[package - main-powerpc64le-default][biology/ncbi-toolkit] Failed for ncbi-toolkit-2017.01.06_7 in build
- Go to: [ bottom of page ] [ top of archives ] [ this month ]
Date: Wed, 26 Apr 2023 12:54:33 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/foul2/data/main-powerpc64le-default/pa9e3eeda87a7_sb754d7faaf/logs/ncbi-toolkit-2017.01.06_7.log
Build URL: https://pkg-status.freebsd.org/foul2/build.html?mastername=main-powerpc64le-default&build=pa9e3eeda87a7_sb754d7faaf
Log:
=>> Building biology/ncbi-toolkit
build started at Wed Apr 26 12:41:23 UTC 2023
port directory: /usr/ports/biology/ncbi-toolkit
package name: ncbi-toolkit-2017.01.06_7
building for: FreeBSD main-powerpc64le-default-job-16 14.0-CURRENT FreeBSD 14.0-CURRENT 1400082 powerpc
maintained by: yuri@FreeBSD.org
Makefile ident:
Poudriere version: 3.2.8-23-ga7f8d188
Host OSVERSION: 1400073
Jail OSVERSION: 1400082
Job Id: 16
!!! Jail is newer than host. (Jail: 1400082, Host: 1400073) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
---Begin Environment---
SHELL=/bin/sh
OSVERSION=1400082
UNAME_v=FreeBSD 14.0-CURRENT 1400082
UNAME_r=14.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-23-ga7f8d188
MASTERMNT=/usr/local/poudriere/data/.m/main-powerpc64le-default/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/main-powerpc64le-default/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=main-powerpc64le-default
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/main-powerpc64le-default/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for ncbi-toolkit-2017.01.06_7:
DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ncbi-toolkit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ncbi-toolkit/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/ncbi-toolkit/work/.cache HOME=/wrkdirs/usr/ports/biology/ncbi-toolkit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ncbi-toolkit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/ncbi-toolkit/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
MOTIFLIB="-L/usr/local/lib -lXm" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ncbi-toolkit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ncbi-toolkit/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/ncbi-toolkit/work/.cache HOME=/wrkdirs/usr/ports/biology/ncbi-toolkit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ncbi-toolkit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/ncbi-toolkit/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-DLIBICONV_PLUG" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -DLIBICONV_PLUG " MANPREFIX="/usr/local" BSD_INSTALL_PRO
GRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
PORTDOCS="" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/ncbi-toolkit" EXAMPLESDIR="share/examples/ncbi-toolkit" DATADIR="share/ncbi-toolkit" WWWDIR="www/ncbi-toolkit" ETCDIR="etc/ncbi-toolkit"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ncbi-toolkit DOCSDIR=/usr/local/share/doc/ncbi-toolkit EXAMPLESDIR=/usr/local/share/examples/ncbi-toolkit WWWDIR=/usr/local/www/ncbi-toolkit ETCDIR=/usr/local/etc/ncbi-toolkit
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=FreeBSD clang version 15.0.7 (https://github.com/llvm/llvm-project.git llvmorg-15.0.7-0-g8dfdcc7b7bf6) Target: powerpc64le-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin
_ALTCCVERSION_921dbbb2=none
_CXXINTERNAL_acaad9ca=FreeBSD clang version 15.0.7 (https://github.com/llvm/llvm-project.git llvmorg-15.0.7-0-g8dfdcc7b7bf6) Target: powerpc64le-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=yes
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=yes
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=yes
CC_OUTPUT_921dbbb2_f00456e5=yes
CC_OUTPUT_921dbbb2_65ad290d=yes
CC_OUTPUT_921dbbb2_f2776b26=yes
CC_OUTPUT_921dbbb2_53255a77=yes
CC_OUTPUT_921dbbb2_911cfe02=yes
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=yes
CC_OUTPUT_921dbbb2_160933ec=yes
CC_OUTPUT_921dbbb2_fb62803b=yes
CC_OUTPUT_921dbbb2_af59ad06=yes
CC_OUTPUT_921dbbb2_a15f3fcf=yes
_OBJC_CCVERSION_921dbbb2=FreeBSD clang version 15.0.7 (https://github.com/llvm/llvm-project.git llvmorg-15.0.7-0-g8dfdcc7b7bf6) Target: powerpc64le-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin
_OBJC_ALTCCVERSION_921dbbb2=none
ARCH=powerpc64le
OPSYS=FreeBSD
_OSRELEASE=14.0-CURRENT
OSREL=14.0
OSVERSION=1400082
PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=524288
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 33554432
stack size (kbytes, -s) 524288
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 1024
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===========================================================================
=======================<phase: pkg-depends >============================
===> ncbi-toolkit-2017.01.06_7 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.19.1_1.pkg
[main-powerpc64le-default-job-16] Installing pkg-1.19.1_1...
