[package - main-powerpc64le-default][biology/wise] Failed for wise-2.4.1_1 in build

From: <pkg-fallout_at_FreeBSD.org>
Date: Wed, 19 Apr 2023 20:17:36 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     ports@FreeBSD.org
Log URL:        https://pkg-status.freebsd.org/foul2/data/main-powerpc64le-default/p3034bd2d70e6_sb754d7faaf/logs/wise-2.4.1_1.log
Build URL:      https://pkg-status.freebsd.org/foul2/build.html?mastername=main-powerpc64le-default&build=p3034bd2d70e6_sb754d7faaf
Log:

=>> Building biology/wise
build started at Wed Apr 19 20:15:11 UTC 2023
port directory: /usr/ports/biology/wise
package name: wise-2.4.1_1
building for: FreeBSD main-powerpc64le-default-job-13 14.0-CURRENT FreeBSD 14.0-CURRENT 1400082 powerpc
maintained by: ports@FreeBSD.org
Makefile ident: 
Poudriere version: 3.2.8-23-ga7f8d188
Host OSVERSION: 1400073
Jail OSVERSION: 1400082
Job Id: 13




!!! Jail is newer than host. (Jail: 1400082, Host: 1400073) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/sh
OSVERSION=1400082
UNAME_v=FreeBSD 14.0-CURRENT 1400082
UNAME_r=14.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-23-ga7f8d188
MASTERMNT=/usr/local/poudriere/data/.m/main-powerpc64le-default/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/main-powerpc64le-default/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=main-powerpc64le-default
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/main-powerpc64le-default/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
===> The following configuration options are available for wise-2.4.1_1:
     DOCS=on: Build and/or install documentation
     EXAMPLES=on: Build and/or install examples
===> Use 'make config' to modify these settings
---End OPTIONS List---

--MAINTAINER--
ports@FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/biology/wise/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/wise/work  XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/wise/work/.cache  HOME=/wrkdirs/usr/ports/biology/wise/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/wise/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/wise/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/wise/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/wise/work  XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/wise/work/.cache  HOME=/wrkdirs/usr/ports/biology/wise/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/wise/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/wise/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 PREFIX=/usr/local  LOCALBASE=/usr/local  CC="cc" CFLAGS="-O2 -pipe  -fstack-protector-strong -fno-strict-aliasing "  CPP="cpp" CPPFLAGS=""  LDFLAGS=" -fstack-protector-strong " LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing  "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_
 INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
PORTDOCS="" PORTEXAMPLES="" GTK2_VERSION="2.10.0"  GTK3_VERSION="3.0.0"  GTK4_VERSION="4.0.0" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/wise"  EXAMPLESDIR="share/examples/wise"  DATADIR="share/wise"  WWWDIR="www/wise"  ETCDIR="etc/wise"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/wise DOCSDIR=/usr/local/share/doc/wise EXAMPLESDIR=/usr/local/share/examples/wise  WWWDIR=/usr/local/www/wise ETCDIR=/usr/local/etc/wise
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=FreeBSD clang version 15.0.7 (https://github.com/llvm/llvm-project.git llvmorg-15.0.7-0-g8dfdcc7b7bf6) Target: powerpc64le-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin
_ALTCCVERSION_921dbbb2=none
_CXXINTERNAL_acaad9ca=FreeBSD clang version 15.0.7 (https://github.com/llvm/llvm-project.git llvmorg-15.0.7-0-g8dfdcc7b7bf6) Target: powerpc64le-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=yes
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=yes
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=yes
CC_OUTPUT_921dbbb2_f00456e5=yes
CC_OUTPUT_921dbbb2_65ad290d=yes
CC_OUTPUT_921dbbb2_f2776b26=yes
CC_OUTPUT_921dbbb2_53255a77=yes
CC_OUTPUT_921dbbb2_911cfe02=yes
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=yes
CC_OUTPUT_921dbbb2_160933ec=yes
CC_OUTPUT_921dbbb2_fb62803b=yes
CC_OUTPUT_921dbbb2_af59ad06=yes
CC_OUTPUT_921dbbb2_a15f3fcf=yes
_OBJC_CCVERSION_921dbbb2=FreeBSD clang version 15.0.7 (https://github.com/llvm/llvm-project.git llvmorg-15.0.7-0-g8dfdcc7b7bf6) Target: powerpc64le-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin
_OBJC_ALTCCVERSION_921dbbb2=none
ARCH=powerpc64le
OPSYS=FreeBSD
_OSRELEASE=14.0-CURRENT
OSREL=14.0
OSVERSION=1400082
PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=524288
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  33554432
stack size              (kbytes, -s)  524288
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>   NOTICE:

The wise port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://docs.freebsd.org/en/articles/contributing/#ports-contributing

===========================================================================
=======================<phase: pkg-depends    >============================
===>   wise-2.4.1_1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.19.1_1.pkg
[main-powerpc64le-default-job-13] Installing pkg-1.19.1_1...
[main-powerpc64le-default-job-13] Extracting pkg-1.19.1_1: .......... done
===>   wise-2.4.1_1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of wise-2.4.1_1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>   NOTICE:

The wise port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://docs.freebsd.org/en/articles/contributing/#ports-contributing

===> Fetching all distfiles required by wise-2.4.1_1 for building
<snip>
mott_api.c:207:12: note: include the header <ctype.h> or explicitly provide a declaration for 'toupper'
3 warnings generated.
--- wise2_mott_bridge.o ---
cc -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -c   -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include  -I../../dynlibsrc -I../../base wise2_mott_bridge.c
--- libmott.a ---
ar ru libmott.a mott_api.o gaplib.o wise2_mott_bridge.o
ar: warning: creating libmott.a
if test -x /bin/ranlib; then /bin/ranlib libmott.a; else exit 0; fi
(cd socket ; /usr/bin/make CC="cc" CFLAGS="-O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -c   `pkg-config glib-2.0 --cflags`" libwisesocket.a )
--- functionserver.o ---
--- functionclient.o ---
--- functionserver.o ---
cc -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -c   -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include  -I../base/ functionserver.c
--- functionclient.o ---
cc -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -c   -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include  -I../base/ functionclient.c
functionclient.dy:193:24: warning: incompatible pointer types passing 'struct sockaddr_in *' to parameter of type 'const struct sockaddr *' [-Wincompatible-pointer-types]
  connect(out->socket, &server, sizeof(server));
                       ^~~~~~~
/usr/include/sys/socket.h:686:41: note: passing argument to parameter here
int     connect(int, const struct sockaddr *, socklen_t);
                                            ^
1 warning generated.
--- anonobj.o ---
--- transferinterface.o ---
--- anonobj.o ---
cc -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -c   -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include  -I../base/ anonobj.c
--- transferinterface.o ---
cc -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -c   -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include  -I../base/ transferinterface.c
--- directsocketwrite.o ---
cc -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -c   -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include  -I../base/ directsocketwrite.c
--- libwisesocket.a ---
ar ru libwisesocket.a functionserver.o functionclient.o anonobj.o transferinterface.o directsocketwrite.o
ar: warning: creating libwisesocket.a
if test -x /bin/ranlib; then /bin/ranlib libwisesocket.a; else exit 0; fi
(cd dnaindex ; /usr/bin/make CC="cc" CFLAGS="-O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -c   `pkg-config glib-2.0 --cflags`" all )
--- kmer_assembly.o ---
--- kmer_index_interface.o ---
--- kmer_assembly.o ---
cc -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -c   -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include  -I../base/ -I../dynlibsrc/ -I../models kmer_assembly.c
--- kmer_index_interface.o ---
cc -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -c   -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include  -I../base/ -I../dynlibsrc/ -I../models kmer_index_interface.c
--- kmer_direct.o ---
cc -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -c   -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include  -I../base/ -I../dynlibsrc/ -I../models kmer_direct.c
--- kmer_assembly.o ---
kmer_assembly.dy:296:44: warning: format specifies type 'long' but the argument has type 'kmer_t' (aka 'long long') [-Wformat]
  fprintf(ofp,"Node %ld of sequence %s \n",node->number,buffer);
                    ~~~                    ^~~~~~~~~~~~
                    %lld
