From nobody Thu Dec 07 11:58:42 2023 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4SmCTv5bW0z545wD for ; Thu, 7 Dec 2023 11:58:43 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4SmCTt6vPkz3NTf for ; Thu, 7 Dec 2023 11:58:42 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1701950322; a=rsa-sha256; cv=none; b=V404Oa5QABtrk2YdjANUpbN6SmdHp4A1Iw7U/1lYcL6lL3P7AFhXUb1qJAKriZ5gbJDdAg 6EZk5cbL0cdp06yvxZqTne8R6WqwOAcyLUvvDs+ZGEodRtdt6uuCLk3DqrxumY3YKIcMfi wYLzS2WPy0Gap1cRuC+sAlthFJsntHoGK2G8GlTdMBgQU0h6gmPhlo0XkS4y/maJnW+I8x nVKVQdMLygvvwFCesDQfvpQ/F9MihOUrX2A61DviMtOm9y29Upp/64x7xI6YmzysCEip6U jM0mxWws5m+jkK8ZNY0DP/p1XqB9iiGUYLBpG3RdYln1Qcl3Oy4BSsFsPKKwUg== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1701950322; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc; bh=HSoKGv3mSPbmAUAOpxDV4JPMwKyQf06J2/7zb/t0y58=; b=CDb83Au8K8Zt343f2x97qtku6kPfJtAQ+aBzTJn0ZQ9mHpNyHksG3fi+4IUd0ewG9Dr5MS sK+SkOKpX38UR12ToS0j3RInoS7aa8v4yYgo9kwP92oVhsrR0P2LnEJzJGn+SoaBHrssCy GRJ46XI75frWaE1f2ETYu7qAhaC3SbeLiUw8cs0MixE7IRYI144JxUrOxYyU/5Rtjlm4ES XvDEJrW88qjl9/ixwtQ6x1N37hTu8W7OdWUGBGFZohHOHtLYGsJEUHRtLNhAiucL4P4xEV SHCQVYSteT7tYsoZ5qjzuCubagPuPdJU04yT2UH8sVpy29G01LmCf9RqPcAjcQ== Received: from foul2.nyi.freebsd.org (foul2.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:27]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4SmCTt5w84zbQZ for ; Thu, 7 Dec 2023 11:58:42 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from foul2.nyi.freebsd.org (localhost [127.0.0.1]) by foul2.nyi.freebsd.org (8.17.1/8.17.1) with ESMTP id 3B7BwgdH012435 for ; Thu, 7 Dec 2023 11:58:42 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by foul2.nyi.freebsd.org (8.17.1/8.17.1/Submit) id 3B7BwggJ012411; Thu, 7 Dec 2023 11:58:42 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Thu, 7 Dec 2023 11:58:42 GMT From: pkg-fallout@FreeBSD.org Message-Id: <202312071158.3B7BwggJ012411@foul2.nyi.freebsd.org> To: pkg-fallout@FreeBSD.org Subject: [package - main-powerpc64le-default][biology/emboss] Failed for emboss-6.6.0_7 in build List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: wen@FreeBSD.org Log URL: https://pkg-status.freebsd.org/foul2/data/main-powerpc64le-default/pff89313922da_s51e7276365/logs/emboss-6.6.0_7.log Build URL: https://pkg-status.freebsd.org/foul2/build.html?mastername=main-powerpc64le-default&build=pff89313922da_s51e7276365 Log: =>> Building biology/emboss build started at Thu Dec 7 11:51:43 UTC 2023 port directory: /usr/ports/biology/emboss package name: emboss-6.6.0_7 building for: FreeBSD main-powerpc64le-default-job-03 15.0-CURRENT FreeBSD 15.0-CURRENT 1500005 powerpc maintained by: wen@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1766 Nov 12 01:03 /usr/ports/biology/emboss/Makefile Ports top last git commit: ff89313922 Ports top unclean checkout: no Port dir last git commit: 23253ea43f Port dir unclean checkout: no Poudriere version: poudriere-git-3.3.0-1258-gbc38e2e6 Host OSVERSION: 1500000 Jail OSVERSION: 1500005 Job Id: 03 !!! Jail is newer than host. (Jail: 1500005, Host: 1500000) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/sh OSVERSION=1500005 UNAME_v=FreeBSD 15.0-CURRENT 1500005 UNAME_r=15.