[package - 124i386-quarterly][biology/py-PySCeS] Failed for py39-PySCeS-1.1.0 in build
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Date: Tue, 22 Aug 2023 20:04:48 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy4/data/124i386-quarterly/f3d8c4bf5c40/logs/py39-PySCeS-1.1.0.log
Build URL: https://pkg-status.freebsd.org/beefy4/build.html?mastername=124i386-quarterly&build=f3d8c4bf5c40
Log:
=>> Building biology/py-PySCeS
build started at Tue Aug 22 20:04:11 UTC 2023
port directory: /usr/ports/biology/py-PySCeS
package name: py39-PySCeS-1.1.0
building for: FreeBSD 124i386-quarterly-job-06 12.4-RELEASE-p4 FreeBSD 12.4-RELEASE-p4 i386
maintained by: yuri@FreeBSD.org
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--End PLIST_SUB--
--SUB_LIST--
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=======================<phase: check-sanity >============================
===> License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> py39-PySCeS-1.1.0 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.19.2.pkg
[124i386-quarterly-job-06] Installing pkg-1.19.2...
[124i386-quarterly-job-06] Extracting pkg-1.19.2: .......... done
===> py39-PySCeS-1.1.0 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py39-PySCeS-1.1.0
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py39-PySCeS-1.1.0 for building
===========================================================================
=======================<phase: checksum >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py39-PySCeS-1.1.0 for building
=> SHA256 Checksum OK for pysces-1.1.0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py39-PySCeS-1.1.0 for building
===> Extracting for py39-PySCeS-1.1.0
=> SHA256 Checksum OK for pysces-1.1.0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for py39-PySCeS-1.1.0
===========================================================================
=======================<phase: build-depends >============================
===> py39-PySCeS-1.1.0 depends on package: py39-scikit-build>0 - not found
===> Installing existing package /packages/All/py39-scikit-build-0.16.7_1.pkg
[124i386-quarterly-job-06] Installing py39-scikit-build-0.16.7_1...
[124i386-quarterly-job-06] `-- Installing py39-distro-1.8.0_2...
[124i386-quarterly-job-06] | `-- Installing python39-3.9.17...
[124i386-quarterly-job-06] | | `-- Installing gettext-runtime-0.21.1...
[124i386-quarterly-job-06] | | `-- Installing indexinfo-0.3.1...
[124i386-quarterly-job-06] | | `-- Extracting indexinfo-0.3.1: .... done
[124i386-quarterly-job-06] | | `-- Extracting gettext-runtime-0.21.1: .......... done
[124i386-quarterly-job-06] | | `-- Installing libffi-3.4.4...
[124i386-quarterly-job-06] | | `-- Extracting libffi-3.4.4: .......... done
[124i386-quarterly-job-06] | | `-- Installing mpdecimal-2.5.1...
[124i386-quarterly-job-06] | | `-- Extracting mpdecimal-2.5.1: .......... done
<snip>
[124i386-quarterly-job-06] | | `-- Extracting giflib-5.2.1: .......... done
[124i386-quarterly-job-06] | `-- Extracting webp-1.3.0_1: .......... done
[124i386-quarterly-job-06] `-- Extracting py39-pillow-9.5.0: .......... done
[124i386-quarterly-job-06] `-- Installing py39-pluggy-1.0.0_1...
[124i386-quarterly-job-06] `-- Extracting py39-pluggy-1.0.0_1: .......... done
[124i386-quarterly-job-06] `-- Installing py39-pyparsing-3.0.9_2...
[124i386-quarterly-job-06] `-- Extracting py39-pyparsing-3.0.9_2: .......... done
[124i386-quarterly-job-06] `-- Installing py39-tornado-6.3.2...
[124i386-quarterly-job-06] `-- Extracting py39-tornado-6.3.2: .......... done
[124i386-quarterly-job-06] `-- Installing qhull-8.0.2_1,1...
[124i386-quarterly-job-06] `-- Extracting qhull-8.0.2_1,1: .......... done
[124i386-quarterly-job-06] Extracting py39-matplotlib-3.7.1_3: .......... done
Running fc-cache to build fontconfig cache...
Generating GIO modules cache
Compiling glib schemas
No schema files found: doing nothing.
=====
Message from freetype2-2.12.1_2:
--
The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as
the default, emulating a modern version of ClearType. This change inevitably
leads to different rendering results, and you might change port's options to
adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment
variable).
The environment variable "FREETYPE_PROPERTIES" can be used to control the
driver properties. Example:
FREETYPE_PROPERTIES=truetype:interpreter-version=35 \
cff:no-stem-darkening=1 \
autofitter:warping=1
This allows to select, say, the subpixel hinting mode at runtime for a given
application.
If LONG_PCF_NAMES port's option was enabled, the PCF family names may include
the foundry and information whether they contain wide characters. For example,
"Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at
run time with using pcf:no-long-family-names property, if needed. Example:
FREETYPE_PROPERTIES=pcf:no-long-family-names=1
How to recreate fontconfig cache with using such environment variable,
if needed:
# env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv
The controllable properties are listed in the section "Controlling FreeType
Modules" in the reference's table of contents
(/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed).