kmer_assembly.dy:302:104: warning: format specifies type 'long' but the argument has type 'kmer_t' (aka 'long long') [-Wformat]
    fprintf(ofp,"  ... prev ... %c, %d to %ld\n",node->prev[i]->base,node->prev[i]->sequence_label_len,node->prev[i]->prev->number);
                                          ~~~                                                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
                                          %lld
kmer_assembly.dy:309:104: warning: format specifies type 'long' but the argument has type 'kmer_t' (aka 'long long') [-Wformat]
    fprintf(ofp,"  ... next ... %c, %d to %ld\n",node->next[i]->base,node->next[i]->sequence_label_len,node->next[i]->next->number);
                                          ~~~                                                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
                                          %lld
kmer_assembly.dy:365:88: warning: format specifies type 'long' but the argument has type 'KmerAssemblyLink *' (aka 'struct KmerAssemblyLink *') [-Wformat]
  fprintf(stderr,"    ...unable to remove label %ld from link %ld (%d labels)\n",label,kal,kal->sequence_label_len);
                                                              ~~~                      ^~~
kmer_assembly.dy:367:36: warning: more '%' conversions than data arguments [-Wformat-insufficient-args]
    fprintf(stderr,"     [%ld] is %d label\n",kal->sequence_label[i]);
                                  ~^
--- kmer_hash.o ---
cc -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -c   -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include  -I../base/ -I../dynlibsrc/ -I../models kmer_hash.c
--- kmer_assembly.o ---
5 warnings generated.
--- kmer_count.o ---
cc -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -c   -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include  -I../base/ -I../dynlibsrc/ -I../models kmer_count.c
--- kmer_hash.o ---
kmer_hash.dy:318:41: warning: format specifies type 'unsigned long' but the argument has type 'kmer_t' (aka 'long long') [-Wformat]
  fprintf(stderr, "min_kmer: %016lx\n", khi->min_kmer);
                             ~~~~~~     ^~~~~~~~~~~~~
                             %016llx
kmer_hash.dy:319:41: warning: format specifies type 'unsigned long' but the argument has type 'kmer_t' (aka 'long long') [-Wformat]
  fprintf(stderr, "max_kmer: %016lx\n", khi->max_kmer);
                             ~~~~~~     ^~~~~~~~~~~~~
                             %016llx
2 warnings generated.
--- kmer_glib_index.o ---
cc -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -c   -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include  -I../base/ -I../dynlibsrc/ -I../models kmer_glib_index.c
--- singleseqspace.o ---
cc -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -c   -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include  -I../base/ -I../dynlibsrc/ -I../models singleseqspace.c
--- dnamapping.o ---
cc -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -c   -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include  -I../base/ -I../dynlibsrc/ -I../models dnamapping.c
--- largeseqreader.o ---
cc -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -c   -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include  -I../base/ -I../dynlibsrc/ -I../models largeseqreader.c
largeseqreader.dy:44:9: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare]
  if( c == EOF ) {
      ~ ^  ~~~
largeseqreader.dy:54:25: warning: result of comparison of constant -1 with expression of type 'char' is always true [-Wtautological-constant-out-of-range-compare]
  while( (c=fgetc(ifp)) != EOF ) {
         ~~~~~~~~~~~~~~ ^  ~~~
largeseqreader.dy:63:27: warning: result of comparison of constant -1 with expression of type 'char' is always true [-Wtautological-constant-out-of-range-compare]
    while( (c=fgetc(ifp)) != EOF ) {
           ~~~~~~~~~~~~~~ ^  ~~~
largeseqreader.dy:74:25: warning: result of comparison of constant -1 with expression of type 'char' is always true [-Wtautological-constant-out-of-range-compare]
  while( (c=fgetc(ifp)) != EOF ) {
         ~~~~~~~~~~~~~~ ^  ~~~
4 warnings generated.
--- kmer_assembly_untangler.o ---
cc -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -c   -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include  -I../base/ -I../dynlibsrc/ -I../models kmer_assembly_untangler.c
