[package - 123arm64-quarterly][biology/molden] Failed for molden-6.7,1 in build
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Date: Fri, 09 Sep 2022 04:31:05 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: jmd@FreeBSD.org
Log URL: http://ampere1.nyi.freebsd.org/data/123arm64-quarterly/e89ee108b56b/logs/molden-6.7,1.log
Build URL: http://ampere1.nyi.freebsd.org/build.html?mastername=123arm64-quarterly&build=e89ee108b56b
Log:
=>> Building biology/molden
build started at Fri Sep 9 04:29:08 UTC 2022
port directory: /usr/ports/biology/molden
package name: molden-6.7,1
building for: FreeBSD 123arm64-quarterly-job-08 12.3-RELEASE-p7 FreeBSD 12.3-RELEASE-p7 arm64
maintained by: jmd@FreeBSD.org
Makefile ident:
Poudriere version: 3.2.8-21-g883afb07
Host OSVERSION: 1400063
Jail OSVERSION: 1203000
Job Id: 08
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MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for molden-6.7,1:
DATA=on: Install data files
DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
jmd@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
F77="gfortran11" FC="gfortran11" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc11 -fallow-argument-mismatch" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc11" MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/molden/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/molden/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/molden/work/.cache HOME=/wrkdirs/usr/ports/biology/molden/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/molden/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/molden/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
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/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -DFREEBSD -DDOBACK -DHASTIMER -DCOLOR_OFFSET=0.0 -I/usr/local/include -Wno-return-type -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc11 -L/usr/local/lib/gcc11 -B/usr/local/bin -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -DFREEBSD -DDOBACK -DHASTIMER -DCOLOR_OFFSET=0.0 -I/usr/local/include -Wno-return-type -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
PORTDOCS="" OSREL=12.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/molden" EXAMPLESDIR="share/examples/molden" DATADIR="share/molden" WWWDIR="www/molden" ETCDIR="etc/molden"
--End PLIST_SUB--
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PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/molden DOCSDIR=/usr/local/share/doc/molden EXAMPLESDIR=/usr/local/share/examples/molden WWWDIR=/usr/local/www/molden ETCDIR=/usr/local/etc/molden
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max memory size (kbytes, -m) unlimited
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max user processes (-u) 89999
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--End resource limits--
=======================<phase: check-sanity >============================
===> License Molden accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> molden-6.7,1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.18.3.pkg
[123arm64-quarterly-job-08] Installing pkg-1.18.3...
[123arm64-quarterly-job-08] Extracting pkg-1.18.3: .......... done
===> molden-6.7,1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of molden-6.7,1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License Molden accepted by the user
===> Fetching all distfiles required by molden-6.7,1 for building
===========================================================================
=======================<phase: checksum >============================
===> License Molden accepted by the user
===> Fetching all distfiles required by molden-6.7,1 for building
=> SHA256 Checksum OK for molden6.7.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License Molden accepted by the user
===> Fetching all distfiles required by molden-6.7,1 for building
===> Extracting for molden-6.7,1
=> SHA256 Checksum OK for molden6.7.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for molden-6.7,1
===> Applying FreeBSD patches for molden-6.7,1 from /usr/ports/biology/molden/files
===========================================================================
=======================<phase: build-depends >============================
===> molden-6.7,1 depends on executable: makedepend - not found
===> Installing existing package /packages/All/makedepend-1.0.6,1.pkg
[123arm64-quarterly-job-08] Installing makedepend-1.0.6,1...
[123arm64-quarterly-job-08] Extracting makedepend-1.0.6,1: ..... done
===> molden-6.7,1 depends on executable: makedepend - found
===> Returning to build of molden-6.7,1
===> molden-6.7,1 depends on executable: gfortran11 - not found
===> Installing existing package /packages/All/gcc11-11.3.0.pkg
[123arm64-quarterly-job-08] Installing gcc11-11.3.0...
[123arm64-quarterly-job-08] `-- Installing binutils-2.37_2,1...
[123arm64-quarterly-job-08] | `-- Installing gettext-runtime-0.21...
[123arm64-quarterly-job-08] | | `-- Installing indexinfo-0.3.1...
