From nobody Fri Sep 02 06:08:18 2022 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4MJnXM2MrGz4ZmF7 for ; Fri, 2 Sep 2022 06:08:19 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4MJnXM0KZ2z3XPs; Fri, 2 Sep 2022 06:08:19 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from ampere2.nyi.freebsd.org (ampere2.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:24]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4MJnXL6B2Gzk0b; Fri, 2 Sep 2022 06:08:18 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from ampere2.nyi.freebsd.org (localhost [127.0.0.1]) by ampere2.nyi.freebsd.org (8.16.1/8.16.1) with ESMTP id 28268I9t029457; Fri, 2 Sep 2022 06:08:18 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by ampere2.nyi.freebsd.org (8.16.1/8.16.1/Submit) id 28268Ipu029456; Fri, 2 Sep 2022 06:08:18 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Fri, 2 Sep 2022 06:08:18 GMT From: pkg-fallout@FreeBSD.org Message-Id: <202209020608.28268Ipu029456@ampere2.nyi.freebsd.org> To: tota@FreeBSD.org Subject: [package - main-arm64-default][math/R-cran-sf] Failed for R-cran-sf-1.0.8_1 in stage/runaway Cc: pkg-fallout@FreeBSD.org ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1662098899; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc; bh=Npq0ykJAFm0XVE+tCVEO/Db7qItMtIgnRdJBn/cf6Vw=; b=fF3RiAOKzuH+IsUAz+qBpOShKa8NgUC6HT6wjWZrb1nbxY80YCh6tt4aXUXnjoK/XgfW8L Z6De60pm8G6RMmnhEYpdU5dGfzLJVFrkwk7kZMnB9zP3qtSyc55siaXQHnGyZa1DiVplhk kQPly/McXY7ZxoHP3ApKFcoHDWc4oo9BOIhVp+slAEavxJYrJv/DqY4369cxY7iwKbMItg Jm2E9bVVRN0UWSQorV49qBCVQv8GzlzoKMWOEL2KSEmOS6i835Z+jKfDzhKvrRk+bdMlSm 8zTJhTp4fyO1Td/Do3rBEkk/Rvou3Dw9I0oGh1Sip7IZxeS4lCUn1b9wCAEtEg== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1662098899; a=rsa-sha256; cv=none; b=HrA+5ZzBWyfEFB8LQ1Nx0CBCcQCf4c2D3GzzQpU8OsRkrpjZi3JKyLWidn1FkRahnqi42L Z0lTC2HtCtCJXO7nkWi91wuDHrZm0d3gL1yMEsqEh5n48hR9eJarphB7cvpIsifbocM4He XxvPPIy2U3wWipEmjChOqiNbyQGZumVffhTln+X9QkC6+Y+gmrjRsYaIOvThNbxl0QoUBa f4Hn+mOSrNf3dCspmxjDXyG4RSez15Uv1WyYFH2CZaVIgzZaDWZb8FG3zp2wS6n3Msc/bz xFgO9ODR9Aw3hz6RIgWiYhutNGWlhrVh/QjH2jnDEvWYE8AH1WVerl0xwH1uNA== ARC-Authentication-Results: i=1; mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: tota@FreeBSD.org Log URL: http://ampere2.nyi.freebsd.org/data/main-arm64-default/p1774365e01b3_sf46bea05fe/logs/R-cran-sf-1.0.8_1.log Build URL: http://ampere2.nyi.freebsd.org/build.html?mastername=main-arm64-default&build=p1774365e01b3_sf46bea05fe Log: =>> Building math/R-cran-sf build started at Fri Sep 2 03:55:54 UTC 2022 port directory: /usr/ports/math/R-cran-sf package name: R-cran-sf-1.0.8_1 building for: FreeBSD main-arm64-default-job-03 14.0-CURRENT FreeBSD 14.0-CURRENT 1400066 arm64 maintained by: tota@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-21-g883afb07 Host OSVERSION: 1400063 Jail OSVERSION: 1400066 Job Id: 03 !!! Jail is newer than host. (Jail: 1400066, Host: 1400063) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/sh OSVERSION=1400066 UNAME_v=FreeBSD 14.0-CURRENT 1400066 UNAME_r=14.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-21-g883afb07 MASTERMNT=/usr/local/poudriere/data/.m/main-arm64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/main-arm64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=main-arm64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/main-arm64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- tota@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- "--with-proj-api=yes" --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran11" FC="gfortran11" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc11" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc11" PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/math/R-cran-sf/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/R-cran-sf/work XDG_CACHE_HOME=/wrkdirs/usr/ports/math/R-cran-sf/work/.cache HOME=/wrkdirs/usr/ports/math/R-cran-sf/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/R-cran-sf/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/math/R-cran-sf/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran11" FC="gfortran11" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc11" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc11" XDG_DATA_HOME=/wrkdirs/usr/ports/math/R-cran-sf/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/R-cran-sf/work