[main-powerpc64le-default-job-16] Extracting pkg-1.19.1_1: .......... done
===> ncbi-toolkit-2017.01.06_7 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of ncbi-toolkit-2017.01.06_7
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> Fetching all distfiles required by ncbi-toolkit-2017.01.06_7 for building
===========================================================================
=======================<phase: checksum >============================
===> Fetching all distfiles required by ncbi-toolkit-2017.01.06_7 for building
=> SHA256 Checksum OK for ncbi-toolkit-2017.01.06/ncbi.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> Fetching all distfiles required by ncbi-toolkit-2017.01.06_7 for building
===> Extracting for ncbi-toolkit-2017.01.06_7
=> SHA256 Checksum OK for ncbi-toolkit-2017.01.06/ncbi.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for ncbi-toolkit-2017.01.06_7
===> Applying FreeBSD patches for ncbi-toolkit-2017.01.06_7 from /usr/ports/biology/ncbi-toolkit/files
===========================================================================
=======================<phase: build-depends >============================
===> ncbi-toolkit-2017.01.06_7 depends on file: /usr/local/libdata/pkgconfig/x11.pc - not found
===> Installing existing package /packages/All/libX11-1.7.2,1.pkg
[main-powerpc64le-default-job-16] Installing libX11-1.7.2,1...
[main-powerpc64le-default-job-16] `-- Installing libxcb-1.15_1...
[main-powerpc64le-default-job-16] | `-- Installing libXau-1.0.9...
[main-powerpc64le-default-job-16] | `-- Extracting libXau-1.0.9: .......... done
<snip>
sqnutil4.c:7308:53: warning: expression which evaluates to zero treated as a null pointer constant of type 'DeflineFeatureRequestListPtr' (aka 'struct deflinefeaturerequestlist *') [-Wnon-literal-null-conversion]
expected_product_name = GetProductName (cds, bsp, FALSE);
^~~~~
./include/ncbistd.h:247:15: note: expanded from macro 'FALSE'
#define FALSE ((Nlm_Boolean)0)
^~~~~~~~~~~~~~~~
sqnutil4.c:10750:37: warning: expression which evaluates to zero treated as a null pointer constant of type 'ValNodePtr' (aka 'struct valnode *') [-Wnon-literal-null-conversion]
if (new_fcp == NULL) return FALSE;
^~~~~
./include/ncbistd.h:247:15: note: expanded from macro 'FALSE'
#define FALSE ((Nlm_Boolean)0)
^~~~~~~~~~~~~~~~
sqnutil4.c:10752:33: warning: expression which evaluates to zero treated as a null pointer constant of type 'ValNodePtr' (aka 'struct valnode *') [-Wnon-literal-null-conversion]
if (vnp == NULL) return FALSE;
^~~~~
./include/ncbistd.h:247:15: note: expanded from macro 'FALSE'
#define FALSE ((Nlm_Boolean)0)
^~~~~~~~~~~~~~~~
sqnutil4.c:20501:34: warning: result of comparison of constant -1 with expression of type 'char' is always true [-Wtautological-constant-out-of-range-compare]
while (line != NULL && line[0] != EOF) {
~~~~~~~ ^ ~~~
sqnutil4.c:20579:34: warning: result of comparison of constant -1 with expression of type 'char' is always true [-Wtautological-constant-out-of-range-compare]
while (line != NULL && line[0] != EOF) {
~~~~~~~ ^ ~~~
sqnutil4.c:27751:27: warning: expression which evaluates to zero treated as a null pointer constant of type 'ValNodePtr' (aka 'struct valnode *') [-Wnon-literal-null-conversion]
if (sdp == NULL) return FALSE;
^~~~~
./include/ncbistd.h:247:15: note: expanded from macro 'FALSE'
#define FALSE ((Nlm_Boolean)0)
^~~~~~~~~~~~~~~~
sqnutil4.c:27753:27: warning: expression which evaluates to zero treated as a null pointer constant of type 'ValNodePtr' (aka 'struct valnode *') [-Wnon-literal-null-conversion]
if (pdp == NULL) return FALSE;
^~~~~
./include/ncbistd.h:247:15: note: expanded from macro 'FALSE'
#define FALSE ((Nlm_Boolean)0)
^~~~~~~~~~~~~~~~
sqnutil4.c:28869:32: warning: result of comparison of constant -1 with expression of type 'char' is always true [-Wtautological-constant-out-of-range-compare]
while (*val <= 256 && *val >= -1 && isspace (*val)) {
~~~~ ^ ~~
sqnutil4.c:28869:17: warning: result of comparison of constant 256 with expression of type 'char' is always true [-Wtautological-constant-out-of-range-compare]
while (*val <= 256 && *val >= -1 && isspace (*val)) {
~~~~ ^ ~~~
sqnutil4.c:28920:34: warning: result of comparison of constant -1 with expression of type 'char' is always true [-Wtautological-constant-out-of-range-compare]
while (line != NULL && line[0] != EOF) {
~~~~~~~ ^ ~~~
sqnutil4.c:28931:50: warning: result of comparison of constant -1 with expression of type 'char' is always true [-Wtautological-constant-out-of-range-compare]
while (last > val && *last <= 256 && *last >= -1 && isspace (*last)) {
~~~~~ ^ ~~
sqnutil4.c:28931:34: warning: result of comparison of constant 256 with expression of type 'char' is always true [-Wtautological-constant-out-of-range-compare]
while (last > val && *last <= 256 && *last >= -1 && isspace (*last)) {
~~~~~ ^ ~~~
12 warnings generated.
