[exp - 123amd64-default-build-as-user][science/agrum] Failed for agrum-1.5.2 in build
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Date: Fri, 03 Feb 2023 06:21:45 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/package19/data/123amd64-default-build-as-user/fd2d491bf094/logs/agrum-1.5.2.log
Build URL: https://pkg-status.freebsd.org/package19/build.html?mastername=123amd64-default-build-as-user&build=fd2d491bf094
Log:
=>> Building science/agrum
build started at Fri Feb 3 06:03:56 UTC 2023
port directory: /usr/ports/science/agrum
package name: agrum-1.5.2
building for: FreeBSD 123amd64-default-build-as-user-job-13 12.3-RELEASE-p10 FreeBSD 12.3-RELEASE-p10 amd64
maintained by: yuri@FreeBSD.org
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ODBC=off: ODBC database backend
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===> Use 'make config' to modify these settings
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=======================<phase: check-sanity >============================
===> License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> agrum-1.5.2 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.19.0.pkg
[123amd64-default-build-as-user-job-13] Installing pkg-1.19.0...
[123amd64-default-build-as-user-job-13] Extracting pkg-1.19.0: .......... done
===> agrum-1.5.2 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of agrum-1.5.2
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by agrum-1.5.2 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by agrum-1.5.2 for building
=> SHA256 Checksum OK for agrumery-aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1_GL0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by agrum-1.5.2 for building
===> Extracting for agrum-1.5.2
=> SHA256 Checksum OK for agrumery-aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1_GL0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for agrum-1.5.2
===========================================================================
=======================<phase: build-depends >============================
===> agrum-1.5.2 depends on file: /usr/local/bin/cmake - not found
===> Installing existing package /packages/All/cmake-core-3.25.1.pkg
[123amd64-default-build-as-user-job-13] Installing cmake-core-3.25.1...
[123amd64-default-build-as-user-job-13] `-- Installing expat-2.5.0...
[123amd64-default-build-as-user-job-13] `-- Extracting expat-2.5.0: .......... done
[123amd64-default-build-as-user-job-13] `-- Installing jsoncpp-1.9.5...
[123amd64-default-build-as-user-job-13] `-- Extracting jsoncpp-1.9.5: .......... done
[123amd64-default-build-as-user-job-13] `-- Installing libuv-1.44.2...
[123amd64-default-build-as-user-job-13] `-- Extracting libuv-1.44.2: .......... done
[123amd64-default-build-as-user-job-13] `-- Installing rhash-1.4.3...
[123amd64-default-build-as-user-job-13] | `-- Installing gettext-runtime-0.21.1...
[123amd64-default-build-as-user-job-13] | | `-- Installing indexinfo-0.3.1...
[123amd64-default-build-as-user-job-13] | | `-- Extracting indexinfo-0.3.1: .... done
[123amd64-default-build-as-user-job-13] | `-- Extracting gettext-runtime-0.21.1: .......... done
[123amd64-default-build-as-user-job-13] `-- Extracting rhash-1.4.3: .......... done
[123amd64-default-build-as-user-job-13] Extracting cmake-core-3.25.1: .......... done
<snip>
[ 41% 208/503] /usr/bin/c++ -Dagrum_EXPORTS -I/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src -I/wrkdirs/usr/ports/science/agrum/work/.build -I/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/testunits/cxxtest-3.10-1 -I/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/testunits/gumtest -I/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/testunits/cxxtest -I/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/testunits -fopenmp=libomp -DGUM_FOR_SWIG -Wall -pedantic -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -pthread -DGUM_THREADS_USE_STL=1 -DGUM_THREADS=threadsSTL -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -std=gnu++2a -MD -MT src/CMakeFiles/agrum.dir/agrum/tools/multidim/utils/patterns/completeProjectionPattern4MultiDimArray.cpp.o -M
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[ 41% 209/503] /usr/bin/c++ -Dagrum_EXPORTS -I/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src -I/wrkdirs/usr/ports/science/agrum/work/.build -I/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/testunits/cxxtest-3.10-1 -I/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/testunits/gumtest -I/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/testunits/cxxtest -I/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/testunits -fopenmp=libomp -DGUM_FOR_SWIG -Wall -pedantic -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -pthread -DGUM_THREADS_USE_STL=1 -DGUM_THREADS=threadsSTL -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -std=gnu++2a -MD -MT src/CMakeFiles/agrum.dir/agrum/tools/multidim/utils/patterns/completeProjectionPattern4MultiDimImplementation
