From nobody Mon Apr 24 23:37:01 2023 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4Q51kP6wy7z462Lt for ; Mon, 24 Apr 2023 23:37:01 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4Q51kP4s3tz46Zb for ; Mon, 24 Apr 2023 23:37:01 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1682379421; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc; bh=we1huTixSuzKFs63w+LHedqO73TXSSmtPUx/5Y+aI9U=; b=jSxmjs3hgbeBOlNHBR0s45XHFlRm+EhiNZXfp9CAAdB478O78zqChyZPbbNW3/rhiP/c0D cMGHIxA0+G2SP6yQBR5g8I5++axdO4muCPp0CSD1PVXvShJF38ul/g0ShI5qezYOw8qeAi MihU0rrR9j9YLnNo0as+4fx0G+bvsE4bbbWhsneL6w8xsNM+ICNIu2bXlE2nJIVig7qXs+ wE6Vh2t4otTdhRBRKD+rSTPX00eVz93Q9xMPyJxxeY7H1MDRRr6mGwiwUuCs0FpXhwQMI9 wD7+PdbSohgXriFY9Zrk3CPa2VwYSGCzjKO+fFQ112sMBVzb3ymnXBsCThulDg== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1682379421; a=rsa-sha256; cv=none; b=eD9pigWwmLWWks6JjAZYxQ0ijQfvfK1RYz0bEsoA+MxIjDquThpDs8DWpo+PFjGCC8jUpk N+Qcl7ePkTBFbE82bXY0juJf77U9rSCuG0JHlg6IYqTiLiijf5mBshBPjhubfPZ47h8h1r HDGwY76JO+ZFKm+U0m/tQIbsWsidVqb84MqZN0NhJeUKgMepM6kGRIyqOFEzoVi4ms6m/2 8DhuUn0+an2yWC1eUFdb5kG/K8UTe8UBZNmGQmjC3z19hbS5Qg1MNGgLgS7+SDaicVTR7a 5C29lX+55BkBGzUaVAcm4QjcxGYylOBPDNQwTwkqO6BX/syTvUns3pqhRoTbcw== Received: from ampere3.nyi.freebsd.org (ampere3.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:26]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4Q51kP3yChzkrh for ; Mon, 24 Apr 2023 23:37:01 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from ampere3.nyi.freebsd.org (localhost [127.0.0.1]) by ampere3.nyi.freebsd.org (8.16.1/8.16.1) with ESMTP id 33ONb1pL097372 for ; Mon, 24 Apr 2023 23:37:01 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by ampere3.nyi.freebsd.org (8.16.1/8.16.1/Submit) id 33ONb1bN097355; Mon, 24 Apr 2023 23:37:01 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Mon, 24 Apr 2023 23:37:01 GMT From: pkg-fallout@FreeBSD.org Message-Id: <202304242337.33ONb1bN097355@ampere3.nyi.freebsd.org> To: pkg-fallout@FreeBSD.org Subject: [package - 131releng-armv7-default][biology/metaeuk] Failed for metaeuk-6_1 in configure X-ThisMailContainsUnwantedMimeParts: N List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: https://pkg-status.freebsd.org/ampere3/data/131releng-armv7-default/c43292c24918/logs/metaeuk-6_1.log Build URL: https://pkg-status.freebsd.org/ampere3/build.html?mastername=131releng-armv7-default&build=c43292c24918 Log: =>> Building biology/metaeuk build started at Mon Apr 24 23:36:41 UTC 2023 port directory: /usr/ports/biology/metaeuk package name: metaeuk-6_1 building for: FreeBSD 131releng-armv7-default-job-11 13.1-RELEASE-p7 FreeBSD 13.1-RELEASE-p7 1301000 arm maintained by: yuri@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-23-ga7f8d188 Host OSVERSION: 1400073 Jail OSVERSION: 1301000 Job Id: 11 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1301000 UNAME_v=FreeBSD 13.1-RELEASE-p7 1301000 UNAME_r=13.1-RELEASE-p7 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-23-ga7f8d188 MASTERMNT=/usr/local/poudriere/data/.m/131releng-armv7-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/131releng-armv7-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=131releng-armv7-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/131releng-armv7-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/metaeuk/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/metaeuk/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/metaeuk/work/.cache HOME=/wrkdirs/usr/ports/biology/metaeuk/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/metaeuk/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/metaeuk/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/metaeuk/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/metaeuk/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/metaeuk/work/.cache HOME=/wrkdirs/usr/ports/biology/metaeuk/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/metaeuk/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/metaeuk/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/metaeuk/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 55 5" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" OSREL=13.