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.3.0-1258-gbc38e2e6 MASTERMNT=/usr/local/poudriere/data/.m/main-powerpc64le-default/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/main-powerpc64le-default/03/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=main-powerpc64le-default SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/main-powerpc64le-default/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.3.0-1258-gbc38e2e6 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for emboss-6.6.0_7: DOCS=on: Build and/or install documentation MYSQL=off: MySQL database support X11=on: X11 (graphics) support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- wen@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --with-docroot=/usr/local/emboss/share/EMBOSS/doc --x-libraries=/usr/local/lib --x-includes=/usr/local/include --prefix=/usr/local/emboss ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/emboss/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/emboss/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/emboss/work/.cache HOME=/wrkdirs/usr/ports/biology/emboss/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/emboss/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/emboss/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288 --End CONFIGURE_ENV-- --MAKE_ENV-- OPENSSLBASE=/usr OPENSSLDIR=/etc/ssl OPENSSLINC=/usr/include OPENSSLLIB=/usr/lib MOTIFLIB="-L/usr/local/lib -lXm" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/emboss/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/emboss/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/emboss/work/.cache HOME=/wrkdirs/usr/ports/biology/emboss/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/emboss/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/emboss/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local/emboss LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include" LDFLAGS=" -L/usr/local/lib -fstack-protector-strong -L/usr/local/l ib " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include " MANPREFIX="/usr/local/emboss" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local/emboss LIB32DIR=lib DOCSDIR="share/EMBOSS/doc" EXAMPLESDIR="share/examples/emboss" DATADIR="share/EMBOSS" WWWDIR="www/emboss" ETCDIR="etc/emboss" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local/emboss DATADIR=/usr/local/emboss/share/EMBOSS PREFIX=/usr/local/emboss LOCALBASE=/usr/local DATADIR=/usr/local/emboss/share/EMBOSS DOCSDIR=/usr/local/emboss/share/EMBOSS/doc EXAMPLESDIR=/usr/local/emboss/share/examples/emboss WWWDIR=/usr/local/emboss/www/emboss ETCDIR=/usr/local/emboss/etc/emboss --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv2 accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> emboss-6.6.0_7 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.9.pkg [main-powerpc64le-default-job-03] Installing pkg-1.20.9... [main-powerpc64le-default-job-03] Extracting pkg-1.20.9: .......... done ===> emboss-6.6.0_7 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of emboss-6.6.0_7 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by emboss-6.6.0_7 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by emboss-6.6.0_7 for building => SHA256 Checksum OK for emboss/EMBOSS-6.6.0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by emboss-6.6.0_7 for building ===> Extracting for emboss-6.6.0_7 ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by emboss-6.6.0_7 for building => SHA256 Checksum OK for emboss/EMBOSS-6.6.0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for emboss-6.6.0_7 ===> Applying FreeBSD patches for emboss-6.6.0_7 from /usr/ports/biology/emboss/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> emboss-6.6.0_7 depends on executable: clustalw - not found ===> Installing existing package /packages/All/clustalw-2.1_3.pkg [main-powerpc64le-default-job-03] Installing clustalw-2.1_3... [main-powerpc64le-default-job-03] Extracting clustalw-2.1_3: ..... done ===> emboss-6.6.0_7 depends on executable: clustalw - found ===> Returning to build of emboss-6.6.0_7 ===> emboss-6.6.0_7 depends on executable: primer3 - not found ===> Installing existing package /packages/All/primer3-2.3.6.pkg [main-powerpc64le-default-job-03] Installing primer3-2.3.6... [main-powerpc64le-default-job-03] Extracting primer3-2.3.6: .... done trees.c:1222:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] local void copy_block(s, buf, len, header) ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT inftrees.lo -MD -MP -MF .deps/inftrees.Tpo -c inftrees.c -o inftrees.o >/dev/null 2>&1 mv -f .deps/inftrees.Tpo .deps/inftrees.