[package - 131releng-armv7-default][graphics/R-cran-rgdal] Failed for R-cran-rgdal-1.5.32_1 in stage
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Date: Fri, 09 Sep 2022 22:25:24 UTC
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: tota@FreeBSD.org Log URL: http://ampere3.nyi.freebsd.org/data/131releng-armv7-default/cfc19930a459/logs/R-cran-rgdal-1.5.32_1.log Build URL: http://ampere3.nyi.freebsd.org/build.html?mastername=131releng-armv7-default&build=cfc19930a459 Log: =>> Building graphics/R-cran-rgdal build started at Fri Sep 9 22:24:17 UTC 2022 port directory: /usr/ports/graphics/R-cran-rgdal package name: R-cran-rgdal-1.5.32_1 building for: FreeBSD 131releng-armv7-default-job-13 13.1-RELEASE-p2 FreeBSD 13.1-RELEASE-p2 1301000 arm maintained by: tota@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-21-g883afb07 Host OSVERSION: 1400063 Jail OSVERSION: 1301000 Job Id: 13 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1301000 UNAME_v=FreeBSD 13.1-RELEASE-p2 1301000 UNAME_r=13.1-RELEASE-p2 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-21-g883afb07 MASTERMNT=/usr/local/poudriere/data/.m/131releng-armv7-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/131releng-armv7-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=131releng-armv7-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/131releng-armv7-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- tota@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran11" FC="gfortran11" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc11" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc11" PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/graphics/R-cran-rgdal/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/graphics/R-cran-rgdal/work XDG_CACHE_HOME=/wrkdirs/usr/ports/graphics/R-cran-rgdal/work/.cache HOME=/wrkdirs/usr/ports/graphics/R-cran-rgdal/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/graphics/R-cran-rgdal/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/graphics/R-cran-rgdal/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran11" FC="gfortran11" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc11" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc11" XDG_DATA_HOME=/wrkdirs/usr/ports/graphics/R-cran-rgdal/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/graphics/R-cran-rgdal/work XDG_CACHE_HOME=/wrkdirs/usr/ports/graphics/R-cran-rgdal/work/.cache HOME=/wrkdirs/usr/ports/graphics/R-cran-rgdal/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/graphics/R-cran-rgdal/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/graphics/R-cran-rgdal/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB= "/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc11 -L/usr/local/lib/gcc11 -B/usr/local/bin -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- R_MOD_DIR=lib/R/library/rgdal OSREL=13.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/rgdal" EXAMPLESDIR="share/examples/rgdal" DATADIR="share/rgdal" WWWDIR="www/rgdal" ETCDIR="etc/rgdal" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/rgdal DOCSDIR=/usr/local/share/doc/rgdal EXAMPLESDIR=/usr/local/share/examples/rgdal WWWDIR=/usr/local/www/rgdal ETCDIR=/usr/local/etc/rgdal --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # 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[131releng-armv7-default-job-13] Extracting pkg-1.18.4: .......... done ===> R-cran-rgdal-1.5.32_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of R-cran-rgdal-1.5.32_1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2+ accepted by the user ===> Fetching all distfiles required by R-cran-rgdal-1.5.32_1 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv2+ accepted by the user ===> Fetching all distfiles required by R-cran-rgdal-1.5.32_1 for building => SHA256 Checksum OK for rgdal_1.5-32.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv2+ accepted by the user ===> Fetching all distfiles required by R-cran-rgdal-1.5.32_1 for building ===> Extracting for R-cran-rgdal-1.5.32_1 => SHA256 Checksum OK for rgdal_1.5-32.