[package - 131releng-armv7-quarterly][science/py-pyscf] Failed for py39-pyscf-2.2.0 in build

From: <pkg-fallout_at_FreeBSD.org>
Date: Sun, 16 Apr 2023 00:42:42 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri@FreeBSD.org
Log URL:        https://pkg-status.freebsd.org/ampere1/data/131releng-armv7-quarterly/7556984ae7d8/logs/py39-pyscf-2.2.0.log
Build URL:      https://pkg-status.freebsd.org/ampere1/build.html?mastername=131releng-armv7-quarterly&build=7556984ae7d8
Log:

=>> Building science/py-pyscf
build started at Sun Apr 16 00:42:07 UTC 2023
port directory: /usr/ports/science/py-pyscf
package name: py39-pyscf-2.2.0
building for: FreeBSD 131releng-armv7-quarterly-job-03 13.1-RELEASE-p7 FreeBSD 13.1-RELEASE-p7 1301000 arm
maintained by: yuri@FreeBSD.org
Makefile ident: 
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=======================<phase: check-sanity   >============================
===>  License BSD2CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   py39-pyscf-2.2.0 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.19.1_1.pkg
[131releng-armv7-quarterly-job-03] Installing pkg-1.19.1_1...
[131releng-armv7-quarterly-job-03] Extracting pkg-1.19.1_1: .......... done
===>   py39-pyscf-2.2.0 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of py39-pyscf-2.2.0
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py39-pyscf-2.2.0 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py39-pyscf-2.2.0 for building
=> SHA256 Checksum OK for pyscf-pyscf-v2.2.0_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py39-pyscf-2.2.0 for building
===>  Extracting for py39-pyscf-2.2.0
=> SHA256 Checksum OK for pyscf-pyscf-v2.2.0_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for py39-pyscf-2.2.0
===>  Applying FreeBSD patches for py39-pyscf-2.2.0 from /usr/ports/science/py-pyscf/files
===========================================================================
=======================<phase: build-depends  >============================
===>   py39-pyscf-2.2.0 depends on package: py39-numpy>=1.16,1<1.25,1 - not found
===>   Installing existing package /packages/All/py39-numpy-1.24.1,1.pkg
[131releng-armv7-quarterly-job-03] Installing py39-numpy-1.24.1,1...
[131releng-armv7-quarterly-job-03] `-- Installing gcc12-12.2.0_5...
[131releng-armv7-quarterly-job-03] |   `-- Installing binutils-2.40_2,1...
[131releng-armv7-quarterly-job-03] |   | `-- Installing gettext-runtime-0.21.1...
[131releng-armv7-quarterly-job-03] |   |   `-- Installing indexinfo-0.3.1...
[131releng-armv7-quarterly-job-03] |   |   `-- Extracting indexinfo-0.3.1: .... done
[131releng-armv7-quarterly-job-03] |   | `-- Extracting gettext-runtime-0.21.1: .......... done
[131releng-armv7-quarterly-job-03] |   | `-- Installing zstd-1.5.4...
[131releng-armv7-quarterly-job-03] |   |   `-- Installing liblz4-1.9.4,1...
[131releng-armv7-quarterly-job-03] |   |   `-- Extracting liblz4-1.9.4,1: .......... done
[131releng-armv7-quarterly-job-03] |   | `-- Extracting zstd-1.5.4: .......... done
[131releng-armv7-quarterly-job-03] |   `-- Extracting binutils-2.40_2,1: .......... done
[131releng-armv7-quarterly-job-03] |   `-- Installing gmp-6.2.1...
[131releng-armv7-quarterly-job-03] |   `-- Extracting gmp-6.2.1: .......... done
[131releng-armv7-quarterly-job-03] |   `-- Installing mpc-1.2.1...
[131releng-armv7-quarterly-job-03] |   | `-- Installing mpfr-4.2.0,1...
[131releng-armv7-quarterly-job-03] |   | `-- Extracting mpfr-4.2.0,1: .......... done
[131releng-armv7-quarterly-job-03] |   `-- Extracting mpc-1.2.1: ......... done
[131releng-armv7-quarterly-job-03] `-- Extracting gcc12-12.2.0_5: .......... done
[131releng-armv7-quarterly-job-03] `-- Installing openblas-0.3.20,1...
[131releng-armv7-quarterly-job-03] `-- Extracting openblas-0.3.20,1: .......... done
[131releng-armv7-quarterly-job-03] `-- Installing py39-setuptools-63.1.0...
[131releng-armv7-quarterly-job-03] |   `-- Installing python39-3.9.16_2...
[131releng-armv7-quarterly-job-03] |   | `-- Installing libffi-3.4.4...
[131releng-armv7-quarterly-job-03] |   | `-- Extracting libffi-3.4.4: .......... done
[131releng-armv7-quarterly-job-03] |   | `-- Installing mpdecimal-2.5.1...
[131releng-armv7-quarterly-job-03] |   | `-- Extracting mpdecimal-2.5.1: .......... done
[131releng-armv7-quarterly-job-03] |   | `-- Installing readline-8.2.0...
[131releng-armv7-quarterly-job-03] |   | `-- Extracting readline-8.2.0: .......... done
[131releng-armv7-quarterly-job-03] |   `-- Extracting python39-3.9.16_2: .......... done
[131releng-armv7-quarterly-job-03] `-- Extracting py39-setuptools-63.1.0: .......... done
[131releng-armv7-quarterly-job-03] `-- Installing suitesparse-umfpack-6.1.0...
[131releng-armv7-quarterly-job-03] |   `-- Installing metis-5.1.0_9...
[131releng-armv7-quarterly-job-03] |   `-- Extracting metis-5.1.0_9: .......... done
[131releng-armv7-quarterly-job-03] |   `-- Installing suitesparse-amd-3.0.3...
[131releng-armv7-quarterly-job-03] |   | `-- Installing suitesparse-config-7.0.1...
[131releng-armv7-quarterly-job-03] |   | `-- Extracting suitesparse-config-7.0.1: .......... done
[131releng-armv7-quarterly-job-03] |   `-- Extracting suitesparse-amd-3.0.3: .......... done
[131releng-armv7-quarterly-job-03] |   `-- Installing suitesparse-camd-3.0.3...
[131releng-armv7-quarterly-job-03] |   `-- Extracting suitesparse-camd-3.0.3: .......... done
[131releng-armv7-quarterly-job-03] |   `-- Installing suitesparse-ccolamd-3.0.3...
[131releng-armv7-quarterly-job-03] |   `-- Extracting suitesparse-ccolamd-3.0.3: .......... done
[131releng-armv7-quarterly-job-03] |   `-- Installing suitesparse-cholmod-4.0.3...
[131releng-armv7-quarterly-job-03] |   | `-- Installing suitesparse-colamd-3.0.3...
[131releng-armv7-quarterly-job-03] |   | `-- Extracting suitesparse-colamd-3.0.3: .......... done
[131releng-armv7-quarterly-job-03] |   `-- Extracting suitesparse-cholmod-4.0.3: .......... done
[131releng-armv7-quarterly-job-03] `-- Extracting suitesparse-umfpack-6.1.0: .......... done
[131releng-armv7-quarterly-job-03] Extracting py39-numpy-1.24.1,1: .......... done
=====
Message from gcc12-12.2.0_5:

--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using

  -Wl,-rpath=/usr/local/lib/gcc12

For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
=====
Message from python39-3.9.16_2:

--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

py39-gdbm       databases/py-gdbm@py39
py39-sqlite3    databases/py-sqlite3@py39
py39-tkinter    x11-toolkits/py-tkinter@py39
=====
Message from metis-5.1.0_9:

--
===>   NOTICE:

The metis port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===>   py39-pyscf-2.2.0 depends on package: py39-numpy>=1.16,1<1.25,1 - found
===>   Returning to build of py39-pyscf-2.2.0
===>   py39-pyscf-2.2.0 depends on package: py39-scipy>0 - not found
===>   Installing existing package /packages/All/py39-scipy-1.10.0.pkg
[131releng-armv7-quarterly-job-03] Installing py39-scipy-1.10.0...
[131releng-armv7-quarterly-job-03] `-- Installing blas-3.11.0...
[131releng-armv7-quarterly-job-03] `-- Extracting blas-3.11.0: ........ done
[131releng-armv7-quarterly-job-03] Extracting py39-scipy-1.10.0: .......... done
===>   py39-pyscf-2.2.0 depends on package: py39-scipy>0 - found
===>   Returning to build of py39-pyscf-2.2.0
===>   py39-pyscf-2.2.0 depends on package: py39-h5py>=2.7 - not found
===>   Installing existing package /packages/All/py39-h5py-3.8.0.pkg
[131releng-armv7-quarterly-job-03] Installing py39-h5py-3.8.0...
[131releng-armv7-quarterly-job-03] `-- Installing hdf5-1.12.2_1,1...
[131releng-armv7-quarterly-job-03] |   `-- Installing libaec-1.0.6...
[131releng-armv7-quarterly-job-03] |   `-- Extracting libaec-1.0.6: .......... done
[131releng-armv7-quarterly-job-03] `-- Extracting hdf5-1.12.2_1,1: .......... done
[131releng-armv7-quarterly-job-03] Extracting py39-h5py-3.8.0: .......... done
===>   py39-pyscf-2.2.0 depends on package: py39-h5py>=2.7 - found
===>   Returning to build of py39-pyscf-2.2.0
===>   py39-pyscf-2.2.0 depends on executable: cmake - not found
===>   Installing existing package /packages/All/cmake-core-3.25.1.pkg
[131releng-armv7-quarterly-job-03] Installing cmake-core-3.25.1...
[131releng-armv7-quarterly-job-03] `-- Installing expat-2.5.0...
[131releng-armv7-quarterly-job-03] `-- Extracting expat-2.5.0: .......... done
[131releng-armv7-quarterly-job-03] `-- Installing jsoncpp-1.9.5...
[131releng-armv7-quarterly-job-03] `-- Extracting jsoncpp-1.9.5: .......... done
[131releng-armv7-quarterly-job-03] `-- Installing libuv-1.44.2...
[131releng-armv7-quarterly-job-03] `-- Extracting libuv-1.44.2: .......... done
[131releng-armv7-quarterly-job-03] `-- Installing rhash-1.4.3...
[131releng-armv7-quarterly-job-03] `-- Extracting rhash-1.4.3: .......... done
[131releng-armv7-quarterly-job-03] Extracting cmake-core-3.25.1: .......... done
===>   py39-pyscf-2.2.0 depends on executable: cmake - found
===>   Returning to build of py39-pyscf-2.2.0
===>   py39-pyscf-2.2.0 depends on executable: gmake - not found
===>   Installing existing package /packages/All/gmake-4.3_2.pkg
[131releng-armv7-quarterly-job-03] Installing gmake-4.3_2...
[131releng-armv7-quarterly-job-03] Extracting gmake-4.3_2: .......... done
===>   py39-pyscf-2.2.0 depends on executable: gmake - found
===>   Returning to build of py39-pyscf-2.2.0
===>   py39-pyscf-2.2.0 depends on executable: gfortran12 - found
===>   py39-pyscf-2.2.0 depends on package: py39-setuptools>=63.1.0 - found
===>   py39-pyscf-2.2.0 depends on file: /usr/local/bin/python3.9 - found