[123arm64-quarterly-job-08] | | `-- Extracting indexinfo-0.3.1: .... done
[123arm64-quarterly-job-08] | `-- Extracting gettext-runtime-0.21: .......... done
[123arm64-quarterly-job-08] `-- Extracting binutils-2.37_2,1: .......... done
[123arm64-quarterly-job-08] `-- Installing gmp-6.2.1...
[123arm64-quarterly-job-08] `-- Extracting gmp-6.2.1: .......... done
<snip>
rdpld_(&hlpsrf->nps1,&hlpsrf->nps2,&hlpsrf->nps3,&SEVENTYSEVEN,&istat,
^
src/xwin.c:91964:3: warning: implicit declaration of function 'filclo_' is invalid in C99 [-Wimplicit-function-declaration]
filclo_(&SEVENTYSEVEN);
^
src/xwin.c:91997:2: warning: implicit declaration of function 'rdpld_' is invalid in C99 [-Wimplicit-function-declaration]
rdpld_(&hlpsrf->nps1,&hlpsrf->nps2,&hlpsrf->nps3,&SEVENTYSEVEN,&istat,
^
src/xwin.c:92260:3: warning: implicit declaration of function 'cpkeyw_' is invalid in C99 [-Wimplicit-function-declaration]
cpkeyw_();
^
src/xwin.c:92261:3: warning: implicit declaration of function 'filop_' is invalid in C99 [-Wimplicit-function-declaration]
filop_(&SEVENTYSEVEN,&ONE,&ONE,&ZERO,&ierr);
^
src/xwin.c:92287:3: warning: implicit declaration of function 'cubtst_' is invalid in C99 [-Wimplicit-function-declaration]
cubtst_(&SEVENTYSEVEN,&ijag);
^
src/xwin.c:92298:2: warning: implicit declaration of function 'rdpld_' is invalid in C99 [-Wimplicit-function-declaration]
rdpld_(&hlpsrf->nps1,&hlpsrf->nps2,&hlpsrf->nps3,&SEVENTYSEVEN,&istat,
^
src/xwin.c:92311:3: warning: implicit declaration of function 'filclo_' is invalid in C99 [-Wimplicit-function-declaration]
filclo_(&SEVENTYSEVEN);
^
src/xwin.c:92343:2: warning: implicit declaration of function 'rdpld_' is invalid in C99 [-Wimplicit-function-declaration]
rdpld_(&hlpsrf->nps1,&hlpsrf->nps2,&hlpsrf->nps3,&SEVENTYSEVEN,&istat,
^
src/xwin.c:92546:3: warning: implicit declaration of function 'cpkeyw_' is invalid in C99 [-Wimplicit-function-declaration]
cpkeyw_();
^
src/xwin.c:92547:3: warning: implicit declaration of function 'filop_' is invalid in C99 [-Wimplicit-function-declaration]
filop_(&SEVENTYSEVEN,&ONE,&ONE,&ZERO,&ierr);
^
src/xwin.c:92563:3: warning: implicit declaration of function 'cubtst_' is invalid in C99 [-Wimplicit-function-declaration]
cubtst_(&SEVENTYSEVEN,&ijag);
^
src/xwin.c:92574:2: warning: implicit declaration of function 'rdpld_' is invalid in C99 [-Wimplicit-function-declaration]
rdpld_(&hlpsrf->nps1,&hlpsrf->nps2,&hlpsrf->nps3,&SEVENTYSEVEN,&istat,
^
src/xwin.c:92587:3: warning: implicit declaration of function 'filclo_' is invalid in C99 [-Wimplicit-function-declaration]
filclo_(&SEVENTYSEVEN);
^
src/xwin.c:92615:2: warning: implicit declaration of function 'rdpld_' is invalid in C99 [-Wimplicit-function-declaration]
rdpld_(&hlpsrf->nps1,&hlpsrf->nps2,&hlpsrf->nps3,&SEVENTYSEVEN,&istat,
^
682 warnings generated.