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.32.1 PERL_VER=5.32 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.32 DOCSDIR="share/doc/metaeuk" EXAMPLESDIR="share/examples/metaeuk" DATADIR="share/metaeuk" WWWDIR="www/metaeuk" ETCDIR="etc/metaeuk" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/metaeuk DOCSDIR=/usr/local/share/doc/metaeuk EXAMPLESDIR=/usr/local/share/examples/metaeuk WWWDIR=/usr/local/www/metaeuk ETCDIR=/usr/local/etc/metaeuk --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: armv7-unknown-freebsd13.1-gnueabihf Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: armv7-unknown-freebsd13.1-gnueabihf Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_53255a77=yes CC_OUTPUT_921dbbb2_911cfe02=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes CC_OUTPUT_921dbbb2_af59ad06=yes CC_OUTPUT_921dbbb2_a15f3fcf=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: armv7-unknown-freebsd13.1-gnueabihf Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=armv7 OPSYS=FreeBSD _OSRELEASE=13.1-RELEASE-p7 OSREL=13.1 OSVERSION=1301000 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 1048576 stack size (kbytes, -s) 1048576 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License GPLv3 accepted by the user =========================================================================== =================================================== ===> metaeuk-6_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.19.1_1.pkg [131releng-armv7-default-job-11] Installing pkg-1.19.1_1... [131releng-armv7-default-job-11] Extracting pkg-1.19.1_1: .......... done ===> metaeuk-6_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of metaeuk-6_1 =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by metaeuk-6_1 for building =========================================================================== =================================================== ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by metaeuk-6_1 for building => SHA256 Checksum OK for soedinglab-metaeuk-6-a5d39d9_GH0.tar.gz. => SHA256 Checksum OK for soedinglab-metaeuk-regression-6404519_GH0.tar.gz. => SHA256 Checksum OK for soedinglab-MMseqs2-Regression-f69b185_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by metaeuk-6_1 for building ===> Extracting for metaeuk-6_1 => SHA256 Checksum OK for soedinglab-metaeuk-6-a5d39d9_GH0.tar.gz. => SHA256 Checksum OK for soedinglab-metaeuk-regression-6404519_GH0.tar.gz. => SHA256 Checksum OK for soedinglab-MMseqs2-Regression-f69b185_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for metaeuk-6_1 =========================================================================== =================================================== ===> metaeuk-6_1 depends on executable: xxd - not found ===> Installing existing package /packages/All/vim-9.0.1441.pkg [131releng-armv7-default-job-11] Installing vim-9.0.1441... [131releng-armv7-default-job-11] `-- Installing gettext-runtime-0.21.1... [131releng-armv7-default-job-11] | `-- Installing indexinfo-0.3.1... [131releng-armv7-default-job-11] | `-- Extracting indexinfo-0.3.1: .... done [131releng-armv7-default-job-11] `-- Extracting gettext-runtime-0.21.1: .......... done [131releng-armv7-default-job-11] `-- Installing python39-3.9.16_2... [131releng-armv7-default-job-11] | `-- Installing libffi-3.4.4... [131releng-armv7-default-job-11] | `-- Extracting libffi-3.4.4: .......... done [131releng-armv7-default-job-11] | `-- Installing mpdecimal-2.5.1... [131releng-armv7-default-job-11] | `-- Extracting mpdecimal-2.5.1: .......... done [131releng-armv7-default-job-11] | `-- Installing readline-8.2.1... [131releng-armv7-default-job-11] | `-- Extracting readline-8.2.1: .......... done [131releng-armv7-default-job-11] `-- Extracting python39-3.9.16_2: .......... done [131releng-armv7-default-job-11] Extracting vim-9.0.1441: .......... done ===== Message from python39-3.9.16_2: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 ===> metaeuk-6_1 depends on executable: xxd - found ===> Returning to build of metaeuk-6_1 ===> metaeuk-6_1 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.26.1.pkg [131releng-armv7-default-job-11] Installing cmake-core-3.26.1... [131releng-armv7-default-job-11] `-- Installing expat-2.5.0... [131releng-armv7-default-job-11] `-- Extracting expat-2.5.0: .......... done [131releng-armv7-default-job-11] `-- Installing jsoncpp-1.9.5... [131releng-armv7-default-job-11] `-- Extracting jsoncpp-1.9.5: .......... done [131releng-armv7-default-job-11] `-- Installing libuv-1.44.2... [131releng-armv7-default-job-11] `-- Extracting libuv-1.44.2: .......... done [131releng-armv7-default-job-11] `-- Installing rhash-1.4.3... [131releng-armv7-default-job-11] `-- Extracting rhash-1.4.3: .......... done [131releng-armv7-default-job-11] Extracting cmake-core-3.26.1: .......... done ===> metaeuk-6_1 depends on file: /usr/local/bin/cmake - found ===> Returning to build of metaeuk-6_1 ===> metaeuk-6_1 depends on executable: ninja - not found ===> Installing existing package /packages/All/ninja-1.11.1,2.pkg [131releng-armv7-default-job-11] Installing ninja-1.11.1,2... [131releng-armv7-default-job-11] Extracting ninja-1.11.1,2: ........ done ===> metaeuk-6_1 depends on executable: ninja - found ===> Returning to build of metaeuk-6_1 ===> metaeuk-6_1 depends on package: perl5>=5.32.r0<5.33 - not found ===> Installing existing package /packages/All/perl5-5.32.1_3.pkg [131releng-armv7-default-job-11] Installing perl5-5.32.1_3... [131releng-armv7-default-job-11] Extracting perl5-5.32.1_3: .......... done ===> metaeuk-6_1 depends on package: perl5>=5.32.r0<5.33 - found ===> Returning to build of metaeuk-6_1 =========================================================================== =================================================== =========================================================================== =================================================== ===> Configuring for metaeuk-6_1 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/biology/metaeuk/work/.build -- The CXX compiler identification is Clang 13.0.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- The C compiler identification is Clang 13.0.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Source Directory: /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs -- Project Directory: /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs -- Compiler is clang(++) -- ZSTD VERSION 1.3.8 -- ShellCheck disabled -- Performing Test HAVE_POSIX_FADVISE -- Performing Test HAVE_POSIX_FADVISE - Success -- Performing Test HAVE_POSIX_MADVISE -- Performing Test HAVE_POSIX_MADVISE - Success -- Performing Test ATOMIC_LIBRARY_NATIVE -- Performing Test ATOMIC_LIBRARY_NATIVE - Failed -- Performing Test ATOMIC_LIBRARY_LIB -- Performing Test ATOMIC_LIBRARY_LIB - Failed -- Could NOT find Atomic (missing: ATOMIC_LIBRARY) -- OMPTL sorting fallback -- Found ZLIB -- Performing Test HAVE_ZLIB_CHECK -- Performing Test HAVE_ZLIB_CHECK - Success -- ZLIB works -- Found BZLIB -- Performing Test HAVE_BZLIB_CHECK -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works CMake Error at /wrkdirs/usr/ports/biology/metaeuk/work/.build/CMakeFiles/CMakeTmp/CMakeLists.txt:15 (add_executable): No SOURCES given to target: cmTC_c8a4e CMake Error at /usr/local/share/cmake/Modules/FindOpenMP.cmake:266 (try_compile): Failed to generate test project build system. Call Stack (most recent call first): /usr/local/share/cmake/Modules/FindOpenMP.cmake:534 (_OPENMP_GET_FLAGS) lib/mmseqs/src/CMakeLists.txt:215 (find_package) -- Configuring incomplete, errors occurred! *** Error code 1 Stop. make: stopped in /usr/ports/biology/metaeuk