[package - 131amd64-default][science/ocean] Failed for ocean-spectroscopy-code-3.0.0_1 in build
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Date: Wed, 26 Apr 2023 17:08:40 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy16/data/131amd64-default/519c178336e5/logs/ocean-spectroscopy-code-3.0.0_1.log
Build URL: https://pkg-status.freebsd.org/beefy16/build.html?mastername=131amd64-default&build=519c178336e5
Log:
=>> Building science/ocean
build started at Wed Apr 26 17:08:21 UTC 2023
port directory: /usr/ports/science/ocean
package name: ocean-spectroscopy-code-3.0.0_1
building for: FreeBSD 131amd64-default-job-13 13.1-RELEASE-p7 FreeBSD 13.1-RELEASE-p7 amd64
maintained by: yuri@FreeBSD.org
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---Begin OPTIONS List---
===> The following configuration options are available for ocean-spectroscopy-code-3.0.0_1:
====> MPI (Message Passing Interface) support: you have to select exactly one of them
MPICH=off: Parallel processing support via MPICH 3
OPENMPI=on: Parallel processing support via Open MPI
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
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=======================<phase: check-sanity >============================
===> License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> ocean-spectroscopy-code-3.0.0_1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.19.1_1.pkg
[131amd64-default-job-13] Installing pkg-1.19.1_1...
[131amd64-default-job-13] Extracting pkg-1.19.1_1: .......... done
===> ocean-spectroscopy-code-3.0.0_1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of ocean-spectroscopy-code-3.0.0_1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by ocean-spectroscopy-code-3.0.0_1 for building
===========================================================================
=======================<phase: checksum >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by ocean-spectroscopy-code-3.0.0_1 for building
=> SHA256 Checksum OK for times-software-OCEAN-v3.0.0_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by ocean-spectroscopy-code-3.0.0_1 for building
===> Extracting for ocean-spectroscopy-code-3.0.0_1
=> SHA256 Checksum OK for times-software-OCEAN-v3.0.0_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for ocean-spectroscopy-code-3.0.0_1
===> Applying FreeBSD patches for ocean-spectroscopy-code-3.0.0_1 from /usr/ports/science/ocean/files
===========================================================================
=======================<phase: build-depends >============================
===> ocean-spectroscopy-code-3.0.0_1 depends on executable: gfortran12 - not found
===> Installing existing package /packages/All/gcc12-12.2.0_6.pkg
[131amd64-default-job-13] Installing gcc12-12.2.0_6...
[131amd64-default-job-13] `-- Installing binutils-2.40_2,1...
[131amd64-default-job-13] | `-- Installing gettext-runtime-0.21.1...
[131amd64-default-job-13] | | `-- Installing indexinfo-0.3.1...
[131amd64-default-job-13] | | `-- Extracting indexinfo-0.3.1: .... done
[131amd64-default-job-13] | `-- Extracting gettext-runtime-0.21.1: .......... done
[131amd64-default-job-13] | `-- Installing zstd-1.5.4_2...
[131amd64-default-job-13] | | `-- Installing liblz4-1.9.4,1...
[131amd64-default-job-13] | | `-- Extracting liblz4-1.9.4,1: .......... done
[131amd64-default-job-13] | `-- Extracting zstd-1.5.4_2: .......... done
[131amd64-default-job-13] `-- Extracting binutils-2.40_2,1: .......... done
[131amd64-default-job-13] `-- Installing gmp-6.2.1...
[131amd64-default-job-13] `-- Extracting gmp-6.2.1: .......... done
[131amd64-default-job-13] `-- Installing mpc-1.3.1_1...
[131amd64-default-job-13] | `-- Installing mpfr-4.2.0,1...
[131amd64-default-job-13] | `-- Extracting mpfr-4.2.0,1: .......... done
[131amd64-default-job-13] `-- Extracting mpc-1.3.1_1: ......... done
[131amd64-default-job-13] Extracting gcc12-12.2.0_6: .......... done
=====
Message from gcc12-12.2.0_6:
--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc12
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
===> ocean-spectroscopy-code-3.0.0_1 depends on executable: gfortran12 - found
===> Returning to build of ocean-spectroscopy-code-3.0.0_1
===> ocean-spectroscopy-code-3.0.0_1 depends on package: gmake>=4.3 - not found
===> Installing existing package /packages/All/gmake-4.3_2.pkg
[131amd64-default-job-13] Installing gmake-4.3_2...
[131amd64-default-job-13] Extracting gmake-4.3_2: .......... done
===> ocean-spectroscopy-code-3.0.0_1 depends on package: gmake>=4.3 - found
===> Returning to build of ocean-spectroscopy-code-3.0.0_1
===> ocean-spectroscopy-code-3.0.0_1 depends on file: /usr/local/bin/as - found
===========================================================================
=======================<phase: lib-depends >============================
===> ocean-spectroscopy-code-3.0.0_1 depends on shared library: libfftw3.so - not found
===> Installing existing package /packages/All/fftw3-3.3.10_2.pkg
[131amd64-default-job-13] Installing fftw3-3.3.10_2...