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FAILED: src/CMakeFiles/agrum.dir/agrum/BN/learning/BNLearnUtils/IBNLearner.cpp.o
/usr/bin/c++ -Dagrum_EXPORTS -I/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src -I/wrkdirs/usr/ports/science/agrum/work/.build -I/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/testunits/cxxtest-3.10-1 -I/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/testunits/gumtest -I/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/testunits/cxxtest -I/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/testunits -fopenmp=libomp -DGUM_FOR_SWIG -Wall -pedantic -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -pthread -DGUM_THREADS_USE_STL=1 -DGUM_THREADS=threadsSTL -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -std=gnu++2a -MD -MT src/CMakeFiles/agrum.dir/agrum/BN/learning/BNLearnUtils/IBNLearner.cpp.o -MF src/CMakeFiles/agrum.dir/agrum/BN/learning/BNLe
arnUtils/IBNLearner.cpp.o.d -o src/CMakeFiles/agrum.dir/agrum/BN/learning/BNLearnUtils/IBNLearner.cpp.o -c /wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/agrum/BN/learning/BNLearnUtils/IBNLearner.cpp
In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/agrum/BN/learning/BNLearnUtils/IBNLearner.cpp:36:
In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/agrum/BN/learning/BNLearnUtils/IBNLearner.h:1238:
/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/agrum/BN/learning/BNLearnUtils/IBNLearner_inl.h:434:13: error: expected unqualified-id
using enum gum::learning::IBNLearner::BNLearnerPriorType;
^
/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/agrum/BN/learning/BNLearnUtils/IBNLearner_inl.h:435:12: error: use of undeclared identifier 'NO_prior'
case NO_prior: return PriorType::NoPriorType;
^
/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/agrum/BN/learning/BNLearnUtils/IBNLearner_inl.h:436:12: error: use of undeclared identifier 'SMOOTHING'
case SMOOTHING: return PriorType::SmoothingPriorType;
^
/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/agrum/BN/learning/BNLearnUtils/IBNLearner_inl.h:437:12: error: use of undeclared identifier 'DIRICHLET_FROM_DATABASE'
case DIRICHLET_FROM_DATABASE:
^
/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/agrum/BN/learning/BNLearnUtils/IBNLearner_inl.h:438:12: error: use of undeclared identifier 'DIRICHLET_FROM_BAYESNET'
case DIRICHLET_FROM_BAYESNET: return PriorType::DirichletPriorType;
^
/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/agrum/BN/learning/BNLearnUtils/IBNLearner_inl.h:439:12: error: use of undeclared identifier 'BDEU'
case BDEU: return PriorType::BDeuPriorType;
^
/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/agrum/BN/learning/BNLearnUtils/IBNLearner.cpp:602:13: error: expected unqualified-id
using enum CorrectedMutualInformation::KModeTypes;
^
/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/agrum/BN/learning/BNLearnUtils/IBNLearner.cpp:603:12: error: use of undeclared identifier 'MDL'
case MDL: mutualInfo_->useMDL(); break;
^
/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/agrum/BN/learning/BNLearnUtils/IBNLearner.cpp:604:12: error: use of undeclared identifier 'NML'
case NML: mutualInfo_->useNML(); break;
^
/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/agrum/BN/learning/BNLearnUtils/IBNLearner.cpp:605:12: error: use of undeclared identifier 'NoCorr'
case NoCorr: mutualInfo_->useNoCorr(); break;
^
/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/agrum/BN/learning/BNLearnUtils/IBNLearner.cpp:768:13: error: expected unqualified-id
using enum gum::learning::IBNLearner::ScoreType;
^
/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/agrum/BN/learning/BNLearnUtils/IBNLearner.cpp:769:12: error: use of undeclared identifier 'AIC'
case AIC: return ScoreAIC::isPriorCompatible(prior, priorWeight_);
^
/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/agrum/BN/learning/BNLearnUtils/IBNLearner.cpp:771:12: error: use of undeclared identifier 'BD'
case BD: return ScoreBD::isPriorCompatible(prior, priorWeight_);
^
/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/agrum/BN/learning/BNLearnUtils/IBNLearner.cpp:773:12: error: use of undeclared identifier 'BDeu'
case BDeu: return ScoreBDeu::isPriorCompatible(prior, priorWeight_);
^
/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/agrum/BN/learning/BNLearnUtils/IBNLearner.cpp:775:12: error: use of undeclared identifier 'BIC'
case BIC: return ScoreBIC::isPriorCompatible(prior, priorWeight_);
^
/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/agrum/BN/learning/BNLearnUtils/IBNLearner.cpp:777:12: error: 'K2' does not refer to a value