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT uncompr.lo -MD -MP -MF .deps/uncompr.Tpo -c -o uncompr.lo uncompr.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT uncompr.lo -MD -MP -MF .deps/uncompr.Tpo -c uncompr.c -fPIC -DPIC -o .libs/uncompr.o uncompr.c:24:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] int ZEXPORT uncompress (dest, destLen, source, sourceLen) ^ ./zlibemboss.h:102:33: note: expanded from macro 'uncompress' # define uncompress euncompress ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT uncompr.lo -MD -MP -MF .deps/uncompr.Tpo -c uncompr.c -o uncompr.o >/dev/null 2>&1 18 warnings generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT inflate.lo -MD -MP -MF .deps/inflate.Tpo -c inflate.c -o inflate.o >/dev/null 2>&1 mv -f .deps/uncompr.Tpo .deps/uncompr.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT zutil.lo -MD -MP -MF .deps/zutil.Tpo -c -o zutil.lo zutil.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT zutil.lo -MD -MP -MF .deps/zutil.Tpo -c zutil.c -fPIC -DPIC -o .libs/zutil.o 20 warnings generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT trees.lo -MD -MP -MF .deps/trees.Tpo -c trees.c -o trees.o >/dev/null 2>&1 zutil.c:133:22: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] const char * ZEXPORT zError(err) ^ ./zlibemboss.h:103:33: note: expanded from macro 'zError' # define zError ezError ^ zutil.c:300:22: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] voidpf ZLIB_INTERNAL zcalloc (opaque, items, size) ^ ./zlibemboss.h:104:33: note: expanded from macro 'zcalloc' # define zcalloc ezcalloc ^ zutil.c:310:20: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] void ZLIB_INTERNAL zcfree (opaque, ptr) ^ ./zlibemboss.h:105:33: note: expanded from macro 'zcfree' # define zcfree ezcfree ^ 3 warnings generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT zutil.lo -MD -MP -MF .deps/zutil.Tpo -c zutil.c -o zutil.o >/dev/null 2>&1 mv -f .deps/zutil.Tpo .deps/zutil.Plo mv -f .deps/trees.Tpo .deps/trees.Plo mv -f .deps/inflate.Tpo .deps/inflate.Plo /bin/sh ../../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -version-info 2:0:1 -L/usr/local/lib -fstack-protector-strong -L/usr/local/lib -o libezlib.la -rpath /usr/local/emboss/lib adler32.lo compress.lo crc32.lo deflate.lo gzclose.lo gzlib.lo gzread.lo gzwrite.lo infback.lo inffast.lo inflate.lo inftrees.lo trees.lo uncompr.lo zutil.lo -lm -lgd -lpng -lz -lm libtool: link: cc -shared -fPIC -DPIC .libs/adler32.o .libs/compress.o .libs/crc32.o .libs/deflate.o .libs/gzclose.o .libs/gzlib.o .libs/gzread.o .libs/gzwrite.o .libs/infback.o .libs/inffast.o .libs/inflate.o .libs/inftrees.o .libs/trees.o .libs/uncompr.o .libs/zutil.o -Wl,-rpath -Wl,/usr/local/lib -Wl,-rpath -Wl,/usr/local/lib -L/usr/local/lib /usr/local/lib/libgd.so -lpng -lz -lm -O2 -fstack-protector-strong -O2 -fstack-protector-strong -Wl,-soname -Wl,libezlib.so.1 -o .libs/libezlib.so.1.1.0 libtool: link: (cd ".libs" && rm -f "libezlib.so.1" && ln -s "libezlib.so.1.1.0" "libezlib.so.1") libtool: link: (cd ".libs" && rm -f "libezlib.so" && ln -s "libezlib.so.1.1.0" "libezlib.so") libtool: link: ar cru .libs/libezlib.a adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o libtool: link: ranlib .libs/libezlib.a libtool: link: ( cd ".libs" && rm -f "libezlib.la" && ln -s "../libezlib.la" "libezlib.la" ) gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/zlib' Making all in core gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/core' gmake all-am gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/core' /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajalign.lo -MD -MP -MF .deps/libajax_la-ajalign.Tpo -c -o libajax_la-ajalign.lo `test -f 'ajalign.c' || echo './'`ajalign.