[package - 131releng-armv7-quarterly][devel/R-cran-rJava] Failed for R-cran-rJava-1.0.6_1 in stage

From: <pkg-fallout_at_FreeBSD.org>
Date: Thu, 27 Apr 2023 03:03:57 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     thierry@FreeBSD.org
Log URL:        https://pkg-status.freebsd.org/ampere1/data/131releng-armv7-quarterly/60e7cbc83321/logs/R-cran-rJava-1.0.6_1.log
Build URL:      https://pkg-status.freebsd.org/ampere1/build.html?mastername=131releng-armv7-quarterly&build=60e7cbc83321
Log:

=>> Building devel/R-cran-rJava
build started at Thu Apr 27 03:03:09 UTC 2023
port directory: /usr/ports/devel/R-cran-rJava
package name: R-cran-rJava-1.0.6_1
building for: FreeBSD 131releng-armv7-quarterly-job-12 13.1-RELEASE-p7 FreeBSD 13.1-RELEASE-p7 1301000 arm
maintained by: thierry@FreeBSD.org
Makefile ident: 
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=======================<phase: check-sanity   >============================
===>  License LGPL21 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   R-cran-rJava-1.0.6_1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.19.1_1.pkg
[131releng-armv7-quarterly-job-12] Installing pkg-1.19.1_1...
[131releng-armv7-quarterly-job-12] Extracting pkg-1.19.1_1: .......... done
===>   R-cran-rJava-1.0.6_1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of R-cran-rJava-1.0.6_1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License LGPL21 accepted by the user
===> Fetching all distfiles required by R-cran-rJava-1.0.6_1 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License LGPL21 accepted by the user
===> Fetching all distfiles required by R-cran-rJava-1.0.6_1 for building
=> SHA256 Checksum OK for rJava_1.0-6.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License LGPL21 accepted by the user
===> Fetching all distfiles required by R-cran-rJava-1.0.6_1 for building
===>  Extracting for R-cran-rJava-1.0.6_1
=> SHA256 Checksum OK for rJava_1.0-6.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for R-cran-rJava-1.0.6_1
===========================================================================
=======================<phase: build-depends  >============================
===>   R-cran-rJava-1.0.6_1 depends on file: /usr/local/openjdk8/bin/java - not found
===>   Installing existing package /packages/All/openjdk8-8.362.09.1_1.pkg
[131releng-armv7-quarterly-job-12] Installing openjdk8-8.362.09.1_1...
[131releng-armv7-quarterly-job-12] `-- Installing alsa-lib-1.2.2_1...
[131releng-armv7-quarterly-job-12] `-- Extracting alsa-lib-1.2.2_1: .......... done
[131releng-armv7-quarterly-job-12] `-- Installing dejavu-2.37_1...
[131releng-armv7-quarterly-job-12] |   `-- Installing fontconfig-2.14.2,1...
[131releng-armv7-quarterly-job-12] |   | `-- Installing expat-2.5.0...
[131releng-armv7-quarterly-job-12] |   | `-- Extracting expat-2.5.0: .......... done
[131releng-armv7-quarterly-job-12] |   | `-- Installing freetype2-2.12.1_2...
[131releng-armv7-quarterly-job-12] |   |   `-- Installing brotli-1.0.9,1...
