[package - main-powerpc64le-default][biology/megahit] Failed for megahit-1.2.9_1 in build
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Date: Mon, 10 Apr 2023 21:02:04 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: jwb@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/foul2/data/main-powerpc64le-default/p6eeeb3bd99c4_sb754d7faaf/logs/megahit-1.2.9_1.log
Build URL: https://pkg-status.freebsd.org/foul2/build.html?mastername=main-powerpc64le-default&build=p6eeeb3bd99c4_sb754d7faaf
Log:
=>> Building biology/megahit
build started at Mon Apr 10 21:01:12 UTC 2023
port directory: /usr/ports/biology/megahit
package name: megahit-1.2.9_1
building for: FreeBSD main-powerpc64le-default-job-19 14.0-CURRENT FreeBSD 14.0-CURRENT 1400082 powerpc
maintained by: jwb@FreeBSD.org
Makefile ident:
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Host OSVERSION: 1400073
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Job Id: 19
!!! Jail is newer than host. (Jail: 1400082, Host: 1400073) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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=======================<phase: check-sanity >============================
===> License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> megahit-1.2.9_1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.19.1_1.pkg
[main-powerpc64le-default-job-19] Installing pkg-1.19.1_1...
[main-powerpc64le-default-job-19] Extracting pkg-1.19.1_1: .......... done
===> megahit-1.2.9_1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of megahit-1.2.9_1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by megahit-1.2.9_1 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by megahit-1.2.9_1 for building
=> SHA256 Checksum OK for voutcn-megahit-v1.2.9_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by megahit-1.2.9_1 for building
===> Extracting for megahit-1.2.9_1
=> SHA256 Checksum OK for voutcn-megahit-v1.2.9_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for megahit-1.2.9_1
===> Applying FreeBSD patches for megahit-1.2.9_1 from /usr/ports/biology/megahit/files
===========================================================================
=======================<phase: build-depends >============================
===> megahit-1.2.9_1 depends on file: /usr/local/bin/cmake - not found
===> Installing existing package /packages/All/cmake-core-3.25.1.pkg
[main-powerpc64le-default-job-19] Installing cmake-core-3.25.1...
[main-powerpc64le-default-job-19] `-- Installing expat-2.5.0...
[main-powerpc64le-default-job-19] `-- Extracting expat-2.5.0: .......... done
<snip>
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:10:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap.h:51:
/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
: std::integral_constant<bool, __has_trivial_destructor(T) &&
^
/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:294:36: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
: std::integral_constant<bool, __has_trivial_constructor(T) &&
^
/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:329:36: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
: std::integral_constant<bool, __has_trivial_copy(T) &&
^
/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:367:17: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins]
bool, __has_trivial_assign(typename std::remove_reference<T>::type) &&
^
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11:
/usr/lib/clang/15.0.7/include/ppc_wrappers/x86intrin.h:18:2: error: "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error."
#error "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error."
^
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11:
In file included from /usr/lib/clang/15.0.7/include/ppc_wrappers/x86intrin.h:25:
In file included from /usr/lib/clang/15.0.7/include/ppc_wrappers/immintrin.h:15:
/usr/lib/clang/15.0.7/include/ppc_wrappers/mmintrin.h:31:2: error: "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error."
#error \
^
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11:
In file included from /usr/lib/clang/15.0.7/include/ppc_wrappers/x86intrin.h:25:
In file included from /usr/lib/clang/15.0.7/include/ppc_wrappers/immintrin.h:17:
/usr/lib/clang/15.0.7/include/ppc_wrappers/xmmintrin.h:31:2: error: "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error."
#error \
^
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11:
In file included from /usr/lib/clang/15.0.7/include/ppc_wrappers/x86intrin.h:25:
In file included from /usr/lib/clang/15.0.7/include/ppc_wrappers/immintrin.h:17:
In file included from /usr/lib/clang/15.0.7/include/ppc_wrappers/xmmintrin.h:58:
/usr/lib/clang/15.0.7/include/ppc_wrappers/mmintrin.h:31:2: error: "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error."