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajarr.lo -MD -MP -MF .deps/libajax_la-ajarr.Tpo -c -o libajax_la-ajarr.lo `test -f 'ajarr.c' || echo './'`ajarr.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajassem.lo -MD -MP -MF .deps/libajax_la-ajassem.Tpo -c -o libajax_la-ajassem.lo `test -f 'ajassem.c' || echo './'`ajassem.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajarr.lo -MD -MP -MF .deps/libajax_la-ajarr.Tpo -c ajarr.c -fPIC -DPIC -o .libs/libajax_la-ajarr.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajalign.lo -MD -MP -MF .deps/libajax_la-ajalign.Tpo -c ajalign.c -fPIC -DPIC -o .libs/libajax_la-ajalign.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajassem.lo -MD -MP -MF .deps/libajax_la-ajassem.Tpo -c ajassem.c -fPIC -DPIC -o .libs/libajax_la-ajassem.o ajassem.c:1015:35: warning: adding 'char' to a string does not append to the string [-Wstring-plus-int] ajErr("unrecognised cigar op: " + cigar->cigoperator[i]); ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ ajassem.c:1015:35: note: use array indexing to silence this warning ajErr("unrecognised cigar op: " + cigar->cigoperator[i]); ^ & [ ] 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajassem.lo -MD -MP -MF .deps/libajax_la-ajassem.Tpo -c ajassem.c -o libajax_la-ajassem.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajassem.Tpo .deps/libajax_la-ajassem.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajassemread.lo -MD -MP -MF .deps/libajax_la-ajassemread.Tpo -c -o libajax_la-ajassemread.lo `test -f 'ajassemread.c' || echo './'`ajassemread.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajassemread.lo -MD -MP -MF .deps/libajax_la-ajassemread.Tpo -c ajassemread.c -fPIC -DPIC -o .libs/libajax_la-ajassemread.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajassemread.lo -MD -MP -MF .deps/libajax_la-ajassemread.Tpo -c ajassemread.c -o libajax_la-ajassemread.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajalign.lo -MD -MP -MF .deps/libajax_la-ajalign.Tpo -c ajalign.c -o libajax_la-ajalign.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajarr.lo -MD -MP -MF .deps/libajax_la-ajarr.Tpo -c ajarr.c -o libajax_la-ajarr.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajassemread.Tpo .deps/libajax_la-ajassemread.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajassemwrite.lo -MD -MP -MF .deps/libajax_la-ajassemwrite.Tpo -c -o libajax_la-ajassemwrite.lo `test -f 'ajassemwrite.c' || echo './'`ajassemwrite.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajassemwrite.lo -MD -MP -MF .deps/libajax_la-ajassemwrite.Tpo -c ajassemwrite.c -fPIC -DPIC -o .libs/libajax_la-ajassemwrite.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajassemwrite.lo -MD -MP -MF .deps/libajax_la-ajassemwrite.Tpo -c ajassemwrite.c -o libajax_la-ajassemwrite.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajalign.Tpo .deps/libajax_la-ajalign.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajassert.lo -MD -MP -MF .deps/libajax_la-ajassert.Tpo -c -o libajax_la-ajassert.lo `test -f 'ajassert.c' || echo './'`ajassert.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajassert.lo -MD -MP -MF .deps/libajax_la-ajassert.Tpo -c ajassert.c -fPIC -DPIC -o .libs/libajax_la-ajassert.