[131releng-armv7-quarterly-job-12] |   |   `-- Extracting brotli-1.0.9,1: .......... done
[131releng-armv7-quarterly-job-12] |   |   `-- Installing png-1.6.39...
[131releng-armv7-quarterly-job-12] |   |   `-- Extracting png-1.6.39: .......... done
[131releng-armv7-quarterly-job-12] |   | `-- Extracting freetype2-2.12.1_2: .......... done
[131releng-armv7-quarterly-job-12] |   `-- Extracting fontconfig-2.14.2,1: .......... done
<snip>
[131releng-armv7-quarterly-job-12] `-- Installing libXScrnSaver-1.2.4...
[131releng-armv7-quarterly-job-12] `-- Extracting libXScrnSaver-1.2.4: .......... done
[131releng-armv7-quarterly-job-12] `-- Installing libXmu-1.1.3,1...
[131releng-armv7-quarterly-job-12] `-- Extracting libXmu-1.1.3,1: .......... done
[131releng-armv7-quarterly-job-12] `-- Installing pango-1.50.9_1...
[131releng-armv7-quarterly-job-12] |   `-- Installing encodings-1.0.5,1...
[131releng-armv7-quarterly-job-12] |   `-- Extracting encodings-1.0.5,1: .......... done
[131releng-armv7-quarterly-job-12] |   `-- Installing fribidi-1.0.12...
[131releng-armv7-quarterly-job-12] |   `-- Extracting fribidi-1.0.12: .......... done
[131releng-armv7-quarterly-job-12] |   `-- Installing libXft-2.3.7...
[131releng-armv7-quarterly-job-12] |   `-- Extracting libXft-2.3.7: .......... done
[131releng-armv7-quarterly-job-12] |   `-- Installing libthai-0.1.29...
[131releng-armv7-quarterly-job-12] |   | `-- Installing libdatrie-0.2.13_1...
[131releng-armv7-quarterly-job-12] |   | `-- Extracting libdatrie-0.2.13_1: .......... done
[131releng-armv7-quarterly-job-12] |   `-- Extracting libthai-0.1.29: .......... done
[131releng-armv7-quarterly-job-12] |   `-- Installing xorg-fonts-truetype-7.7_1...
[131releng-armv7-quarterly-job-12] |   | `-- Installing font-bh-ttf-1.0.3_4...
[131releng-armv7-quarterly-job-12] |   | `-- Extracting font-bh-ttf-1.0.3_4: .......... done
[131releng-armv7-quarterly-job-12] |   | `-- Installing font-misc-ethiopic-1.0.4...
[131releng-armv7-quarterly-job-12] |   | `-- Extracting font-misc-ethiopic-1.0.4: ...... done
[131releng-armv7-quarterly-job-12] |   | `-- Installing font-misc-meltho-1.0.3_4...
[131releng-armv7-quarterly-job-12] |   | `-- Extracting font-misc-meltho-1.0.3_4: .......... done
[131releng-armv7-quarterly-job-12] |   `-- Extracting xorg-fonts-truetype-7.7_1: ... done
[131releng-armv7-quarterly-job-12] `-- Extracting pango-1.50.9_1: .......... done
[131releng-armv7-quarterly-job-12] `-- Installing tcl86-8.6.13...
[131releng-armv7-quarterly-job-12] `-- Extracting tcl86-8.6.13: .......... done
[131releng-armv7-quarterly-job-12] `-- Installing tk86-8.6.13...
[131releng-armv7-quarterly-job-12] `-- Extracting tk86-8.6.13: .......... done
[131releng-armv7-quarterly-job-12] Extracting R-4.2.3: .......... done
Running fc-cache to build fontconfig cache...
Generating GIO modules cache
Compiling glib schemas
No schema files found: doing nothing.
=====
Message from python39-3.9.16_2:

--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

py39-gdbm       databases/py-gdbm@py39
py39-sqlite3    databases/py-sqlite3@py39
py39-tkinter    x11-toolkits/py-tkinter@py39
=====
Message from ca_root_nss-3.89:

--
FreeBSD does not, and can not warrant that the certification authorities
whose certificates are included in this package have in any way been
audited for trustworthiness or RFC 3647 compliance.

Assessment and verification of trust is the complete responsibility of the
system administrator.


This package installs symlinks to support root certificates discovery by
default for software that uses OpenSSL.

This enables SSL Certificate Verification by client software without manual
intervention.

If you prefer to do this manually, replace the following symlinks with
either an empty file or your site-local certificate bundle.

  * /etc/ssl/cert.pem
  * /usr/local/etc/ssl/cert.pem
  * /usr/local/openssl/cert.pem
=====
Message from gcc12-12.2.0_5:

--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using

  -Wl,-rpath=/usr/local/lib/gcc12

For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
=====
Message from ghostscript9-agpl-base-9.56.1_8:

--
This package installs a script named dvipdf that depends on dvips.  If you
want to use this script you need to install print/tex-dvipsk.
=====
Message from libthai-0.1.29:

--
===>   NOTICE:

The libthai port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===>   R-cran-rJava-1.0.6_1 depends on file: /usr/local/bin/R - found
===>   Returning to build of R-cran-rJava-1.0.6_1
===>   R-cran-rJava-1.0.6_1 depends on executable: gfortran12 - found
===>   R-cran-rJava-1.0.6_1 depends on file: /usr/local/bin/as - found
===========================================================================
=======================<phase: lib-depends    >============================
===>   R-cran-rJava-1.0.6_1 depends on shared library: libicuuc.so - found (/usr/local/lib/libicuuc.so)
===>   R-cran-rJava-1.0.6_1 depends on shared library: libpcre2-8.so - found (/usr/local/lib/libpcre2-8.so)
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for R-cran-rJava-1.0.6_1
/usr/local/bin/R CMD javareconf -e exit
Java interpreter : /usr/local/bin/java
Java version     : 1.8.0_362
Java home path   : /usr/local/openjdk8/jre
Java compiler    : /usr/local/bin/javac
Java headers gen.: /usr/local/bin/javah
Java archive tool: /usr/local/bin/jar

trying to compile and link a JNI program 
detected JNI cpp flags    : -I$(JAVA_HOME)/../include -I$(JAVA_HOME)/../include/freebsd
detected JNI linker flags : -L$(JAVA_HOME)/lib/arm/server -ljvm -lpthread
gmake[1]: Entering directory '/tmp/Rjavareconf.13lq0o'
cc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/openjdk8/jre/../include -I/usr/local/openjdk8/jre/../include/freebsd  -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include   -fpic  -O2 -pipe  -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing   -c conftest.c -o conftest.o
cc -shared -L/usr/local/lib/R/lib -Wl,-rpath=/usr/local/lib/gcc12 -L/usr/local/lib/gcc12 -B/usr/local/bin -L/usr/local/lib -fstack-protector-strong -o conftest.so conftest.o -L/usr/local/openjdk8/jre/lib/arm/server -ljvm -lpthread -L/usr/local/lib/R/lib -lR
gmake[1]: Leaving directory '/tmp/Rjavareconf.13lq0o'

The following Java variables have been exported:
JAVA_HOME JAVA JAVAC JAVAH JAR JAVA_LIBS JAVA_CPPFLAGS JAVA_LD_LIBRARY_PATH
Running: exit
===========================================================================
=======================<phase: build          >============================
===========================================================================
=======================<phase: run-depends    >============================
===>   R-cran-rJava-1.0.6_1 depends on file: /usr/local/openjdk8/bin/java - found
===>   R-cran-rJava-1.0.6_1 depends on file: /usr/local/bin/R - found
===>   R-cran-rJava-1.0.6_1 depends on executable: gfortran12 - found
===========================================================================
=======================<phase: stage          >============================
===>  Staging for R-cran-rJava-1.0.6_1
===>   Generating temporary packing list
* installing *source* package 'rJava' ...
** package 'rJava' successfully unpacked and MD5 sums checked
** using staged installation
checking for gcc... cc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
checking how to run the C preprocessor... cpp
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/wait.h that is POSIX.1 compatible... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for string.h... (cached) yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for unistd.h... (cached) yes
checking for an ANSI C-conforming const... yes
checking whether time.h and sys/time.h may both be included... yes
configure: checking whether cc supports static inline...
yes
checking whether setjmp.h is POSIX.1 compatible... yes
checking whether sigsetjmp is declared... yes
checking whether siglongjmp is declared... yes
checking Java support in R... present:
interpreter : '/usr/local/openjdk8/bin/java'
archiver    : '/usr/local/openjdk8/bin/jar'
compiler    : '/usr/local/openjdk8/bin/javac'
header prep.: '/usr/local/openjdk8/bin/javah'
cpp flags   : '-I/usr/local/openjdk8/jre/../include -I/usr/local/openjdk8/jre/../include/freebsd'
java libs   : '-Wl,-rpath=/usr/local/openjdk8/jre/lib/armv7/server -L/usr/local/openjdk8/jre/lib/armv7/server -ljvm -lpthread'
checking whether Java run-time works... yes
checking whether -Xrs is supported... yes
checking whether -Xrs will be used... yes
checking whether JVM will be loaded dynamically... no
checking whether JNI programs can be compiled... configure: error: Cannot compile a simple JNI program. See config.log for details.

Make sure you have Java Development Kit installed and correctly registered in R.
If in doubt, re-run "R CMD javareconf" as root.

ERROR: configuration failed for package 'rJava'
* removing '/wrkdirs/usr/ports/devel/R-cran-rJava/work/stage/usr/local/lib/R/library/rJava'
*** Error code 1

Stop.
make: stopped in /usr/ports/devel/R-cran-rJava