#error \
^
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11:
In file included from /usr/lib/clang/15.0.7/include/ppc_wrappers/x86intrin.h:25:
In file included from /usr/lib/clang/15.0.7/include/ppc_wrappers/immintrin.h:19:
/usr/lib/clang/15.0.7/include/ppc_wrappers/emmintrin.h:32:2: error: "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error."
#error \
^
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11:
In file included from /usr/lib/clang/15.0.7/include/ppc_wrappers/x86intrin.h:25:
In file included from /usr/lib/clang/15.0.7/include/ppc_wrappers/immintrin.h:19:
In file included from /usr/lib/clang/15.0.7/include/ppc_wrappers/emmintrin.h:45:
/usr/lib/clang/15.0.7/include/ppc_wrappers/xmmintrin.h:31:2: error: "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error."
#error \
^
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11:
In file included from /usr/lib/clang/15.0.7/include/ppc_wrappers/x86intrin.h:25:
In file included from /usr/lib/clang/15.0.7/include/ppc_wrappers/immintrin.h:21:
/usr/lib/clang/15.0.7/include/ppc_wrappers/pmmintrin.h:35:2: error: "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this warning."
#error \
^
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11:
In file included from /usr/lib/clang/15.0.7/include/ppc_wrappers/x86intrin.h:25:
In file included from /usr/lib/clang/15.0.7/include/ppc_wrappers/immintrin.h:21:
In file included from /usr/lib/clang/15.0.7/include/ppc_wrappers/pmmintrin.h:46:
/usr/lib/clang/15.0.7/include/ppc_wrappers/emmintrin.h:32:2: error: "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error."
#error \
^
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11:
In file included from /usr/lib/clang/15.0.7/include/ppc_wrappers/x86intrin.h:25:
In file included from /usr/lib/clang/15.0.7/include/ppc_wrappers/immintrin.h:23:
In file included from /usr/lib/clang/15.0.7/include/ppc_wrappers/tmmintrin.h:34:
/usr/lib/clang/15.0.7/include/ppc_wrappers/pmmintrin.h:35:2: error: "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this warning."
#error \
^
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_assemble.cpp:29:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/all_algo.h:8:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/bubble_remover.h:10:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/assembly/unitig_graph.h:11:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/sdbg/sdbg.h:15:
In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/kmlib/kmrns.h:11:
In file included from /usr/lib/clang/15.0.7/include/ppc_wrappers/x86intrin.h:25:
In file included from /usr/lib/clang/15.0.7/include/ppc_wrappers/immintrin.h:25:
/usr/lib/clang/15.0.7/include/ppc_wrappers/smmintrin.h:25:2: error: "Please read comment above. Use -DNO_WARN_X86_INTRINSICS to disable this error."
#error \
^
/usr/lib/clang/15.0.7/include/ppc_wrappers/smmintrin.h:71:25: error: use of undeclared identifier '__builtin_mffs'
__fpscr_save.__fr = __builtin_mffs();
^
/usr/lib/clang/15.0.7/include/ppc_wrappers/smmintrin.h:74:5: error: use of undeclared identifier '__builtin_mtfsf'
__builtin_mtfsf(0b00000011, __fpscr_save.__fr);
^
/usr/lib/clang/15.0.7/include/ppc_wrappers/smmintrin.h:86:25: error: use of undeclared identifier '__builtin_mffsl'; did you mean '__builtin_infl'?
__fpscr_save.__fr = __builtin_mffsl();
^
/usr/lib/clang/15.0.7/include/ppc_wrappers/smmintrin.h:86:25: note: '__builtin_infl' declared here
/usr/lib/clang/15.0.7/include/ppc_wrappers/smmintrin.h:89:5: error: use of undeclared identifier '__builtin_set_fpscr_rn'
__builtin_set_fpscr_rn(0b00);
^
/usr/lib/clang/15.0.7/include/ppc_wrappers/smmintrin.h:105:5: error: use of undeclared identifier '__builtin_set_fpscr_rn'
__builtin_set_fpscr_rn(__fpscr_save.__fpscr);
^
/usr/lib/clang/15.0.7/include/ppc_wrappers/smmintrin.h:131:25: error: use of undeclared identifier '__builtin_mffsl'; did you mean '__builtin_infl'?