gmake -C src/ambfor FC=gfortran11 LDR="gfortran11 " EXT="" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc11 -fallow-argument-mismatch"
gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/molden/work/molden6.7/src/ambfor'
gfortran11 -c -g -ffast-math -funroll-loops -o ambfor.o ambfor.f
gfortran11 -O -Wl,-rpath=/usr/local/lib/gcc11 -fallow-argument-mismatch -c -o qvdw.o qvdw.f
cc -c -g -Wno-implicit-function-declaration -c alloc.c -o alloc.o
gfortran11 -O -Wl,-rpath=/usr/local/lib/gcc11 -fallow-argument-mismatch -c -o optimise.o optimise.f
gfortran11 -O -Wl,-rpath=/usr/local/lib/gcc11 -fallow-argument-mismatch -c -o lbfgs.o lbfgs.f
gfortran11 -O -Wl,-rpath=/usr/local/lib/gcc11 -fallow-argument-mismatch -c -o angle.o angle.f
gfortran11 -O -Wl,-rpath=/usr/local/lib/gcc11 -fallow-argument-mismatch -c -o bond.o bond.f
gfortran11 -O -Wl,-rpath=/usr/local/lib/gcc11 -fallow-argument-mismatch -c -o charge.o charge.f
gfortran11 -O -Wl,-rpath=/usr/local/lib/gcc11 -fallow-argument-mismatch -c -o conn.o conn.f
gfortran11 -O -Wl,-rpath=/usr/local/lib/gcc11 -fallow-argument-mismatch -c -o enegrd.o enegrd.f
gfortran11 -O -Wl,-rpath=/usr/local/lib/gcc11 -fallow-argument-mismatch -c -o getinp.o getinp.f
772 warnings generated.
gmake -C src/ambfor ambmd FC=gfortran11 LDR="gfortran11 " EXT="" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc11 -fallow-argument-mismatch" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc11 -fallow-argument-mismatch"
gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/molden/work/molden6.7/src/ambfor'
gfortran11 -O -Wl,-rpath=/usr/local/lib/gcc11 -fallow-argument-mismatch -c -o md.o md.f
gfortran11 -O -Wl,-rpath=/usr/local/lib/gcc11 -fallow-argument-mismatch -c -o param.o param.f
gfortran11 -O -Wl,-rpath=/usr/local/lib/gcc11 -fallow-argument-mismatch -c -o verlet.o verlet.f
param.f:15697:20:
15694 | call parptr(0,coo,fdum,idum)
| 2
.....
15697 | call parptr(2,fdum,fdum,iatoms)
| 1
Warning: Rank mismatch between actual argument at (1) and actual argument at (2) (rank-1 and scalar)
param.f:15699:20:
15694 | call parptr(0,coo,fdum,idum)
| 2
.....
15699 | call parptr(4,fdum,fdum,mxnat)
| 1
Warning: Rank mismatch between actual argument at (1) and actual argument at (2) (rank-1 and scalar)
param.f:15700:20:
15694 | call parptr(0,coo,fdum,idum)
| 2
.....
15700 | call parptr(5,fdum,fdum,iwesc)
| 1
Warning: Rank mismatch between actual argument at (1) and actual argument at (2) (rank-1 and scalar)
cc -c -g -Wno-implicit-function-declaration -DMD -c alloc.c -o allocmd.o
gfortran11 -O -Wl,-rpath=/usr/local/lib/gcc11 -fallow-argument-mismatch -c -o tors.o tors.f
gfortran11 -O -Wl,-rpath=/usr/local/lib/gcc11 -fallow-argument-mismatch -c -o param.o param.f
param.f:15697:20:
15694 | call parptr(0,coo,fdum,idum)
| 2
.....
15697 | call parptr(2,fdum,fdum,iatoms)
| 1
Warning: Rank mismatch between actual argument at (1) and actual argument at (2) (rank-1 and scalar)
param.f:15699:20:
15694 | call parptr(0,coo,fdum,idum)
| 2
.....
15699 | call parptr(4,fdum,fdum,mxnat)
| 1
Warning: Rank mismatch between actual argument at (1) and actual argument at (2) (rank-1 and scalar)
param.f:15700:20:
15694 | call parptr(0,coo,fdum,idum)
| 2
.....