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajassert.lo -MD -MP -MF .deps/libajax_la-ajassert.Tpo -c ajassert.c -o libajax_la-ajassert.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajassert.Tpo .deps/libajax_la-ajassert.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajbamindex.lo -MD -MP -MF .deps/libajax_la-ajbamindex.Tpo -c -o libajax_la-ajbamindex.lo `test -f 'ajbamindex.c' || echo './'`ajbamindex.c mv -f .deps/libajax_la-ajassemwrite.Tpo .deps/libajax_la-ajassemwrite.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajbase.lo -MD -MP -MF .deps/libajax_la-ajbase.Tpo -c -o libajax_la-ajbase.lo `test -f 'ajbase.c' || echo './'`ajbase.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajbamindex.lo -MD -MP -MF .deps/libajax_la-ajbamindex.Tpo -c ajbamindex.c -fPIC -DPIC -o .libs/libajax_la-ajbamindex.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajbase.lo -MD -MP -MF .deps/libajax_la-ajbase.Tpo -c ajbase.c -fPIC -DPIC -o .libs/libajax_la-ajbase.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajbase.lo -MD -MP -MF .deps/libajax_la-ajbase.Tpo -c ajbase.c -o libajax_la-ajbase.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajarr.Tpo .deps/libajax_la-ajarr.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajcall.lo -MD -MP -MF .deps/libajax_la-ajcall.Tpo -c -o libajax_la-ajcall.lo `test -f 'ajcall.c' || echo './'`ajcall.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajcall.lo -MD -MP -MF .deps/libajax_la-ajcall.Tpo -c ajcall.c -fPIC -DPIC -o .libs/libajax_la-ajcall.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajbamindex.lo -MD -MP -MF .deps/libajax_la-ajbamindex.Tpo -c ajbamindex.c -o libajax_la-ajbamindex.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajbase.Tpo .deps/libajax_la-ajbase.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajcigar.lo -MD -MP -MF .deps/libajax_la-ajcigar.Tpo -c -o libajax_la-ajcigar.lo `test -f 'ajcigar.c' || echo './'`ajcigar.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajcall.lo -MD -MP -MF .deps/libajax_la-ajcall.Tpo -c ajcall.c -o libajax_la-ajcall.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajcigar.lo -MD -MP -MF .deps/libajax_la-ajcigar.Tpo -c ajcigar.c -fPIC -DPIC -o .libs/libajax_la-ajcigar.o mv -f .deps/libajax_la-ajcall.Tpo .deps/libajax_la-ajcall.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajcod.lo -MD -MP -MF .deps/libajax_la-ajcod.Tpo -c -o libajax_la-ajcod.lo `test -f 'ajcod.c' || echo './'`ajcod.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajcod.lo -MD -MP -MF .deps/libajax_la-ajcod.Tpo -c ajcod.c -fPIC -DPIC -o .libs/libajax_la-ajcod.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajcigar.lo -MD -MP -MF .deps/libajax_la-ajcigar.Tpo -c ajcigar.c -o libajax_la-ajcigar.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajcigar.Tpo .deps/libajax_la-ajcigar.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajdan.lo -MD -MP -MF .deps/libajax_la-ajdan.Tpo -c -o libajax_la-ajdan.lo `test -f 'ajdan.c' || echo './'`ajdan.c mv -f .deps/libajax_la-ajbamindex.Tpo .deps/libajax_la-ajbamindex.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajdmx.lo -MD -MP -MF .deps/libajax_la-ajdmx.Tpo -c -o libajax_la-ajdmx.lo `test -f 'ajdmx.c' || echo './'`ajdmx.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajdan.lo -MD -MP -MF .deps/libajax_la-ajdan.Tpo -c ajdan.c -fPIC -DPIC -o .libs/libajax_la-ajdan.