XDG_CACHE_HOME=/wrkdirs/usr/ports/math/R-cran-sf/work/.cache HOME=/wrkdirs/usr/ports/math/R-cran-sf/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/R-cran-sf/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/math/R-cran-sf/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/loca l/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc11 -L/usr/local/lib/gcc11 -B/usr/local/bin -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- R_MOD_DIR=lib/R/library/sf OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/sf" EXAMPLESDIR="share/examples/sf" DATADIR="share/sf" WWWDIR="www/sf" ETCDIR="etc/sf" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/sf DOCSDIR=/usr/local/share/doc/sf EXAMPLESDIR=/usr/local/share/examples/sf WWWDIR=/usr/local/www/sf ETCDIR=/usr/local/etc/sf --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc12386ae247c) Target: aarch64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc12386ae247c) Target: aarch64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc12386ae247c) Target: aarch64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=aarch64 OPSYS=FreeBSD _OSRELEASE=14.0-CURRENT OSREL=14.0 OSVERSION=1400066 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 1048576 stack size (kbytes, -s) 1048576 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License GPLv2 MIT accepted by the user =========================================================================== =================================================== ===> R-cran-sf-1.0.8_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.18.4.pkg [main-arm64-default-job-03] Installing pkg-1.18.4... [main-arm64-default-job-03] Extracting pkg-1.18.4: .......... done ===> R-cran-sf-1.0.8_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of R-cran-sf-1.0.8_1 =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv2 MIT accepted by the user ===> Fetching all distfiles required by R-cran-sf-1.0.8_1 for building =========================================================================== =================================================== ===> License GPLv2 MIT accepted by the user ===> Fetching all distfiles required by R-cran-sf-1.0.8_1 for building => SHA256 Checksum OK for sf_1.0-8.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv2 MIT accepted by the user ===> Fetching all distfiles required by R-cran-sf-1.0.8_1 for building ===> Extracting for R-cran-sf-1.0.8_1 => SHA256 Checksum OK for sf_1.0-8.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for R-cran-sf-1.0.8_1 =========================================================================== =================================================== ===> R-cran-sf-1.0.8_1 depends on package: R-cran-classInt>=0.4.1 - not found ===> Installing existing package /packages/All/R-cran-classInt-0.4.7.pkg [main-arm64-default-job-03] Installing R-cran-classInt-0.4.7... [main-arm64-default-job-03] `-- Installing R-4.2.1... [main-arm64-default-job-03] | `-- Installing cairo-1.17.4_1,3... [main-arm64-default-job-03] | | `-- Installing fontconfig-2.13.94_2,1... [main-arm64-default-job-03] | | `-- Installing expat-2.4.8... [main-arm64-default-job-03] | | `-- Extracting expat-2.4.8: .......... done [main-arm64-default-job-03] | | `-- Installing freetype2-2.12.1_2... [main-arm64-default-job-03] | | | `-- Installing brotli-1.0.9,1... [main-arm64-default-job-03] | `-- Installing uriparser-0.9.6... [main-arm64-default-job-03] | `-- Extracting uriparser-0.9.6: .......... done [main-arm64-default-job-03] `-- Extracting libkml-1.3.0_24: .......... done [main-arm64-default-job-03] `-- Installing netcdf-4.9.0_1... [main-arm64-default-job-03] `-- Extracting netcdf-4.9.0_1: .......... done [main-arm64-default-job-03] `-- Installing poppler-22.08.0_1... [main-arm64-default-job-03] | `-- Installing nspr-4.34.1... [main-arm64-default-job-03] | `-- Extracting nspr-4.34.1: .......... done [main-arm64-default-job-03] | `-- Installing nss-3.82... [main-arm64-default-job-03] | `-- Extracting nss-3.82: .......... done [main-arm64-default-job-03] `-- Extracting poppler-22.08.0_1: .......... done [main-arm64-default-job-03] `-- Installing postgresql13-client-13.8... [main-arm64-default-job-03] `-- Extracting postgresql13-client-13.8: .......... done [main-arm64-default-job-03] `-- Installing qhull-8.0.2_1,1... [main-arm64-default-job-03] `-- Extracting