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for R-cran-rgdal-1.5.32_1 =========================================================================== =======================<phase: build-depends >============================ ===> R-cran-rgdal-1.5.32_1 depends on package: R-cran-sp>=1.1.0 - not found ===> Installing existing package /packages/All/R-cran-sp-1.5.0.pkg [131releng-armv7-default-job-13] Installing R-cran-sp-1.5.0... [131releng-armv7-default-job-13] `-- Installing R-4.2.1... [131releng-armv7-default-job-13] | `-- Installing cairo-1.17.4_1,3... [131releng-armv7-default-job-13] | | `-- Installing fontconfig-2.13.94_2,1... [131releng-armv7-default-job-13] | | `-- Installing expat-2.4.8... [131releng-armv7-default-job-13] | | `-- Extracting expat-2.4.8: .......... done [131releng-armv7-default-job-13] | | `-- Installing freetype2-2.12.1_2... [131releng-armv7-default-job-13] | | | `-- Installing brotli-1.0.9,1... [131releng-armv7-default-job-13] | | | `-- Extracting brotli-1.0.9,1: .......... done [131releng-armv7-default-job-13] | | | `-- Installing png-1.6.37_1... [131releng-armv7-default-job-13] | | | `-- Extracting png-1.6.37_1: .......... done [131releng-armv7-default-job-13] | | `-- Extracting freetype2-2.12.1_2: .......... done [131releng-armv7-default-job-13] | | `-- Extracting fontconfig-2.13.94_2,1: .......... done [131releng-armv7-default-job-13] | | `-- Installing gettext-runtime-0.21... [131releng-armv7-default-job-13] | | `-- Installing indexinfo-0.3.1... [131releng-armv7-default-job-13] | | `-- Extracting indexinfo-0.3.1: .... done [131releng-armv7-default-job-13] | | `-- Extracting gettext-runtime-0.21: .......... done [131releng-armv7-default-job-13] | | `-- Installing glib-2.72.3,2... <snip> -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc11 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from ghostscript9-agpl-base-9.56.1_3: -- This package installs a script named dvipdf that depends on dvips. If you want to use this script you need to install print/tex-dvipsk. ===== Message from dejavu-2.37_1: -- Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. ===> R-cran-rgdal-1.5.32_1 depends on package: R-cran-sp>=1.1.0 - found ===> Returning to build of R-cran-rgdal-1.5.32_1 ===> R-cran-rgdal-1.5.32_1 depends on file: /usr/local/bin/R - found ===> R-cran-rgdal-1.5.32_1 depends on executable: gfortran11 - found ===> R-cran-rgdal-1.5.32_1 depends on package: pkgconf>=1.3.0_1 - not found ===> Installing existing package /packages/All/pkgconf-1.8.0_1,1.pkg [131releng-armv7-default-job-13] Installing pkgconf-1.8.0_1,1... [131releng-armv7-default-job-13] Extracting pkgconf-1.8.0_1,1: .......... done ===> R-cran-rgdal-1.5.32_1 depends on package: pkgconf>=1.3.0_1 - found ===> Returning to build of R-cran-rgdal-1.5.32_1 ===> R-cran-rgdal-1.5.32_1 depends on file: /usr/local/bin/as - found =========================================================================== =======================<phase: lib-depends >============================ ===> R-cran-rgdal-1.5.32_1 depends on shared library: libgdal.so - not found ===> Installing existing package /packages/All/gdal-3.5.1_3.pkg [131releng-armv7-default-job-13] Installing gdal-3.5.1_3... [131releng-armv7-default-job-13] `-- Installing freexl-1.0.6... [131releng-armv7-default-job-13] `-- Extracting freexl-1.0.6: .......... done [131releng-armv7-default-job-13] `-- Installing geos-3.11.0... [131releng-armv7-default-job-13] `-- Extracting geos-3.11.0: .......... done [131releng-armv7-default-job-13] `-- Installing giflib-5.2.1... 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[131releng-armv7-default-job-13] `-- Extracting qhull-8.0.2_1,1: .......... done [131releng-armv7-default-job-13] `-- Installing sfcgal-1.4.1_2... [131releng-armv7-default-job-13] `-- Extracting sfcgal-1.4.1_2: .......... done [131releng-armv7-default-job-13] `-- Installing spatialite-5.0.1_2... [131releng-armv7-default-job-13] | `-- Installing librttopo-1.1.0... [131releng-armv7-default-job-13] | `-- Extracting librttopo-1.1.0: .......... done [131releng-armv7-default-job-13] `-- Extracting spatialite-5.0.1_2: .......... done [131releng-armv7-default-job-13] `-- Installing webp-1.2.4... [131releng-armv7-default-job-13] `-- Extracting webp-1.2.4: .......... done [131releng-armv7-default-job-13] `-- Installing xerces-c3-3.2.3... [131releng-armv7-default-job-13] `-- Extracting xerces-c3-3.2.3: .......... done [131releng-armv7-default-job-13] Extracting gdal-3.5.1_3: .......... done ===== Message from boost-libs-1.80.0: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===== Message from postgresql13-client-13.8: -- The PostgreSQL port has a collection of "side orders": postgresql-docs For all of the html documentation p5-Pg A perl5 API for client access to PostgreSQL databases. postgresql-tcltk If you want tcl/tk client support. postgresql-jdbc For Java JDBC support. postgresql-odbc For client access from unix applications using ODBC as access method. Not needed to access unix PostgreSQL servers from Win32 using ODBC. See below. ruby-postgres, py-psycopg2 For client access to PostgreSQL databases using the ruby & python languages. postgresql-plperl, postgresql-pltcl & postgresql-plruby For using perl5, tcl & ruby as procedural languages. postgresql-contrib Lots of contributed utilities, postgresql functions and datatypes. There you find pg_standby, pgcrypto and many other cool things. etc... ===> R-cran-rgdal-1.5.32_1 depends on shared library: libgdal.so - found (/usr/local/lib/libgdal.so) ===> Returning to build of R-cran-rgdal-1.5.32_1 ===> R-cran-rgdal-1.5.32_1 depends on shared library: libproj.so - found (/usr/local/lib/libproj.so) =========================================================================== =======================<phase: configure >============================ ===> Configuring for R-cran-rgdal-1.5.32_1 =========================================================================== =======================<phase: build >============================ =========================================================================== =======================<phase: run-depends >============================ ===> R-cran-rgdal-1.5.32_1 depends on package: R-cran-sp>=1.1.0 - found ===> R-cran-rgdal-1.5.32_1 depends on file: /usr/local/bin/R - found ===> R-cran-rgdal-1.5.32_1 depends on executable: gfortran11 - found =========================================================================== =======================<phase: stage >============================ ===> Staging for R-cran-rgdal-1.5.32_1 ===> Generating temporary packing list * installing *source* package 'rgdal' ... ** package 'rgdal' successfully unpacked and MD5 sums checked ** using staged installation configure: R_HOME: /usr/local/lib/R configure: CC: cc configure: CXX: c++ configure: CFLAGS: -O2 -pipe -fstack-protector-strong -fno-strict-aliasing configure: CPPFLAGS: configure: CXXFLAGS: -O2 -pipe -fstack-protector-strong -fno-strict-aliasing configure: LDFLAGS: -Wl,-rpath=/usr/local/lib/gcc11 -L/usr/local/lib/gcc11 -B/usr/local/bin -fstack-protector-strong configure: LDFLAGS: -Wl,-rpath=/usr/local/lib/gcc11 -L/usr/local/lib/gcc11 -B/usr/local/bin -fstack-protector-strong configure: CXX11 is: c++, CXX11STD is: -std=gnu++11 configure: CXX is: c++ -std=gnu++11 configure: C++11 support available configure: rgdal: 1.5-32 checking for /usr/bin/svnversion... no configure: svn revision: 1176 checking for gdal-config... /usr/local/bin/gdal-config checking gdal-config usability... yes configure: GDAL: 3.5.1 checking GDAL version >= 1.11.4... yes checking GDAL version <= 2.5 or >= 3.0... yes checking GDAL: linking with --libs only... yes checking GDAL: gdal-config data directory readable... yes checking GDAL: /usr/local/share/gdal/stateplane.csv readable... yes configure: pkg-config proj exists, will use it configure: PROJ version: 8.2.1 configure: PROJ CPP flags: -DPROJ_H_API -I/usr/local/include configure: PROJ LIBS: -L/usr/local/lib -lproj checking PROJ header API:... yes checking whether the C++ compiler works... no configure: error: in `/wrkdirs/usr/ports/graphics/R-cran-rgdal/work/rgdal': configure: error: C++ compiler cannot create executables See `config.log' for more details ERROR: configuration failed for package 'rgdal' * removing '/wrkdirs/usr/ports/graphics/R-cran-rgdal/work/stage/usr/local/lib/R/library/rgdal' *** Error code 1 Stop. make: stopped in /usr/ports/graphics/R-cran-rgdal