From nobody Sat Dec 16 17:43:54 2023 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4Sstk263bGz54Cs3 for ; Sat, 16 Dec 2023 17:43:54 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4Sstk2407dz3RGf for ; Sat, 16 Dec 2023 17:43:54 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1702748634; a=rsa-sha256; cv=none; b=TGqir/89gPBlVktxuAeNXtzQEsQazalraC58mlUibmPWkZOoXO9xiNspAOp8XruuL2nebt xY7xXxsoBLeqFwoZj0W8ioIb5sgGbG5FNEal9xT/DS4womwwX0HcpSioo7kmOpVixMHsaT yBZ2xZdEzH2kq4RgaisbMsCOvX6O/SBD+JTlBQbaDWxOr1kCrm9ry1nuNdKtliRoh41H0f y+JuSYXBxHIhJ3/jDKWjdllGF4agSQnuKfHHS7wHtc8/78KJjeulnGVCHySb6ooiA6DSYe rxwMCKGDEKDlDweqm0N8GltuuehHqEFtr6ko985Gxehbkshm1mWVB+cLw8RFtg== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1702748634; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc; bh=lxE/G96Oq4Ayx2x2OdRUMCNCgXs7rTXY4+fTEzENZVg=; b=K5LrsePRVIBWI1CINjx4k3NUBLb8uFgGkpYL8uPcTcmGUtGil/20VzBpnBQuWAxCB0s6xO MUBw0U3Km3z6/G0cuFZVqCo7B6HOPOYqe3HPES3pqPsbprj3ht432YPutAMA3SfFubaEQW Kcrb/euGDcjC+pF152Yb9B8wLsyYiDVPD4fHrDykeWqyIXMQ2jeD9PdsyR8lahl//FEUEB j5dYJczkjRNys9QQrGFkByW8NeWgH+dFXoVS1+IUzlqPubOqu9HeKNrEeUCIbw3KEh6a0Q X9nE97a51uvUhGmiIsNOnwh98P7flwdwGzuia4mGuHSAFQEHm708bkTU7GaMrg== Received: from beefy16.nyi.freebsd.org (beefy16.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:1f]) by mxrelay.nyi.freebsd.org (Postfix) with ESMTP id 4Sstk22wJhz13gR for ; Sat, 16 Dec 2023 17:43:54 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from root (uid 0) (envelope-from pkg-fallout@FreeBSD.org) id 244 by beefy16.nyi.freebsd.org (DragonFly Mail Agent v0.13+ on beefy16.nyi.freebsd.org); Sat, 16 Dec 2023 17:43:54 +0000 To: jwb@FreeBSD.org Subject: [package - 132amd64-default][biology/py-pybigwig] Failed for py39-pyBigWig-0.3.21 in build Cc: pkg-fallout@FreeBSD.org Date: Sat, 16 Dec 2023 17:43:54 +0000 Message-Id: <657de1da.244.702b183c@beefy16.nyi.freebsd.org> From: List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jwb@FreeBSD.org Log URL: https://pkg-status.freebsd.org/beefy16/data/132amd64-default/997912672fbe/logs/py39-pyBigWig-0.3.21.log Build URL: https://pkg-status.freebsd.org/beefy16/build.html?mastername=132amd64-default&build=997912672fbe Log: =>> Building biology/py-pybigwig build started at Sat Dec 16 17:43:44 UTC 2023 port directory: /usr/ports/biology/py-pybigwig package name: py39-pyBigWig-0.3.21 building for: FreeBSD 132amd64-default-job-04 13.2-RELEASE-p8 FreeBSD 13.2-RELEASE-p8 amd64 maintained by: jwb@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 495 Apr 4 2023 /usr/ports/biology/py-pybigwig/Makefile Ports top last git commit: 997912672fb Ports top unclean checkout: no Port dir last git commit: 13d6c974c48 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.0 Host OSVERSION: 1500006 Jail OSVERSION: 1302001 Job Id: 04 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1302001 UNAME_v=FreeBSD 13.2-RELEASE-p8 UNAME_r=13.2-RELEASE-p8 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.0 MASTERMNT=/usr/local/poudriere/data/.m/132amd64-default/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/132amd64-default/04/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=132amd64-default SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/132amd64-default/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.0 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py39 MAKE_ARGS= FLAVOR=py39 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-pybigwig/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-pybigwig/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-pybigwig/work-py39/.cache HOME=/wrkdirs/usr/ports/biology/py-pybigwig/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-pybigwig/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-pybigwig/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-pybigwig/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-pybigwig/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-pybigwig/work-py39/.cache HOME=/wrkdirs/usr/ports/biology/py-pybigwig/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-pybigwig/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-pybigwig/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -fstack-protector-strong " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=13.