===> py39-PySCeS-1.1.0 depends on package: py39-matplotlib>0 - found
===> Returning to build of py39-PySCeS-1.1.0
===> py39-PySCeS-1.1.0 depends on package: py39-scipy>0 - not found
===> Installing existing package /packages/All/py39-scipy-1.10.1_1.pkg
[124i386-quarterly-job-06] Installing py39-scipy-1.10.1_1...
[124i386-quarterly-job-06] `-- Installing blas-3.11.0_1...
[124i386-quarterly-job-06] `-- Extracting blas-3.11.0_1: ........ done
[124i386-quarterly-job-06] Extracting py39-scipy-1.10.1_1: .......... done
===> py39-PySCeS-1.1.0 depends on package: py39-scipy>0 - found
===> Returning to build of py39-PySCeS-1.1.0
===> py39-PySCeS-1.1.0 depends on executable: gfortran12 - found
===> py39-PySCeS-1.1.0 depends on package: py39-setuptools>=63.1.0 - found
===> py39-PySCeS-1.1.0 depends on file: /usr/local/bin/python3.9 - found
===> py39-PySCeS-1.1.0 depends on file: /usr/local/bin/as - found
===========================================================================
=======================<phase: lib-depends >============================
===========================================================================
=======================<phase: configure >============================
===> Configuring for py39-PySCeS-1.1.0
setuptools is available.
bdist_conda not available.
'install_dir' :: /usr/local/lib/python3.9/site-packages/pysces
'model_dir' :: /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/Pysces/psc
'output_dir' :: /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/Pysces
'gnuplot_dir' :: None
'silentstart' :: False
'change_dir_on_start' :: False
Default configuration file installed
Building pitcon
Building nleq2
running config
===========================================================================
=======================<phase: build >============================
===> Building for py39-PySCeS-1.1.0
setuptools is available.
bdist_conda not available.
'install_dir' :: /usr/local/lib/python3.9/site-packages/pysces
'model_dir' :: /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/Pysces/psc
'output_dir' :: /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/Pysces
'gnuplot_dir' :: None
'silentstart' :: False
'change_dir_on_start' :: False
Default configuration file installed
Building pitcon
Building nleq2
--------------------------------------------------------------------------------
-- Trying 'Ninja' generator
--------------------------------
---------------------------
----------------------
-----------------
------------
-------
--
CMake Error: CMake was unable to find a build program corresponding to "Ninja". CMAKE_MAKE_PROGRAM is not set. You probably need to select a different build tool.Not searching for unused variables given on the command line.
-- Configuring incomplete, errors occurred!
--
-------
------------
-----------------
----------------------
---------------------------
--------------------------------
-- Trying 'Ninja' generator - failure
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-- Trying 'Unix Makefiles' generator
--------------------------------
---------------------------
----------------------
-----------------
------------
-------
--
Not searching for unused variables given on the command line.
-- The C compiler identification is unknown
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - failed
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc - broken
CMake Error at /usr/local/share/cmake/Modules/CMakeTestCCompiler.cmake:67 (message):
The C compiler
"/usr/bin/cc"
is not able to compile a simple test program.
It fails with the following output:
Change Dir: /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.0/_cmake_test_compile/build/CMakeFiles/CMakeScratch/TryCompile-IYX4b4
Run Build Command(s):/usr/local/bin/cmake -E env VERBOSE=1 /usr/bin/make -f Makefile cmTC_6fa00/fast && /usr/bin/make -f CMakeFiles/cmTC_6fa00.dir/build.make CMakeFiles/cmTC_6fa00.dir/build
Building C object CMakeFiles/cmTC_6fa00.dir/testCCompiler.c.o
/usr/bin/cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -o CMakeFiles/cmTC_6fa00.dir/testCCompiler.c.o -c /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.0/_cmake_test_compile/build/CMakeFiles/CMakeScratch/TryCompile-IYX4b4/testCCompiler.c
*** Signal 10
Stop.
make[2]: stopped in /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.0/_cmake_test_compile/build/CMakeFiles/CMakeScratch/TryCompile-IYX4b4
*** Error code 1
Stop.
make[1]: stopped in /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.0/_cmake_test_compile/build/CMakeFiles/CMakeScratch/TryCompile-IYX4b4
CMake will not be able to correctly generate this project.
Call Stack (most recent call first):
CMakeLists.txt:3 (ENABLE_LANGUAGE)
-- Configuring incomplete, errors occurred!
--
-------
------------
-----------------
----------------------
---------------------------
--------------------------------
-- Trying 'Unix Makefiles' generator - failure
--------------------------------------------------------------------------------
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "setup.py", line 217, in <module>
setup(
File "/usr/local/lib/python3.9/site-packages/skbuild/setuptools_wrap.py", line 634, in setup
env = cmkr.configure(
File "/usr/local/lib/python3.9/site-packages/skbuild/cmaker.py", line 236, in configure
generator = self.platform.get_best_generator(
File "/usr/local/lib/python3.9/site-packages/skbuild/platform_specifics/abstract.py", line 182, in get_best_generator
.format(line="*" * 80, installation_help=self.generator_installation_help)
File "/usr/local/lib/python3.9/site-packages/skbuild/platform_specifics/abstract.py", line 42, in generator_installation_help
raise NotImplementedError # pragma: no cover
NotImplementedError
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/py-PySCeS