From nobody Tue Dec 26 18:58:06 2023 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4T03v30DNGz55LK4 for ; Tue, 26 Dec 2023 18:58:07 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4T03v25bFDz3JdT for ; Tue, 26 Dec 2023 18:58:06 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1703617086; a=rsa-sha256; cv=none; b=gLH3EVkrQxg/xQcrYq256sqKFrCRB1J2+3r5byYe9IXylDQzbEE+dXkc8g8MFR8l3xk7CR 5QdcmWLuXZ98XIlte/kuPB1eINitmB3eFrTON2qVk8eAhh0epwuSXCJHVodoVWJRP48B0X KoRKp7cLMo/s33tyAlV7ySOreLoH0Xxmzt68h0FlN7EDpLGaXxIvMOvTt8rXAqV/EeT06L ssyLdIfMr9tFBuzCPdKQ9KuQsGJAfG4s9J7QB76jPWaGHeW54bM7tNwzWs1lryzNFaQbyH OKZTBQkmNKkFYahhN+HgODDcN2/NQyDjxqVqnhMWEWcDOkEbtBkXau5+nLq84Q== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1703617086; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc; bh=r0UVd7YtPhY7/OMCsHGiTI3akRLpBObZ6dZj3a0KEDE=; b=SV+6xhV9njAO0k/wMx11K51WdWP1vPogm7ZibijO7K1kOsaYyVKKeIZh9DmV9yodM1LvkA tu3j7vRQ0SCKMG/7M/Ax3HFPLiX65QXjNU0/i03iFRUclYVOHzTQCrj1tBOrqIUyZsh88o IwkOcjgkTpX/ccduGzsfskPjBzFBw7bm9NKStiGTWBYP2RVaGZK9gKFjYqMyY9erBMpX34 1L2OW0y8FKQeWN1IdsKmfARQk7OSAM6QfOaqlwuBtfG6/6KSiEa+0iTYZmsgWGdNGrunyj Ker/ljBQvBCDZQQrzeD9S4coo5eh0zH5gCF+QCckI9n1Tp9CB9ycN9DIkkc59A== Received: from foul2.nyi.freebsd.org (foul2.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:27]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4T03v24dbhz1654 for ; Tue, 26 Dec 2023 18:58:06 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from foul2.nyi.freebsd.org (localhost [127.0.0.1]) by foul2.nyi.freebsd.org (8.17.1/8.17.1) with ESMTP id 3BQIw6DQ084771 for ; Tue, 26 Dec 2023 18:58:06 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by foul2.nyi.freebsd.org (8.17.1/8.17.1/Submit) id 3BQIw6v9084755; Tue, 26 Dec 2023 18:58:06 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Tue, 26 Dec 2023 18:58:06 GMT From: pkg-fallout@FreeBSD.org Message-Id: <202312261858.3BQIw6v9084755@foul2.nyi.freebsd.org> To: pkg-fallout@FreeBSD.org Subject: [package - 140releng-powerpc64le-quarterly][biology/megahit] Failed for megahit-1.2.9_1 in build List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jwb@FreeBSD.org Log URL: https://pkg-status.freebsd.org/foul2/data/140releng-powerpc64le-quarterly/74b68b434d29/logs/megahit-1.2.9_1.log Build URL: https://pkg-status.freebsd.org/foul2/build.html?mastername=140releng-powerpc64le-quarterly&build=74b68b434d29 Log: =>> Building biology/megahit build started at Tue Dec 26 18:54:24 UTC 2023 port directory: /usr/ports/biology/megahit package name: megahit-1.2.9_1 building for: FreeBSD 140releng-powerpc64le-quarterly-job-17 14.0-RC3 FreeBSD 14.0-RC3 1400097 powerpc maintained by: jwb@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 536 Oct 3 01:04 /usr/ports/biology/megahit/Makefile Ports top last git commit: 74b68b434 Ports top unclean checkout: no Port dir last git commit: 2195304f9 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.0 Host OSVERSION: 1500000 Jail OSVERSION: 1400097 Job Id: 17 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1400097 UNAME_v=FreeBSD 14.0-RC3 1400097 UNAME_r=14.0-RC3 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.0 MASTERMNT=/usr/local/poudriere/data/.m/140releng-powerpc64le-quarterly/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/140releng-powerpc64le-quarterly/17/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=140releng-powerpc64le-quarterly SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/140releng-powerpc64le-quarterly/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.0 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/megahit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/megahit/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/megahit/work/.cache HOME=/wrkdirs/usr/ports/biology/megahit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/megahit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/megahit/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/biology/megahit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/megahit/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/megahit/work/.cache HOME=/wrkdirs/usr/ports/biology/megahit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/megahit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/megahit/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/megahit/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/megahit" EXAMPLESDIR="share/examples/megahit" DATADIR="share/megahit" WWWDIR="www/megahit" ETCDIR="etc/megahit" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/megahit DOCSDIR=/usr/local/share/doc/megahit EXAMPLESDIR=/usr/local/share/examples/megahit WWWDIR=/usr/local/www/megahit ETCDIR=/usr/local/etc/megahit --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3 accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> megahit-1.2.9_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.9.pkg [140releng-powerpc64le-quarterly-job-17] Installing pkg-1.20.9... [140releng-powerpc64le-quarterly-job-17] Extracting pkg-1.20.9: .......... done ===> megahit-1.2.9_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of megahit-1.2.9_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by megahit-1.2.9_1 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by megahit-1.2.9_1 for building => SHA256 Checksum OK for voutcn-megahit-v1.2.9_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by megahit-1.2.9_1 for building ===> Extracting for megahit-1.2.9_1 => SHA256 Checksum OK for voutcn-megahit-v1.2.9_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for megahit-1.2.9_1 ===> Applying FreeBSD patches for megahit-1.2.9_1 from /usr/ports/biology/megahit/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> megahit-1.2.9_1 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.26.1_3.pkg [140releng-powerpc64le-quarterly-job-17] Installing cmake-core-3.26.1_3... [140releng-powerpc64le-quarterly-job-17] `-- Installing expat-2.5.0... [140releng-powerpc64le-quarterly-job-17] `-- Extracting expat-2.5.0: .......... done [140releng-powerpc64le-quarterly-job-17] `-- Installing jsoncpp-1.9.5... [140releng-powerpc64le-quarterly-job-17] `-- Extracting jsoncpp-1.9.5: .......... done [140releng-powerpc64le-quarterly-job-17] `-- Installing libuv-1.46.0... [140releng-powerpc64le-quarterly-job-17] `-- Extracting libuv-1.46.0: .......... done [140releng-powerpc64le-quarterly-job-17] `-- Installing rhash-1.4.4... [140releng-powerpc64le-quarterly-job-17] | `-- Installing gettext-runtime-0.22_1... [140releng-powerpc64le-quarterly-job-17] | | `-- Installing indexinfo-0.3.1... [140releng-powerpc64le-quarterly-job-17] | | `-- Extracting indexinfo-0.3.1: .... done [140releng-powerpc64le-quarterly-job-17] | `-- Extracting gettext-runtime-0.22_1: .......... done [140releng-powerpc64le-quarterly-job-17] `-- Extracting rhash-1.4.4: .......... done [140releng-powerpc64le-quarterly-job-17] Extracting cmake-core-3.26.1_3: .......... done ===> megahit-1.2.9_1 depends on file: /usr/local/bin/cmake - found ===> Returning to build of megahit-1.2.9_1 ===> megahit-1.2.9_1 depends on executable: ninja - not found ===> Installing existing package /packages/All/ninja-1.11.1,2.pkg [140releng-powerpc64le-quarterly-job-17] Installing ninja-1.11.1,2... [140releng-powerpc64le-quarterly-job-17] `-- Installing python39-3.9.18... [140releng-powerpc64le-quarterly-job-17] | `-- Installing libffi-3.4.4... [140releng-powerpc64le-quarterly-job-17] | `-- Extracting libffi-3.4.4: .......... done [140releng-powerpc64le-quarterly-job-17] | `-- Installing mpdecimal-2.5.1... [140releng-powerpc64le-quarterly-job-17] | `-- Extracting mpdecimal-2.5.1: .......... done ReadReadsAndProcess(opt, index); ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here runners.emplace_back(new Runner>()); ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] : std::integral_constant, unsigned short>>>' requested here is_trivially_destructible::value> ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:1923:32: note: in instantiation of template class 'phmap::is_trivially_copy_constructible, unsigned short>>>' requested here bool unused = phmap::is_trivially_copy_constructible::value&& ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here class optional : private optional_internal::optional_data, ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here phmap::optional alloc_; ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here class node_handle : public node_handle_base ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/iterate/kmer_collector.h:38:24: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) collection_.insert({kmer, mul}); ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:156:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here if (ReadReadsAndProcessKernel>(opt, index)) return; ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here ReadReadsAndProcess(opt, index); ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here runners.emplace_back(new Runner>()); ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:367:17: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins] bool, __has_trivial_assign(typename std::remove_reference::type) && ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:1924:22: note: in instantiation of template class 'phmap::is_trivially_copy_assignable, unsigned short>>>' requested here phmap::is_trivially_copy_assignable, unsigned short>>>' required here class optional : private optional_internal::optional_data, ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here phmap::optional alloc_; ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here class node_handle : public node_handle_base ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here collection_.insert({kmer, mul}); ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:156:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here if (ReadReadsAndProcessKernel>(opt, index)) return; ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here ReadReadsAndProcess(opt, index); ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here runners.emplace_back(new Runner>()); ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:329:36: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] : std::integral_constant, unsigned short>>>' requested here bool unused = phmap::is_trivially_copy_constructible::value&& ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here class optional : private optional_internal::optional_data, ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here phmap::optional alloc_; ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here class node_handle : public node_handle_base ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here collection_.insert({kmer, mul}); ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:157:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here if (ReadReadsAndProcessKernel>(opt, index)) ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here ReadReadsAndProcess(opt, index); ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here runners.emplace_back(new Runner>()); ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] : std::integral_constant, unsigned short>>>' requested here is_trivially_destructible::value> ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:1923:32: note: in instantiation of template class 'phmap::is_trivially_copy_constructible, unsigned short>>>' requested here bool unused = phmap::is_trivially_copy_constructible::value&& ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here class optional : private optional_internal::optional_data, ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here phmap::optional alloc_; ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here class node_handle : public node_handle_base ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/iterate/kmer_collector.h:38:24: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) collection_.insert({kmer, mul}); ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:157:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here if (ReadReadsAndProcessKernel>(opt, index)) ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here ReadReadsAndProcess(opt, index); ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here runners.emplace_back(new Runner>()); ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:367:17: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins] bool, __has_trivial_assign(typename std::remove_reference::type) && ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:1924:22: note: in instantiation of template class 'phmap::is_trivially_copy_assignable, unsigned short>>>' requested here phmap::is_trivially_copy_assignable, unsigned short>>>' required here class optional : private optional_internal::optional_data, ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here phmap::optional alloc_; ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here class node_handle : public node_handle_base ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here collection_.insert({kmer, mul}); ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:157:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here if (ReadReadsAndProcessKernel>(opt, index)) ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here ReadReadsAndProcess(opt, index); ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here runners.emplace_back(new Runner>()); ^ 29 warnings generated. ninja: build stopped: subcommand failed. ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/biology/megahit