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/pyBigWig" EXAMPLESDIR="share/examples/pyBigWig" DATADIR="share/pyBigWig" WWWDIR="www/pyBigWig" ETCDIR="etc/pyBigWig" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/pyBigWig DOCSDIR=/usr/local/share/doc/pyBigWig EXAMPLESDIR=/usr/local/share/examples/pyBigWig WWWDIR=/usr/local/www/pyBigWig ETCDIR=/usr/local/etc/pyBigWig --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py39-pyBigWig-0.3.21 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.9.pkg [132amd64-default-job-04] Installing pkg-1.20.9... [132amd64-default-job-04] Extracting pkg-1.20.9: .......... done ===> py39-pyBigWig-0.3.21 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py39-pyBigWig-0.3.21 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user ===> Fetching all distfiles required by py39-pyBigWig-0.3.21 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user ===> Fetching all distfiles required by py39-pyBigWig-0.3.21 for building => SHA256 Checksum OK for pyBigWig-0.3.21.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user ===> Fetching all distfiles required by py39-pyBigWig-0.3.21 for building ===> Extracting for py39-pyBigWig-0.3.21 => SHA256 Checksum OK for pyBigWig-0.3.21.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for py39-pyBigWig-0.3.21 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py39-pyBigWig-0.3.21 depends on package: py39-setuptools>=63.1.0 - not found ===> Installing existing package /packages/All/py39-setuptools-63.1.0_1.pkg [132amd64-default-job-04] Installing py39-setuptools-63.1.0_1... [132amd64-default-job-04] `-- Installing python39-3.9.18... [132amd64-default-job-04] | `-- Installing gettext-runtime-0.22.3... [132amd64-default-job-04] | | `-- Installing indexinfo-0.3.1... [132amd64-default-job-04] | | `-- Extracting indexinfo-0.3.1: .... done [132amd64-default-job-04] | `-- Extracting gettext-runtime-0.22.3: .......... done [132amd64-default-job-04] | `-- Installing libffi-3.4.4... [132amd64-default-job-04] | `-- Extracting libffi-3.4.4: .......... done [132amd64-default-job-04] | `-- Installing mpdecimal-2.5.1... [132amd64-default-job-04] | `-- Extracting mpdecimal-2.5.1: .......... done [132amd64-default-job-04] | `-- Installing readline-8.2.7... [132amd64-default-job-04] | `-- Extracting readline-8.2.7: .......... done [132amd64-default-job-04] `-- Extracting python39-3.9.18: .......... done [132amd64-default-job-04] Extracting py39-setuptools-63.1.0_1: .......... done ===== Message from python39-3.9.18: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 ===> py39-pyBigWig-0.3.21 depends on package: py39-setuptools>=63.1.0 - found ===> Returning to build of py39-pyBigWig-0.3.21 ===> py39-pyBigWig-0.3.21 depends on file: /usr/local/bin/python3.9 - found =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py39-pyBigWig-0.3.21 depends on shared library: libcurl.so - not found ===> Installing existing package /packages/All/curl-8.5.0.pkg [132amd64-default-job-04] Installing curl-8.5.0... [132amd64-default-job-04] `-- Installing libnghttp2-1.58.0... [132amd64-default-job-04] `-- Extracting libnghttp2-1.58.0: .......... done [132amd64-default-job-04] `-- Installing libpsl-0.21.2_4... [132amd64-default-job-04] | `-- Installing libidn2-2.3.4... [132amd64-default-job-04] | | `-- Installing libunistring-1.1... [132amd64-default-job-04] | | `-- Extracting