qhull-8.0.2_1,1: .......... done [main-arm64-default-job-03] `-- Installing sfcgal-1.4.1_2... [main-arm64-default-job-03] `-- Extracting sfcgal-1.4.1_2: .......... done [main-arm64-default-job-03] `-- Installing spatialite-5.0.1_2... [main-arm64-default-job-03] | `-- Installing librttopo-1.1.0... [main-arm64-default-job-03] | `-- Extracting librttopo-1.1.0: .......... done [main-arm64-default-job-03] `-- Extracting spatialite-5.0.1_2: .......... done [main-arm64-default-job-03] `-- Installing webp-1.2.4... [main-arm64-default-job-03] `-- Extracting webp-1.2.4: .......... done [main-arm64-default-job-03] `-- Installing xerces-c3-3.2.3... [main-arm64-default-job-03] `-- Extracting xerces-c3-3.2.3: .......... done [main-arm64-default-job-03] Extracting gdal-3.5.1_3: .......... done ===== Message from boost-libs-1.80.0: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===== Message from postgresql13-client-13.8: -- The PostgreSQL port has a collection of "side orders": postgresql-docs For all of the html documentation p5-Pg A perl5 API for client access to PostgreSQL databases. postgresql-tcltk If you want tcl/tk client support. postgresql-jdbc For Java JDBC support. postgresql-odbc For client access from unix applications using ODBC as access method. Not needed to access unix PostgreSQL servers from Win32 using ODBC. See below. ruby-postgres, py-psycopg2 For client access to PostgreSQL databases using the ruby & python languages. postgresql-plperl, postgresql-pltcl & postgresql-plruby For using perl5, tcl & ruby as procedural languages. postgresql-contrib Lots of contributed utilities, postgresql functions and datatypes. There you find pg_standby, pgcrypto and many other cool things. etc... ===> R-cran-sf-1.0.8_1 depends on shared library: libgdal.so - found (/usr/local/lib/libgdal.so) ===> Returning to build of R-cran-sf-1.0.8_1 ===> R-cran-sf-1.0.8_1 depends on shared library: libgeos.so - found (/usr/local/lib/libgeos.so) ===> R-cran-sf-1.0.8_1 depends on shared library: libproj.so - found (/usr/local/lib/libproj.so) =========================================================================== =================================================== ===> Configuring for R-cran-sf-1.0.8_1 =========================================================================== =================================================== =========================================================================== =================================================== ===> R-cran-sf-1.0.8_1 depends on package: R-cran-classInt>=0.4.1 - found ===> R-cran-sf-1.0.8_1 depends on package: R-cran-DBI>=0.8 - found ===> R-cran-sf-1.0.8_1 depends on package: R-cran-magrittr>0 - found ===> R-cran-sf-1.0.8_1 depends on package: R-cran-Rcpp>=0.12.18 - found ===> R-cran-sf-1.0.8_1 depends on package: R-cran-s2>=1.0.7 - found ===> R-cran-sf-1.0.8_1 depends on package: R-cran-units>=0.7.0 - found ===> R-cran-sf-1.0.8_1 depends on file: /usr/local/bin/R - found ===> R-cran-sf-1.0.8_1 depends on executable: gfortran11 - found =========================================================================== =================================================== ===> Staging for R-cran-sf-1.0.8_1 ===> Generating temporary packing list * installing *source* package 'sf' ... ** package 'sf' successfully unpacked and MD5 sums checked ** using staged installation configure: CC: cc configure: CXX: c++ checking for gdal-config... /usr/local/bin/gdal-config checking gdal-config usability... yes configure: GDAL: 3.5.1 checking GDAL version >= 2.0.1... yes checking for gcc... cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking how to run the C preprocessor... cpp checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking gdal.h usability... yes checking gdal.h presence... yes checking for gdal.h... yes checking GDAL: linking with --libs only... yes checking GDAL: /usr/local/share/gdal/pcs.csv readable... no checking GDAL: checking whether PROJ is available for linking:... yes checking GDAL: checking whether PROJ is available fur running:... yes configure: GDAL: 3.5.1 configure: pkg-config proj exists, will use it configure: using proj.h. configure: PROJ: 8.2.1 checking PROJ: checking whether PROJ and sqlite3 are available for linking:... yes checking for geos-config... /usr/local/bin/geos-config checking