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajdmx.lo -MD -MP -MF .deps/libajax_la-ajdmx.Tpo -c ajdmx.c -fPIC -DPIC -o .libs/libajax_la-ajdmx.o ajdmx.c:1557:27: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] if((scophit->Type == ajEDomainTypeSCOP)) ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ ajdmx.c:1557:27: note: remove extraneous parentheses around the comparison to silence this warning if((scophit->Type == ajEDomainTypeSCOP)) ~ ^ ~ ajdmx.c:1557:27: note: use '=' to turn this equality comparison into an assignment if((scophit->Type == ajEDomainTypeSCOP)) ^~ = ajdmx.c:1559:33: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] else if ((scophit->Type == ajEDomainTypeCATH)) ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ ajdmx.c:1559:33: note: remove extraneous parentheses around the comparison to silence this warning else if ((scophit->Type == ajEDomainTypeCATH)) ~ ^ ~ ajdmx.c:1559:33: note: use '=' to turn this equality comparison into an assignment else if ((scophit->Type == ajEDomainTypeCATH)) ^~ = libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajdan.lo -MD -MP -MF .deps/libajax_la-ajdan.Tpo -c ajdan.c -o libajax_la-ajdan.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajdan.Tpo .deps/libajax_la-ajdan.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajdom.lo -MD -MP -MF .deps/libajax_la-ajdom.Tpo -c -o libajax_la-ajdom.lo `test -f 'ajdom.c' || echo './'`ajdom.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajdom.lo -MD -MP -MF .deps/libajax_la-ajdom.Tpo -c ajdom.c -fPIC -DPIC -o .libs/libajax_la-ajdom.o 2 warnings generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajdmx.lo -MD -MP -MF .deps/libajax_la-ajdmx.Tpo -c ajdmx.c -o libajax_la-ajdmx.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajcod.lo -MD -MP -MF .deps/libajax_la-ajcod.Tpo -c ajcod.c -o libajax_la-ajcod.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajdmx.Tpo .deps/libajax_la-ajdmx.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajdomain.lo -MD -MP -MF .deps/libajax_la-ajdomain.Tpo -c -o libajax_la-ajdomain.lo `test -f 'ajdomain.c' || echo './'`ajdomain.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajdomain.lo -MD -MP -MF .deps/libajax_la-ajdomain.Tpo -c ajdomain.c -fPIC -DPIC -o .libs/libajax_la-ajdomain.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajdom.lo -MD -MP -MF .deps/libajax_la-ajdom.Tpo -c ajdom.c -o libajax_la-ajdom.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajcod.Tpo .deps/libajax_la-ajcod.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajexcept.lo -MD -MP -MF .deps/libajax_la-ajexcept.Tpo -c -o libajax_la-ajexcept.lo `test -f 'ajexcept.c' || echo './'`ajexcept.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajexcept.lo -MD -MP -MF .deps/libajax_la-ajexcept.Tpo -c ajexcept.c -fPIC -DPIC -o .libs/libajax_la-ajexcept.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajexcept.lo -MD -MP -MF .deps/libajax_la-ajexcept.Tpo -c ajexcept.c -o libajax_la-ajexcept.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajexcept.Tpo .deps/libajax_la-ajexcept.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfeat.lo -MD -MP -MF .deps/libajax_la-ajfeat.Tpo -c -o libajax_la-ajfeat.lo `test -f 'ajfeat.c' || echo './'`ajfeat.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfeat.lo -MD -MP -MF .deps/libajax_la-ajfeat.Tpo -c ajfeat.c -fPIC -DPIC -o .libs/libajax_la-ajfeat.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajdomain.lo -MD -MP -MF .deps/libajax_la-ajdomain.Tpo -c ajdomain.c -o libajax_la-ajdomain.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajdom.Tpo .deps/libajax_la-ajdom.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfeatread.lo -MD -MP -MF .deps/libajax_la-ajfeatread.Tpo -c -o libajax_la-ajfeatread.lo `test -f 'ajfeatread.c' || echo './'`ajfeatread.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfeatread.lo -MD -MP -MF .deps/libajax_la-ajfeatread.Tpo -c ajfeatread.c -fPIC -DPIC -o .libs/libajax_la-ajfeatread.o mv -f .deps/libajax_la-ajdomain.Tpo .deps/libajax_la-ajdomain.