
621 | call MPI_FILE_READ_AT( WFK_FH, offset, valUofG(:,ib), valNGvecs, MPI_DOUBLE_COMPLEX, &
| 1
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (COMPLEX(8)/INTEGER(4)).
touch ocean_abi_files.mod
/usr/local/mpi/openmpi/bin/mpif90 -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc12 -cpp -DBLAS -DMPI -D__OLD_MPI -fallow-argument-mismatch -ffree-line-length-512 -D__FFTW3 -c -o ocean_constants.o ocean_constants.f90 -I/usr/local/include/
ocean_constants.f90:29:10:
29 | real(QP), parameter :: PI_QP = 3.1415926535897932384626433832795028841971693993751_QP
| 1
Error: Kind -3 not supported for type REAL at (1)
ocean_constants.f90:30:10:
30 | real(QP), parameter :: invSqrt4PI_QP = 0.282094791773878143474039725780386293_QP
| 1
Error: Kind -3 not supported for type REAL at (1)
make[2]: *** [makefile:10: ocean_constants.o] Error 1
make[2]: Leaving directory '/wrkdirs/usr/ports/science/ocean/work/OCEAN-3.0.0/Modules'
gmake[1]: *** [Makefile:15: all] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/ocean/work/OCEAN-3.0.0'
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/science/ocean