15700 | call parptr(5,fdum,fdum,iwesc)
| 1
Warning: Rank mismatch between actual argument at (1) and actual argument at (2) (rank-1 and scalar)
gfortran11 -O -Wl,-rpath=/usr/local/lib/gcc11 -fallow-argument-mismatch -c -o vdwlj.o vdwlj.f
gfortran11 -O -Wl,-rpath=/usr/local/lib/gcc11 -fallow-argument-mismatch -c -o math.o math.f
gfortran11 -O -Wl,-rpath=/usr/local/lib/gcc11 -fallow-argument-mismatch -c -o tors.o tors.f
gfortran11 -O -Wl,-rpath=/usr/local/lib/gcc11 -fallow-argument-mismatch -c -o switch.o switch.f
gfortran11 -O -Wl,-rpath=/usr/local/lib/gcc11 -fallow-argument-mismatch -c -o wrtout.o wrtout.f
gfortran11 -O -Wl,-rpath=/usr/local/lib/gcc11 -fallow-argument-mismatch -c -o math.o math.f
gfortran11 -O -Wl,-rpath=/usr/local/lib/gcc11 -fallow-argument-mismatch -c -o wrtout.o wrtout.f
gfortran11 -O -Wl,-rpath=/usr/local/lib/gcc11 -fallow-argument-mismatch -c -o pbc.o pbc.f
gfortran11 -O -Wl,-rpath=/usr/local/lib/gcc11 -fallow-argument-mismatch -c -o pbc.o pbc.f
gfortran11 -O -Wl,-rpath=/usr/local/lib/gcc11 -fallow-argument-mismatch -c -o bsolv.o bsolv.f
gfortran11 -o ambfor ambfor.o qvdw.o alloc.o optimise.o lbfgs.o angle.o bond.o charge.o conn.o enegrd.o getinp.o param.o tors.o vdwlj.o math.o switch.o wrtout.o pbc.o bsolv.o -lm
gfortran11 -O -Wl,-rpath=/usr/local/lib/gcc11 -fallow-argument-mismatch -c -o bsolv.o bsolv.f
/usr/local/bin/ld: ambfor.o: in function `MAIN__':
/wrkdirs/usr/ports/biology/molden/work/molden6.7/src/ambfor/ambfor.f:476: undefined reference to `allbox_'
/usr/local/bin/ld: /wrkdirs/usr/ports/biology/molden/work/molden6.7/src/ambfor/ambfor.f:484: undefined reference to `initxp_'
/usr/local/bin/ld: qvdw.o: in function `qvdwd_':
qvdw.f:(.text+0x4b4): undefined reference to `rddisr_'
/usr/local/bin/ld: qvdw.o: in function `qvdwdd_':
qvdw.f:(.text+0xc98): undefined reference to `reddis_'
/usr/local/bin/ld: qvdw.o: in function `qvd_':
qvdw.f:(.text+0x1038): undefined reference to `setfrac_'
/usr/local/bin/ld: qvdw.f:(.text+0x1460): undefined reference to `expfr_'
/usr/local/bin/ld: qvdw.f:(.text+0x14bc): undefined reference to `adcldr_'
/usr/local/bin/ld: qvdw.f:(.text+0x161c): undefined reference to `adcldr_'
/usr/local/bin/ld: qvdw.f:(.text+0x16e4): undefined reference to `xpfr_'
/usr/local/bin/ld: qvdw.o: in function `qenvdd_':
qvdw.f:(.text+0x1fc4): undefined reference to `reddis_'
/usr/local/bin/ld: qvdw.o: in function `qvnod_':
qvdw.f:(.text+0x260c): undefined reference to `reddis_'
/usr/local/bin/ld: qvdw.f:(.text+0x2928): undefined reference to `reddis_'
/usr/local/bin/ld: qvdw.o: in function `watcnd_':
qvdw.f:(.text+0x313c): undefined reference to `reddis_'
/usr/local/bin/ld: qvdw.o: in function `watlsd_':
qvdw.f:(.text+0x3240): undefined reference to `reddis_'
/usr/local/bin/ld: qvdw.o:qvdw.f:(.text+0x33a4): more undefined references to `reddis_' follow
/usr/local/bin/ld: alloc.o: in function `makbox_':
/wrkdirs/usr/ports/biology/molden/work/molden6.7/src/ambfor/alloc.c:(.text+0x58b8): undefined reference to `makbod_'