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfeatwrite.lo -MD -MP -MF .deps/libajax_la-ajfeatwrite.Tpo -c -o libajax_la-ajfeatwrite.lo `test -f 'ajfeatwrite.c' || echo './'`ajfeatwrite.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfeatwrite.lo -MD -MP -MF .deps/libajax_la-ajfeatwrite.Tpo -c ajfeatwrite.c -fPIC -DPIC -o .libs/libajax_la-ajfeatwrite.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfeat.lo -MD -MP -MF .deps/libajax_la-ajfeat.Tpo -c ajfeat.c -o libajax_la-ajfeat.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfeatwrite.lo -MD -MP -MF .deps/libajax_la-ajfeatwrite.Tpo -c ajfeatwrite.c -o libajax_la-ajfeatwrite.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfeatread.lo -MD -MP -MF .deps/libajax_la-ajfeatread.Tpo -c ajfeatread.c -o libajax_la-ajfeatread.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajfeatwrite.Tpo .deps/libajax_la-ajfeatwrite.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfile.lo -MD -MP -MF .deps/libajax_la-ajfile.Tpo -c -o libajax_la-ajfile.lo `test -f 'ajfile.c' || echo './'`ajfile.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfile.lo -MD -MP -MF .deps/libajax_la-ajfile.Tpo -c ajfile.c -fPIC -DPIC -o .libs/libajax_la-ajfile.o mv -f .deps/libajax_la-ajfeat.Tpo .deps/libajax_la-ajfeat.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfiledata.lo -MD -MP -MF .deps/libajax_la-ajfiledata.Tpo -c -o libajax_la-ajfiledata.lo `test -f 'ajfiledata.c' || echo './'`ajfiledata.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfiledata.lo -MD -MP -MF .deps/libajax_la-ajfiledata.Tpo -c ajfiledata.c -fPIC -DPIC -o .libs/libajax_la-ajfiledata.o mv -f .deps/libajax_la-ajfeatread.Tpo .deps/libajax_la-ajfeatread.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfileio.lo -MD -MP -MF .deps/libajax_la-ajfileio.Tpo -c -o libajax_la-ajfileio.lo `test -f 'ajfileio.c' || echo './'`ajfileio.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfileio.lo -MD -MP -MF .deps/libajax_la-ajfileio.Tpo -c ajfileio.c -fPIC -DPIC -o .libs/libajax_la-ajfileio.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfiledata.lo -MD -MP -MF .deps/libajax_la-ajfiledata.Tpo -c ajfiledata.c -o libajax_la-ajfiledata.o >/dev/null 2>&1 ajfileio.c:271:7: warning: call to undeclared function 'ajSysFuncFgets'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration] cp = ajSysFuncFgets(&buff[ipos], isize, file->fp); ^ ajfileio.c:271:5: error: incompatible integer to pointer conversion assigning to 'const char *' from 'int' [-Wint-conversion] cp = ajSysFuncFgets(&buff[ipos], isize, file->fp); ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1 warning and 1 error generated. gmake[5]: *** [Makefile:884: libajax_la-ajfileio.lo] Error 1 gmake[5]: *** Waiting for unfinished jobs.... mv -f .deps/libajax_la-ajfiledata.Tpo .deps/libajax_la-ajfiledata.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfile.lo -MD -MP -MF .deps/libajax_la-ajfile.Tpo -c ajfile.c -o libajax_la-ajfile.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajfile.Tpo .deps/libajax_la-ajfile.Plo gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/core' gmake[4]: *** [Makefile:538: all] Error 2 gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/core' gmake[3]: *** [Makefile:329: all-recursive] Error 1 gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax' gmake[2]: *** [Makefile:375: all-recursive] Error 1 gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0' ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make[1]: stopped in /usr/ports/biology/emboss *** Error code 1 Stop. make: stopped in /usr/ports/biology/emboss