[131amd64-default-job-13] Extracting fftw3-3.3.10_2: .......... done
===> ocean-spectroscopy-code-3.0.0_1 depends on shared library: libfftw3.so - found (/usr/local/lib/libfftw3.so)
===> Returning to build of ocean-spectroscopy-code-3.0.0_1
===> ocean-spectroscopy-code-3.0.0_1 depends on shared library: libopenblas.so - not found
===> Installing existing package /packages/All/openblas-0.3.20_1,1.pkg
[131amd64-default-job-13] Installing openblas-0.3.20_1,1...
[131amd64-default-job-13] Extracting openblas-0.3.20_1,1: .......... done
===> ocean-spectroscopy-code-3.0.0_1 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so)
===> Returning to build of ocean-spectroscopy-code-3.0.0_1
===> ocean-spectroscopy-code-3.0.0_1 depends on shared library: libmpi_cxx.so - not found
===> Installing existing package /packages/All/openmpi-4.1.5_1.pkg
[131amd64-default-job-13] Installing openmpi-4.1.5_1...
[131amd64-default-job-13] `-- Installing hwloc2-2.8.0...
[131amd64-default-job-13] | `-- Installing level-zero-1.10.0...
[131amd64-default-job-13] | `-- Extracting level-zero-1.10.0: .......... done
[131amd64-default-job-13] | `-- Installing libpciaccess-0.17...
[131amd64-default-job-13] | `-- Extracting libpciaccess-0.17: ........ done
[131amd64-default-job-13] | `-- Installing libxml2-2.10.3_2...
[131amd64-default-job-13] | | `-- Installing readline-8.2.1...
[131amd64-default-job-13] | | `-- Extracting readline-8.2.1: .......... done
[131amd64-default-job-13] | `-- Extracting libxml2-2.10.3_2: .......... done
[131amd64-default-job-13] `-- Extracting hwloc2-2.8.0: .......... done
[131amd64-default-job-13] `-- Installing libevent-2.1.12...
[131amd64-default-job-13] `-- Extracting libevent-2.1.12: .......... done
[131amd64-default-job-13] `-- Installing libltdl-2.4.7...
[131amd64-default-job-13] `-- Extracting libltdl-2.4.7: .......... done
[131amd64-default-job-13] `-- Installing munge-0.5.15...
[131amd64-default-job-13] | `-- Installing libgcrypt-1.9.4_1...
[131amd64-default-job-13] | | `-- Installing libgpg-error-1.47...
[131amd64-default-job-13] | | `-- Extracting libgpg-error-1.47: .......... done
[131amd64-default-job-13] | `-- Extracting libgcrypt-1.9.4_1: .......... done
[131amd64-default-job-13] `-- Extracting munge-0.5.15: ......... done
[131amd64-default-job-13] `-- Installing slurm-wlm-20.02.7_3...
[131amd64-default-job-13] | `-- Installing hdf5-1.12.2_2,1...
[131amd64-default-job-13] | | `-- Installing libaec-1.0.6...
[131amd64-default-job-13] | | `-- Extracting libaec-1.0.6: .......... done
[131amd64-default-job-13] | `-- Extracting hdf5-1.12.2_2,1: .......... done
[131amd64-default-job-13] | `-- Installing json-c-0.16...
[131amd64-default-job-13] | `-- Extracting json-c-0.16: .......... done
[131amd64-default-job-13] | `-- Installing libsysinfo-0.0.3_2...
[131amd64-default-job-13] | `-- Extracting libsysinfo-0.0.3_2: ......... done
[131amd64-default-job-13] | `-- Installing lua54-5.4.4...
[131amd64-default-job-13] | | `-- Installing libedit-3.1.20221030,1...
[131amd64-default-job-13] | | `-- Extracting libedit-3.1.20221030,1: .......... done
[131amd64-default-job-13] | `-- Extracting lua54-5.4.4: .......... done
===> Creating groups.
Creating group 'slurm' with gid '468'.
===> Creating users
Creating user 'slurm' with uid '468'.
[131amd64-default-job-13] `-- Extracting slurm-wlm-20.02.7_3: .......... done
[131amd64-default-job-13] Extracting openmpi-4.1.5_1: .......... done
=====
Message from slurm-wlm-20.02.7_3:
--
===> NOTICE:
The slurm-wlm port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
=====
Message from openmpi-4.1.5_1:
--
===> NOTICE:
The openmpi port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===> ocean-spectroscopy-code-3.0.0_1 depends on shared library: libmpi_cxx.so - found (/usr/local/mpi/openmpi/lib/libmpi_cxx.so)
===> Returning to build of ocean-spectroscopy-code-3.0.0_1
===========================================================================
=======================<phase: configure >============================
===> Configuring for ocean-spectroscopy-code-3.0.0_1
===========================================================================
=======================<phase: build >============================
===> Building for ocean-spectroscopy-code-3.0.0_1
gmake[1]: Entering directory '/wrkdirs/usr/ports/science/ocean/work/OCEAN-3.0.0'
perl append_git.pl
gmake[1]: perl: No such file or directory
gmake[1]: *** [Makefile:12: all] Error 127
gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/ocean/work/OCEAN-3.0.0'
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/science/ocean