===>   py39-pyscf-2.2.0 depends on file: /usr/local/bin/as - found
===========================================================================
=======================<phase: lib-depends    >============================
===>   py39-pyscf-2.2.0 depends on shared library: libcint.so - not found
===>   Installing existing package /packages/All/libcint-5.3.0.pkg
[131releng-armv7-quarterly-job-03] Installing libcint-5.3.0...
[131releng-armv7-quarterly-job-03] Extracting libcint-5.3.0: ........ done
===>   py39-pyscf-2.2.0 depends on shared library: libcint.so - found (/usr/local/lib/libcint.so)
===>   Returning to build of py39-pyscf-2.2.0
===>   py39-pyscf-2.2.0 depends on shared library: libxc.so - not found
===>   Installing existing package /packages/All/libxc-6.0.0.pkg
[131releng-armv7-quarterly-job-03] Installing libxc-6.0.0...
[131releng-armv7-quarterly-job-03] Extracting libxc-6.0.0: .......... done
===>   py39-pyscf-2.2.0 depends on shared library: libxc.so - found (/usr/local/lib/libxc.so)
===>   Returning to build of py39-pyscf-2.2.0
===>   py39-pyscf-2.2.0 depends on shared library: libxcfun.so - not found
===>   Installing existing package /packages/All/xcfun-2.1.1.1.pkg
[131releng-armv7-quarterly-job-03] Installing xcfun-2.1.1.1...
[131releng-armv7-quarterly-job-03] Extracting xcfun-2.1.1.1: .......... done
===>   py39-pyscf-2.2.0 depends on shared library: libxcfun.so - found (/usr/local/lib/libxcfun.so)
===>   Returning to build of py39-pyscf-2.2.0
===>   py39-pyscf-2.2.0 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so)
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for py39-pyscf-2.2.0
running config
===========================================================================
=======================<phase: build          >============================
===>  Building for py39-pyscf-2.2.0
running build
running build_ext
Configuring extensions
cmake -S/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.2.0/pyscf/lib -Bbuild/temp.freebsd-13.1-RELEASE-p7-arm-cpython-39
-- The C compiler identification is Clang 13.0.0
-- The CXX compiler identification is Clang 13.0.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Looking for sgemm_
-- Looking for sgemm_ - not found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE  
-- Looking for sgemm_
-- Looking for sgemm_ - found
-- Found BLAS: /usr/local/lib/libopenblas.so  
-- Looking for ffsll
-- Looking for ffsll - found
-- BLAS libraries: /usr/local/lib/libopenblas.so
CMake Error at /wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.2.0/build/temp.freebsd-13.1-RELEASE-p7-arm-cpython-39/CMakeFiles/CMakeTmp/CMakeLists.txt:15 (add_executable):
  No SOURCES given to target: cmTC_5e067


CMake Error at /usr/local/share/cmake/Modules/FindOpenMP.cmake:261 (try_compile):
  Failed to generate test project build system.
Call Stack (most recent call first):
  /usr/local/share/cmake/Modules/FindOpenMP.cmake:537 (_OPENMP_GET_FLAGS)
  CMakeLists.txt:97 (find_package)


-- Configuring incomplete, errors occurred!
See also "/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.2.0/build/temp.freebsd-13.1-RELEASE-p7-arm-cpython-39/CMakeFiles/CMakeOutput.log".
See also "/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.2.0/build/temp.freebsd-13.1-RELEASE-p7-arm-cpython-39/CMakeFiles/CMakeError.log".
error: command '/usr/local/bin/cmake' failed with exit code 1
*** Error code 1

Stop.
make: stopped in /usr/ports/science/py-pyscf