--- kmer_assembly_contig.o ---
cc -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -c   -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include  -I../base/ -I../dynlibsrc/ -I../models kmer_assembly_contig.c
--- kmer_assembly_untangler.o ---
kmer_assembly_untangler.dy:52:65: warning: cast to smaller integer type 'int' from 'KmerAssemblyLink *' (aka 'struct KmerAssemblyLink *') [-Wpointer-to-int-cast]
    fprintf(ofp,"%3d memory %d, from [%s] to [%s], base %c\n",i,(int)kap->stack[i],back,forw,kap->stack[i]->base);
                                                                ^~~~~~~~~~~~~~~~~~
kmer_assembly_untangler.dy:120:80: warning: format specifies type 'long' but the argument has type 'kmer_t' (aka 'long long') [-Wformat]
      fprintf(stderr,"TANGLE: Node %ld, %s has forward %d and back %d links\n",node->number,buffer,node->next_len,node->prev_len);
                                   ~~~                                         ^~~~~~~~~~~~
                                   %lld
kmer_assembly_untangler.dy:141:71: warning: format specifies type 'long' but the argument has type 'kmer_t' (aka 'long long') [-Wformat]
      fprintf(stderr,"Will attempt untangle starting at %ld to %ld\n",node->prev[i]->prev->number,node->number);
                                                        ~~~           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
                                                        %lld
kmer_assembly_untangler.dy:141:99: warning: format specifies type 'long' but the argument has type 'kmer_t' (aka 'long long') [-Wformat]
      fprintf(stderr,"Will attempt untangle starting at %ld to %ld\n",node->prev[i]->prev->number,node->number);
                                                               ~~~                                ^~~~~~~~~~~~
                                                               %lld
kmer_assembly_untangler.dy:157:73: warning: format specifies type 'long' but the argument has type 'kmer_t' (aka 'long long') [-Wformat]
      fprintf(stderr,"RESOLVED: Node %ld [%s] Fully untangled now...\n",node->number,buffer);
                                     ~~~                                ^~~~~~~~~~~~
                                     %lld
kmer_assembly_untangler.dy:159:69: warning: format specifies type 'long' but the argument has type 'kmer_t' (aka 'long long') [-Wformat]
      fprintf(stderr,"UNRESOLVED: Node %ld [%s] still tangled...\n",node->number,buffer);
                                       ~~~                          ^~~~~~~~~~~~
                                       %lld
kmer_assembly_untangler.dy:444:89: warning: format specifies type 'long' but the argument has type 'kmer_t' (aka 'long long') [-Wformat]
    fprintf(stderr,"looking at node %ld with path length %d, next length %d depth %d\n",current->next->number,pathlen,current->next->next_len,current->sequence_label_len);
                                    ~~~                                                 ^~~~~~~~~~~~~~~~~~~~~
                                    %lld
kmer_assembly_untangler.dy:568:75: warning: incompatible pointer types passing 'long[10000]' to parameter of type 'int *' [-Wincompatible-pointer-types]
        lift_backward_tangled_tail(kai,newpath->stack[newpath->stack_len-1],path,transferred_label,transferred_pos,transferred_len);
                                                                                 ^~~~~~~~~~~~~~~~~
./kmer_assembly_untangler.h:174:116: note: passing argument to parameter 'start_label' here
void Wise2_lift_backward_tangled_tail(KmerAssemblyIndex * kai,KmerAssemblyLink * new,KmerAssemblyPath * tail,int * start_label,SinglePosSequence ** positions,int label_len);
                                                                                                                   ^
kmer_assembly_untangler.dy:746:149: warning: format specifies type 'long' but the argument has type 'kmer_t' (aka 'long long') [-Wformat]
    fprintf(stderr,"Moving stack position %d, depth %d, transfer %d, between %ld [%s] and %ld [%s]\n",i,kap->stack[i]->sequence_label_len,label_len,kap->stack[i]->prev->number,back,kap->stack[i]->next->number,forw);
                                                                             ~~~                                                                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~