libunistring-1.1: .......... done [132amd64-default-job-04] | `-- Extracting libidn2-2.3.4: .......... done [132amd64-default-job-04] `-- Extracting libpsl-0.21.2_4: .......... done [132amd64-default-job-04] `-- Installing libssh2-1.11.0,3... [132amd64-default-job-04] `-- Extracting libssh2-1.11.0,3: .......... done [132amd64-default-job-04] Extracting curl-8.5.0: .......... done ===> py39-pyBigWig-0.3.21 depends on shared library: libcurl.so - found (/usr/local/lib/libcurl.so) ===> Returning to build of py39-pyBigWig-0.3.21 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for py39-pyBigWig-0.3.21 /usr/local/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:104: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. warnings.warn(msg, _BetaConfiguration) running config =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for py39-pyBigWig-0.3.21 /usr/local/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:104: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. warnings.warn(msg, _BetaConfiguration) running build running build_py creating build creating build/lib.freebsd-13.2-RELEASE-p8-amd64-cpython-39 creating build/lib.freebsd-13.2-RELEASE-p8-amd64-cpython-39/pyBigWigTest copying pyBigWigTest/__init__.py -> build/lib.freebsd-13.2-RELEASE-p8-amd64-cpython-39/pyBigWigTest copying pyBigWigTest/test.py -> build/lib.freebsd-13.2-RELEASE-p8-amd64-cpython-39/pyBigWigTest running egg_info writing pyBigWig.egg-info/PKG-INFO writing dependency_links to pyBigWig.egg-info/dependency_links.txt writing top-level names to pyBigWig.egg-info/top_level.txt reading manifest file 'pyBigWig.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.txt' writing manifest file 'pyBigWig.egg-info/SOURCES.txt' copying pyBigWigTest/test.bigBed -> build/lib.freebsd-13.2-RELEASE-p8-amd64-cpython-39/pyBigWigTest copying pyBigWigTest/test.bw -> build/lib.freebsd-13.2-RELEASE-p8-amd64-cpython-39/pyBigWigTest running build_ext building 'pyBigWig' extension creating build/temp.freebsd-13.2-RELEASE-p8-amd64-cpython-39 creating build/temp.freebsd-13.2-RELEASE-p8-amd64-cpython-39/libBigWig cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -IlibBigWig -I/usr/local/include/python3.9 -I/usr/local/include/python3.9 -c libBigWig/bwRead.c -o build/temp.freebsd-13.2-RELEASE-p8-amd64-cpython-39/libBigWig/bwRead.o cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -IlibBigWig -I/usr/local/include/python3.9 -I/usr/local/include/python3.9 -c libBigWig/bwStats.c -o build/temp.freebsd-13.2-RELEASE-p8-amd64-cpython-39/libBigWig/bwStats.o cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -IlibBigWig -I/usr/local/include/python3.9 -I/usr/local/include/python3.9 -c libBigWig/bwValues.c -o build/temp.freebsd-13.2-RELEASE-p8-amd64-cpython-39/libBigWig/bwValues.o libBigWig/bwValues.c:8:35: error: too few arguments provided to function-like macro invocation static uint32_t roundup(uint32_t v) { ^ /usr/include/sys/param.h:309:9: note: macro 'roundup' defined here #define roundup(x, y) ((((x)+((y)-1))/(y))*(y)) /* to any y */ ^ libBigWig/bwValues.c:8:24: error: expected ';' after top level declarator static uint32_t roundup(uint32_t v) { ^ ; libBigWig/bwValues.c:349:30: error: too few arguments provided to function-like macro invocation o->m = roundup(o->l+1); ^ /usr/include/sys/param.h:309:9: note: macro 'roundup' defined here #define roundup(x, y) ((((x)+((y)-1))/(y))*(y)) /* to any y */ ^ libBigWig/bwValues.c:369:30: error: too few arguments provided to function-like macro invocation o->m = roundup(o->l+1); ^ /usr/include/sys/param.h:309:9: note: macro 'roundup' defined here #define roundup(x, y) ((((x)+((y)-1))/(y))*(y)) /* to any y */ ^ 4 errors generated. error: command '/usr/bin/cc' failed with exit code 1 *** Error code 1 Stop. make: stopped in /usr/ports/biology/py-pybigwig