/usr/local/bin/ld: /wrkdirs/usr/ports/biology/molden/work/molden6.7/src/ambfor/alloc.c:(.text+0x58bc): undefined reference to `makbod_'
/usr/local/bin/ld: alloc.o: in function `filbox_':
/wrkdirs/usr/ports/biology/molden/work/molden6.7/src/ambfor/alloc.c:(.text+0x58f0): undefined reference to `filbod_'
/usr/local/bin/ld: /wrkdirs/usr/ports/biology/molden/work/molden6.7/src/ambfor/alloc.c:(.text+0x58f4): undefined reference to `filbod_'
/usr/local/bin/ld: alloc.o: in function `cntwat_':
/wrkdirs/usr/ports/biology/molden/work/molden6.7/src/ambfor/alloc.c:(.text+0x59cc): undefined reference to `cntwad_'
/usr/local/bin/ld: /wrkdirs/usr/ports/biology/molden/work/molden6.7/src/ambfor/alloc.c:(.text+0x59d0): undefined reference to `cntwad_'
/usr/local/bin/ld: alloc.o: in function `appbnx_':
/wrkdirs/usr/ports/biology/molden/work/molden6.7/src/ambfor/alloc.c:(.text+0x63a8): undefined reference to `appbnd_'
/usr/local/bin/ld: /wrkdirs/usr/ports/biology/molden/work/molden6.7/src/ambfor/alloc.c:(.text+0x63ac): undefined reference to `appbnd_'
/usr/local/bin/ld: angle.o: in function `angle_':
angle.f:(.text+0x12dc): undefined reference to `reddis_'
/usr/local/bin/ld: angle.f:(.text+0x12e4): undefined reference to `reddis_'
/usr/local/bin/ld: bond.o: in function `bond_':
bond.f:(.text+0x62c): undefined reference to `reddis_'
/usr/local/bin/ld: charge.o: in function `charge_':
charge.f:(.text+0xf34): undefined reference to `reddis_'
/usr/local/bin/ld: enegrd.o: in function `enegdd_':
enegrd.f:(.text+0x274): undefined reference to `var2cl_'
/usr/local/bin/ld: enegrd.f:(.text+0x76c): undefined reference to `grd2var_'
/usr/local/bin/ld: enegrd.f:(.text+0x788): undefined reference to `getcel_'
/usr/local/bin/ld: getinp.o: in function `getind_':
getinp.f:(.text+0xc0c): undefined reference to `setop_'
/usr/local/bin/ld: getinp.f:(.text+0x1190): undefined reference to `appbnd_'
/usr/local/bin/ld: vdwlj.o: in function `vdwlj_':
vdwlj.f:(.text+0x47c): undefined reference to `reddis_'
/usr/local/bin/ld: switch.o: in function `bldlsd_':
switch.f:(.text+0x300): undefined reference to `reddis_'
/usr/local/bin/ld: wrtout.o: in function `wrtoud_':
wrtout.f:(.text+0x310): undefined reference to `getcel_'
/usr/local/bin/ld: wrtout.o: in function `wrtbid_':
wrtout.f:(.text+0xc58): undefined reference to `getcel_'
collect2: error: ld returned 1 exit status
gmake[2]: *** [makefile:53: ambfor] Error 1
gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/molden/work/molden6.7/src/ambfor'
gmake[1]: *** [makefile:309: ambfor/ambfor] Error 2
gmake[1]: *** Waiting for unfinished jobs....
gfortran11 -o ambmd md.o verlet.o qvdw.o allocmd.o angle.o bond.o charge.o conn.o enegrd.o getinp.o param.o tors.o vdwlj.o math.o switch.o wrtout.o pbc.o bsolv.o -lm
gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/molden/work/molden6.7/src/ambfor'
mv src/ambfor/ambmd bin/ambmd
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/molden/work/molden6.7'
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/molden