                                                                             %lld
kmer_assembly_untangler.dy:746:182: warning: format specifies type 'long' but the argument has type 'kmer_t' (aka 'long long') [-Wformat]
    fprintf(stderr,"Moving stack position %d, depth %d, transfer %d, between %ld [%s] and %ld [%s]\n",i,kap->stack[i]->sequence_label_len,label_len,kap->stack[i]->prev->number,back,kap->stack[i]->next->number,forw);
                                                                                          ~~~                                                                                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~
                                                                                          %lld
--- kmer_assembly_error.o ---
cc -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -c   -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include  -I../base/ -I../dynlibsrc/ -I../models kmer_assembly_error.c
--- kmer_assembly_untangler.o ---
10 warnings generated.
--- assembly.o ---
cc -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -c   -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include  -I../base/ -I../dynlibsrc/ -I../models assembly.c
--- kmer_assembly_error.o ---
kmer_assembly_error.dy:93:66: warning: format specifies type 'long' but the argument has type 'kmer_t' (aka 'long long') [-Wformat]
      fprintf(stderr,"Marking node (%ld) [%s] as next tangled\n",node->number,buffer);
                                    ~~~                          ^~~~~~~~~~~~
                                    %lld
kmer_assembly_error.dy:105:66: warning: format specifies type 'long' but the argument has type 'kmer_t' (aka 'long long') [-Wformat]
      fprintf(stderr,"Marking node (%ld) [%s] as prev tangled\n",node->number,buffer);
                                    ~~~                          ^~~~~~~~~~~~
                                    %lld
kmer_assembly_error.dy:351:127: warning: format specifies type 'int' but the argument has type 'int *' [-Wformat]
        fprintf(stderr,"in considering indel (%d, path %d), real (%c) and error (%c) do not agree at position %d,%d\n",delete_length,current_path,real->base,error->base,real_pos,error_pos);
                                                       ~~                                                                            ^~~~~~~~~~~~
3 warnings generated.
--- assembly_stream_interface.o ---
cc -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -c   -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include  -I../base/ -I../dynlibsrc/ -I../models assembly_stream_interface.c
--- assembly_stream_fasta.o ---
cc -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -c   -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include  -I../base/ -I../dynlibsrc/ -I../models assembly_stream_fasta.c
--- assembly_sanger_project.o ---
cc -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -c   -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include  -I../base/ -I../dynlibsrc/ -I../models assembly_sanger_project.c
--- assembly_stream_cons.o ---
cc -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -c   -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include  -I../base/ -I../dynlibsrc/ -I../models assembly_stream_cons.c
--- compressed_protein_index.o ---
cc -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -c   -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include  -I../base/ -I../dynlibsrc/ -I../models compressed_protein_index.c
compressed_protein_index.dy:223:10: error: incompatible pointer to integer conversion returning 'void *' from a function with result type 'boolean' (aka 'int') [-Wint-conversion]
  return NULL;
         ^~~~
/usr/include/sys/_null.h:34:14: note: expanded from macro 'NULL'
#define NULL    ((void *)0)
                ^~~~~~~~~~~
1 error generated.
*** [compressed_protein_index.o] Error code 1

make[2]: stopped in /wrkdirs/usr/ports/biology/wise/work/wise2.4.1/src/dnaindex
1 error

make[2]: stopped in /wrkdirs/usr/ports/biology/wise/work/wise2.4.1/src/dnaindex
*** [realall] Error code 2

make[1]: stopped in /wrkdirs/usr/ports/biology/wise/work/wise2.4.1/src
1 error

make[1]: stopped in /wrkdirs/usr/ports/biology/wise/work/wise2.4.1/src
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/wise