__fpscr_save.__fr = __builtin_mffsl();
^
/usr/lib/clang/15.0.7/include/ppc_wrappers/smmintrin.h:86:25: note: '__builtin_infl' declared here
__fpscr_save.__fr = __builtin_mffsl();
^
/usr/lib/clang/15.0.7/include/ppc_wrappers/smmintrin.h:133:5: error: use of undeclared identifier '__builtin_mtfsf'
__builtin_mtfsf(0b00000011, __fpscr_save.__fr);
^
/usr/lib/clang/15.0.7/include/ppc_wrappers/smmintrin.h:162:25: error: use of undeclared identifier '__builtin_mffs'
__fpscr_save.__fr = __builtin_mffs();
^
/usr/lib/clang/15.0.7/include/ppc_wrappers/smmintrin.h:165:5: error: use of undeclared identifier '__builtin_mtfsf'
__builtin_mtfsf(0b00000011, __fpscr_save.__fr);
^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
4 warnings and 20 errors generated.
[ 1% 2/110] /usr/bin/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src"' -DNDEBUG -mbmi2 -DUSE_BMI2 -mpopcnt -std=gnu++11 -MD -MT CMakeFiles/megahit_core.dir/src/main.cpp.o -MF CMakeFiles/megahit_core.dir/src/main.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main.cpp
FAILED: CMakeFiles/megahit_core.dir/src/main.cpp.o
/usr/bin/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src"' -DNDEBUG -mbmi2 -DUSE_BMI2 -mpopcnt -std=gnu++11 -MD -MT CMakeFiles/megahit_core.dir/src/main.cpp.o -MF CMakeFiles/megahit_core.dir/src/main.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main.cpp
c++: warning: argument unused during compilation: '-mbmi2' [-Wunused-command-line-argument]
c++: warning: argument unused during compilation: '-mpopcnt' [-Wunused-command-line-argument]
Assertion failed: (IsValid && "Failed to parse output constraint"), function EmitAsmStmt, file /usr/local/poudriere/jails/main-powerpc64le/usr/src/contrib/llvm-project/clang/lib/CodeGen/CGStmt.cpp, line 2336.
PLEASE submit a bug report to https://bugs.freebsd.org/submit/ and include the crash backtrace, preprocessed source, and associated run script.
Stack dump:
0. Program arguments: /usr/bin/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__=\"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src\" -DNDEBUG -mbmi2 -DUSE_BMI2 -mpopcnt -std=gnu++11 -MD -MT CMakeFiles/megahit_core.dir/src/main.cpp.o -MF CMakeFiles/megahit_core.dir/src/main.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main.cpp
1. <eof> parser at end of file
2. Per-file LLVM IR generation
3. /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/utils/cpu_dispatch.h:8:13: Generating code for declaration 'HasPopcnt'
#0 0x000000001577f27c (/usr/bin/c+++0x1577f27c)
#1 0x000000001577c978 (/usr/bin/c+++0x1577c978)
#2 0x000000001570dac8 (/usr/bin/c+++0x1570dac8)
#3 0x000000001570dd90 (/usr/bin/c+++0x1570dd90)
#4 0x0000000817b65bd4 (/lib/libthr.so.3+0x2fbd4)
c++: error: clang frontend command failed with exit code 134 (use -v to see invocation)
FreeBSD clang version 15.0.7 (https://github.com/llvm/llvm-project.git llvmorg-15.0.7-0-g8dfdcc7b7bf6)
Target: powerpc64le-unknown-freebsd14.0
Thread model: posix
InstalledDir: /usr/bin
c++: note: diagnostic msg:
********************
PLEASE ATTACH THE FOLLOWING FILES TO THE BUG REPORT:
Preprocessed source(s) and associated run script(s) are located at:
c++: note: diagnostic msg: /tmp/main-74450a.cpp
c++: note: diagnostic msg: /tmp/main-74450a.sh
c++: note: diagnostic msg:
********************
ninja: build stopped: subcommand failed.
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/megahit