case K2: return ScoreK2::isPriorCompatible(prior, priorWeight_);
^
/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/agrum/BN/learning/K2.h:46:11: note: declared here
class K2: private GreedyHillClimbing {
^
/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/agrum/BN/learning/BNLearnUtils/IBNLearner.cpp:779:12: error: use of undeclared identifier 'LOG2LIKELIHOOD'
case LOG2LIKELIHOOD: return ScoreLog2Likelihood::isPriorCompatible(prior, priorWeight_);
^
/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/agrum/BN/learning/BNLearnUtils/IBNLearner.cpp:901:13: error: expected unqualified-id
using enum gum::learning::CorrectedMutualInformation::KModeTypes;
^
/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/agrum/BN/learning/BNLearnUtils/IBNLearner.cpp:902:12: error: use of undeclared identifier 'MDL'
case MDL: cmi.useMDL(); break;
^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
[ 61% 309/503] /usr/bin/c++ -Dagrum_EXPORTS -I/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src -I/wrkdirs/usr/ports/science/agrum/work/.build -I/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/testunits/cxxtest-3.10-1 -I/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/testunits/gumtest -I/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/testunits/cxxtest -I/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/testunits -fopenmp=libomp -DGUM_FOR_SWIG -Wall -pedantic -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -pthread -DGUM_THREADS_USE_STL=1 -DGUM_THREADS=threadsSTL -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -std=gnu++2a -MD -MT src/CMakeFiles/agrum.dir/agrum/BN/learning/BNLearnUtils/BNLearnerListener.cpp.o -MF src/CMakeFiles/agrum.dir/
agrum/BN/learning/BNLearnUtils/BNLearnerListener.cpp.o.d -o src/CMakeFiles/agrum.dir/agrum/BN/learning/BNLearnUtils/BNLearnerListener.cpp.o -c /wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/agrum/BN/learning/BNLearnUtils/BNLearnerListener.cpp
FAILED: src/CMakeFiles/agrum.dir/agrum/BN/learning/BNLearnUtils/BNLearnerListener.cpp.o
/usr/bin/c++ -Dagrum_EXPORTS -I/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src -I/wrkdirs/usr/ports/science/agrum/work/.build -I/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/testunits/cxxtest-3.10-1 -I/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/testunits/gumtest -I/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/testunits/cxxtest -I/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/testunits -fopenmp=libomp -DGUM_FOR_SWIG -Wall -pedantic -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -pthread -DGUM_THREADS_USE_STL=1 -DGUM_THREADS=threadsSTL -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -std=gnu++2a -MD -MT src/CMakeFiles/agrum.dir/agrum/BN/learning/BNLearnUtils/BNLearnerListener.cpp.o -MF src/CMakeFiles/agrum.dir/agrum/BN/learni
ng/BNLearnUtils/BNLearnerListener.cpp.o.d -o src/CMakeFiles/agrum.dir/agrum/BN/learning/BNLearnUtils/BNLearnerListener.cpp.o -c /wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/agrum/BN/learning/BNLearnUtils/BNLearnerListener.cpp
In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/agrum/BN/learning/BNLearnUtils/BNLearnerListener.cpp:41:
In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/agrum/BN/learning/BNLearnUtils/IBNLearner.h:1238:
/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/agrum/BN/learning/BNLearnUtils/IBNLearner_inl.h:434:13: error: expected unqualified-id
using enum gum::learning::IBNLearner::BNLearnerPriorType;
^
/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/agrum/BN/learning/BNLearnUtils/IBNLearner_inl.h:435:12: error: use of undeclared identifier 'NO_prior'
case NO_prior: return PriorType::NoPriorType;
^
/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/agrum/BN/learning/BNLearnUtils/IBNLearner_inl.h:436:12: error: use of undeclared identifier 'SMOOTHING'
case SMOOTHING: return PriorType::SmoothingPriorType;
^
/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/agrum/BN/learning/BNLearnUtils/IBNLearner_inl.h:437:12: error: use of undeclared identifier 'DIRICHLET_FROM_DATABASE'
case DIRICHLET_FROM_DATABASE:
^
/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/agrum/BN/learning/BNLearnUtils/IBNLearner_inl.h:438:12: error: use of undeclared identifier 'DIRICHLET_FROM_BAYESNET'
case DIRICHLET_FROM_BAYESNET: return PriorType::DirichletPriorType;
^
/wrkdirs/usr/ports/science/agrum/work/aGrUM-9534f1a9e4855c9ec31883cb9b3acc88113a13e1/src/agrum/BN/learning/BNLearnUtils/IBNLearner_inl.h:439:12: error: use of undeclared identifier 'BDEU'
case BDEU: return PriorType::BDeuPriorType;
^
6 errors generated.
ninja: build stopped: subcommand failed.
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/science/agrum