cc -DNDEBUG -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF subutil.c
cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument]
subutil.c:774:41: warning: expression which evaluates to zero treated as a null pointer constant of type 'SeqLitPtr' (aka 'struct seqlit *') [-Wnon-literal-null-conversion]
if (delta_seq_entry == NULL) return FALSE;
^~~~~
./include/ncbistd.h:247:15: note: expanded from macro 'FALSE'
#define FALSE ((Nlm_Boolean)0)
^~~~~~~~~~~~~~~~
subutil.c:775:48: warning: expression which evaluates to zero treated as a null pointer constant of type 'SeqLitPtr' (aka 'struct seqlit *') [-Wnon-literal-null-conversion]
if (IS_Bioseq_set(delta_seq_entry)) return FALSE;
^~~~~
./include/ncbistd.h:247:15: note: expanded from macro 'FALSE'
#define FALSE ((Nlm_Boolean)0)
^~~~~~~~~~~~~~~~
subutil.c:776:56: warning: expression which evaluates to zero treated as a null pointer constant of type 'SeqLitPtr' (aka 'struct seqlit *') [-Wnon-literal-null-conversion]
if (delta_seq_entry->data.ptrvalue == NULL) return FALSE;
^~~~~
./include/ncbistd.h:247:15: note: expanded from macro 'FALSE'
#define FALSE ((Nlm_Boolean)0)
^~~~~~~~~~~~~~~~
subutil.c:782:16: warning: expression which evaluates to zero treated as a null pointer constant of type 'SeqLitPtr' (aka 'struct seqlit *') [-Wnon-literal-null-conversion]
return FALSE;
^~~~~
./include/ncbistd.h:247:15: note: expanded from macro 'FALSE'
#define FALSE ((Nlm_Boolean)0)
^~~~~~~~~~~~~~~~
subutil.c:3639:32: warning: comparing a pointer to a null character constant; did you mean to compare to NULL? [-Wpointer-compare]
if (AA_for_tRNA != '\0')
^~~~
(void *)0
subutil.c:4050:16: warning: expression which evaluates to zero treated as a null pointer constant of type 'SeqGraphPtr' (aka 'struct seqgraph *') [-Wnon-literal-null-conversion]
return FALSE;
^~~~~
./include/ncbistd.h:247:15: note: expanded from macro 'FALSE'
#define FALSE ((Nlm_Boolean)0)
^~~~~~~~~~~~~~~~
6 warnings generated.
cc -DNDEBUG -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF edutil.c
cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument]
edutil.c:2062:48: warning: expression which evaluates to zero treated as a null pointer constant of type 'BioseqPtr' (aka 'struct bioseq *') [-Wnon-literal-null-conversion]
if ((oldbsp == NULL) || (from < 0)) return FALSE;
^~~~~
./include/ncbistd.h:247:15: note: expanded from macro 'FALSE'
#define FALSE ((Nlm_Boolean)0)
^~~~~~~~~~~~~~~~
edutil.c:2203:50: warning: expression which evaluates to zero treated as a null pointer constant of type 'BioseqPtr' (aka 'struct bioseq *') [-Wnon-literal-null-conversion]
if ((sourceid == NULL) || (from < 0)) return FALSE;
^~~~~
./include/ncbistd.h:247:15: note: expanded from macro 'FALSE'
#define FALSE ((Nlm_Boolean)0)
^~~~~~~~~~~~~~~~
2 warnings generated.
cc -DNDEBUG -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asn2ff1.c
cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument]
cc -DNDEBUG -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asn2ff2.c
cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument]
asn2ff2.c:1358:8: warning: type specifier missing, defaults to 'int'; ISO C99 and later do not support implicit int [-Wimplicit-int]
static ChoicePID(SeqIdPtr sid)
~~~~~~ ^
int
1 warning generated.