geos-config usability... yes configure: GEOS: 3.11.0 checking GEOS version >= 3.4.0... yes checking geos_c.h usability... yes checking geos_c.h presence... yes checking for geos_c.h... yes checking geos: linking with -L/usr/local/lib -lgeos_c... yes configure: Package CPP flags: -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include configure: Package LIBS: -L/usr/local/lib -lproj -L/usr/local/lib -lgdal -L/usr/local/lib -lgeos_c configure: creating ./config.status config.status: creating src/Makevars ** libs gmake[1]: Entering directory '/wrkdirs/usr/ports/math/R-cran-sf/work/sf/src' c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c RcppExports.cpp -o RcppExports.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c bbox.cpp -o bbox.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c gdal.cpp -o gdal.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c gdal_geom.cpp -o gdal_geom.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c gdal_read.cpp -o gdal_read.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c gdal_utils.cpp -o gdal_utils.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c gdal_write.cpp -o gdal_write.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c geos.cpp -o geos.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c hex.cpp -o hex.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c mdim.cpp -o mdim.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c ops.cpp -o ops.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c polygonize.cpp -o polygonize.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c proj.cpp -o proj.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c proj_info.cpp -o proj_info.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c raster2sf.cpp -o raster2sf.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c sfc-sfg.cpp -o sfc-sfg.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c signed_area.cpp -o signed_area.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c stars.cpp -o stars.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c wkb.cpp -o wkb.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c zm_range.cpp -o zm_range.o c++ -std=gnu++11 -shared -L/usr/local/lib/R/lib -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc11 -L/usr/local/lib/gcc11 -B/usr/local/bin -fstack-protector-strong -o sf.so RcppExports.o bbox.o gdal.o gdal_geom.o gdal_read.o gdal_utils.o gdal_write.o geos.o hex.o mdim.o ops.o polygonize.o proj.o proj_info.o raster2sf.o sfc-sfg.o signed_area.o stars.o wkb.o zm_range.o -L/usr/local/lib -lproj -L/usr/local/lib -lgdal -L/usr/local/lib -lgeos_c -L/usr/local/lib/R/lib -lR gmake[1]: Leaving directory '/wrkdirs/usr/ports/math/R-cran-sf/work/sf/src' installing to /wrkdirs/usr/ports/math/R-cran-sf/work/stage/usr/local/lib/R/library/00LOCK-sf/00new/sf/libs ** R ** demo ** inst ** tests ** byte-compile and prepare package for lazy loading in method for 'dbWriteTable' with signature '"PostgreSQLConnection","character","sf"': no definition for class "PostgreSQLConnection" in method for 'dbDataType' with signature '"PostgreSQLConnection","sf"': no definition for class "PostgreSQLConnection" in method for 'coerce' with signature '"Spatial","sf"': no definition for class "Spatial" in method for 'coerce' with signature '"Spatial","sfc"': no definition for class "Spatial" in method for 'coerce' with signature '"sf","Spatial"': no definition for class "Spatial" in method for 'coerce' with signature '"sfc","Spatial"': no definition for class "Spatial" in method for 'coerce' with signature '"XY","Spatial"': no definition for class "Spatial" in method for 'coerce' with signature '"crs","CRS"': no definition for class "CRS" in method for 'coerce' with signature '"sgbp","sparseMatrix"': no definition for class "sparseMatrix" ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Error: package or namespace load failed for 'sf' in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/wrkdirs/usr/ports/math/R-cran-sf/work/stage/usr/local/lib/R/library/00LOCK-sf/00new/sf/libs/sf.so': /usr/local/lib/libkmlregionator.so.1: Undefined symbol "_ZN14kmlconvenience11FeatureList11RegionSplitERKN5boost13intrusive_ptrIN6kmldom6RegionEEEmPS0_" Error: loading failed ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location =>> Killing runaway build after 7200 seconds with no output