cc -DNDEBUG -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asn2ff3.c
cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument]
asn2ff3.c:2717:28: warning: format specifies type 'char *' but the argument has type 'Nlm_VoidPtr' (aka 'void *') [-Wformat]
sprintf(val, "GeneID:%s", vnp->data.ptrvalue);
~~ ^~~~~~~~~~~~~~~~~~
1 warning generated.
cc -DNDEBUG -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asn2ff4.c
cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument]
asn2ff4.c:1126:5: warning: add explicit braces to avoid dangling else [-Wdangling-else]
}else{
^
asn2ff4.c:1347:8: warning: type specifier missing, defaults to 'int'; ISO C99 and later do not support implicit int [-Wimplicit-int]
static CmpImpFeat (ImpFeatPtr f1, ImpFeatPtr f2)
~~~~~~ ^
int
asn2ff4.c:2069:26: warning: comparison of array 'gbp->accession' equal to a null pointer is always false [-Wtautological-pointer-compare]
if (gbp == NULL || gbp->accession == NULL)
~~~~~^~~~~~~~~ ~~~~
asn2ff4.c:2660:12: warning: address of array 'gbp->locus' will always evaluate to 'true' [-Wpointer-bool-conversion]
if (gbp->locus) {
~~ ~~~~~^~~~~
asn2ff4.c:2664:12: warning: address of array 'gbp->accession' will always evaluate to 'true' [-Wpointer-bool-conversion]
if (gbp->accession) {
~~ ~~~~~^~~~~~~~~
5 warnings generated.
cc -DNDEBUG -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asn2ff5.c
cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument]
asn2ff5.c:1683:5: warning: add explicit braces to avoid dangling else [-Wdangling-else]
else
^
asn2ff5.c:2128:10: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_CharPtr' (aka 'char *') [-Wnon-literal-null-conversion]
temp = '\0';
^~~~
asn2ff5.c:2124:12: warning: expression result unused [-Wunused-value]
temp++; *ptr_in++;
^~~~~~~~~
3 warnings generated.
cc -DNDEBUG -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asn2ff6.c
cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument]
cc -DNDEBUG -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asn2gnb1.c
cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument]
cc -DNDEBUG -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asn2gnb2.c
cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument]
asn2gnb2.c:1742:18: warning: comparing a pointer to a null character constant; did you mean to compare to NULL? [-Wpointer-compare]
while (accp != '\0' && prevp != '\0') {
^~~~
(void *)0
asn2gnb2.c:1742:37: warning: comparing a pointer to a null character constant; did you mean to compare to NULL? [-Wpointer-compare]
while (accp != '\0' && prevp != '\0') {
^~~~
(void *)0
asn2gnb2.c:1767:41: warning: comparing a pointer to a null character constant; did you mean to compare to NULL? [-Wpointer-compare]
for (ptr = acc, letters = 0; ptr != '\0' && IS_ALPHA(*ptr); ++ptr, ++letters) continue;
^~~~
(void *)0
asn2gnb2.c:3409:14: warning: call to undeclared function 'PrintDate'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
string = PrintDate (spb->created);
^
asn2gnb2.c:3409:12: error: incompatible integer to pointer conversion assigning to 'Nlm_CharPtr' (aka 'char *') from 'int' [-Wint-conversion]
string = PrintDate (spb->created);
^ ~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb2.c:3417:14: warning: call to undeclared function 'PrintDate'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
string = PrintDate (spb->sequpd);
^
asn2gnb2.c:3417:12: error: incompatible integer to pointer conversion assigning to 'Nlm_CharPtr' (aka 'char *') from 'int' [-Wint-conversion]
string = PrintDate (spb->sequpd);
^ ~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb2.c:3424:14: warning: call to undeclared function 'PrintDate'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
string = PrintDate (spb->annotupd);
^
asn2gnb2.c:3424:12: error: incompatible integer to pointer conversion assigning to 'Nlm_CharPtr' (aka 'char *') from 'int' [-Wint-conversion]
string = PrintDate (spb->annotupd);
^ ~~~~~~~~~~~~~~~~~~~~~~~~~
6 warnings and 3 errors generated.
*** Error code 1
Stop.
make[1]: stopped in /wrkdirs/usr/ports/biology/ncbi-toolkit/work/ncbi/build
Fatal error building NCBI core libraries.
Please be sure that you have X11 and Motif libraries installed.
The NCBI toolkit FAQ at ftp://ftp.ncbi.nih.gov/toolbox/FAQ.html may be helpful.
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/ncbi-toolkit