From nobody Mon Oct 17 08:31:21 2022 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4MrVZd6YRDz4fGCk for ; Mon, 17 Oct 2022 08:31:21 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4MrVZd40slz3PbJ; Mon, 17 Oct 2022 08:31:21 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from package19.nyi.freebsd.org (package19.nyi.freebsd.org [IPv6:2610:1c1:1:607e::16:7]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4MrVZd33vczlS8; Mon, 17 Oct 2022 08:31:21 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from package19.nyi.freebsd.org (localhost [127.0.0.1]) by package19.nyi.freebsd.org (8.16.1/8.16.1) with ESMTP id 29H8VLT3036013; Mon, 17 Oct 2022 08:31:21 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by package19.nyi.freebsd.org (8.16.1/8.16.1/Submit) id 29H8VLCN035996; Mon, 17 Oct 2022 08:31:21 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Mon, 17 Oct 2022 08:31:21 GMT From: pkg-fallout@FreeBSD.org Message-Id: <202210170831.29H8VLCN035996@package19.nyi.freebsd.org> To: yuri@FreeBSD.org Subject: [exp - 123amd64-default-build-as-user][science/avogadrolibs] Failed for avogadrolibs-1.95.1_3 in build Cc: pkg-fallout@FreeBSD.org ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1665995481; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc; bh=OH2kOfUhZRVXa69k90W+oZXm5507MwmqVuOcj1Si7tM=; b=JjX205oGstljSCplBI0e2V74q86m2i3lGbOvv4G0aKfg1NzUUM4vwj3VTXKXz47zttiIkX EUYusA+qKNBFNTcKsLMkUFK/1zb3WkPj8sP+Of+ytGxq8k2dQp0DbWLps2j8jqR/JwBS/y r24t3q3DQ99cJfXpemyKeT9kiqDHLoiwUsKPxxAOj1wTszpEdQXaTbxT/WgyWPameH05fX TS6uGjaQnzta8DdO6A548qJSPcx+4G9IdIlc12NHCZgbN3YzgrsXUKzYxFNYMIQXFV8W3D Bc0hPoNqTFIOAAFjNADw92afqMk+fIhihX6Ggsa5qnm9oZDee2ydlZHEvPZAMw== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1665995481; a=rsa-sha256; cv=none; b=xwW2pAvjqTmoqbI8KfVq5ZQ80mSo8EcueV130uWgWgOYd3/q9qUYP7KdgLGpHci/3VreiN dWQLp2KEWt4Zc7o8J3RO8krCXFRWDf3ivShOH6vamaqjLnuGY6m1y3e5WiFqyOFlWGctJI W80iUzEvw7BsRRnf0EOFWh8pZgtNLFqUSCmJgtBUtlAgUr0zYRY4nEih/p8nhLmEdmd+ap Zyle6SMk/Ih2a1jPnsmOvrJE92iAiqsSyaphlAjJyEX4S7uYShnP21xhQmxzC8e1FSaWoC lLn2F2wWNe72vwfCEBEEuBPLyuWWjUwA08VISow8oFAS57TgVoK4witZqhyNag== ARC-Authentication-Results: i=1; mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: http://package19.nyi.freebsd.org/data/123amd64-default-build-as-user/da00b9a366e0/logs/avogadrolibs-1.95.1_3.log Build URL: http://package19.nyi.freebsd.org/build.html?mastername=123amd64-default-build-as-user&build=da00b9a366e0 Log: =>> Building science/avogadrolibs build started at Mon Oct 17 08:28:05 UTC 2022 port directory: /usr/ports/science/avogadrolibs package name: avogadrolibs-1.95.1_3 building for: FreeBSD 123amd64-default-build-as-user-job-03 12.3-RELEASE-p7 FreeBSD 12.3-RELEASE-p7 amd64 maintained by: yuri@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-21-g883afb07 Host OSVERSION: 1400050 Jail OSVERSION: 1203000 Job Id: 03 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1203000 UNAME_v=FreeBSD 12.3-RELEASE-p7 UNAME_r=12.3-RELEASE-p7 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-21-g883afb07 MASTERMNT=/poudriere/data/.m/123amd64-default-build-as-user/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= GID=0 UID=0 PWD=/poudriere/data/.m/123amd64-default-build-as-user/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=123amd64-default-build-as-user SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/poudriere/data/.m/123amd64-default-build-as-user/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for avogadrolibs-1.95.1_3: HDF5=off: HDF-5 data format support LIBARCHIVE=on: Enable optional Libarchive features LIBMSYM=on: Enable optional features using libmsym MMTF=on: Enable optional features using mmtf OPENGL=on: 2D/3D rendering support via OpenGL QT5=on: Qt 5 toolkit support SPGLIB=on: Enable optional features using spglib VTK=off: Enable libraries that use VTK ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- QT_SELECT=qt5 QMAKEMODULES="/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/mkspecs/modules:/usr/local/lib/qt5/mkspecs/modules" XDG_DATA_HOME=/wrkdirs/usr/ports/science/avogadrolibs/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/avogadrolibs/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/avogadrolibs/work/.cache HOME=/wrkdirs/usr/ports/science/avogadrolibs/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/avogadrolibs/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/avogadrolibs/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " QT_SELECT=qt5 QMAKEMODULES="/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/mkspecs/modules:/usr/local/lib/qt5/mkspecs/modules" XDG_DATA_HOME=/wrkdirs/usr/ports/science/avogadrolibs/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/avogadrolibs/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/avogadrolibs/work/.cache HOME=/wrkdirs/usr/ports/science/avogadrolibs/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/avogadrolibs/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/avogadrolibs/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/science/avogadrolibs/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPP FLAGS="-isystem /usr/local/include" LDFLAGS=" -fstack-protector-strong " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- HDF5="@comment " NO_HDF5="" LIBARCHIVE="" NO_LIBARCHIVE="@comment " LIBMSYM="" NO_LIBMSYM="@comment " MMTF="" NO_MMTF="@comment " OPENGL="" NO_OPENGL="@comment " QT5="" NO_QT5="@comment " SPGLIB="" NO_SPGLIB="@comment " VTK="@comment " NO_VTK="" CMAKE_BUILD_TYPE="release" QT_BINDIR="lib/qt5/bin" QT_INCDIR="include/qt5" QT_LIBDIR="lib/qt5" QT_ARCHDIR="lib/qt5" QT_PLUGINDIR="lib/qt5/plugins" QT_LIBEXECDIR="libexec/qt5" QT_IMPORTDIR="lib/qt5/imports" QT_QMLDIR="lib/qt5/qml" QT_DATADIR="share/qt5" QT_DOCDIR="share/doc/qt5" QT_L10NDIR="share/qt5/translations" QT_EXAMPLEDIR="share/examples/qt5" QT_TESTDIR="share/qt5/tests" QT_MKSPECDIR="lib/qt5/mkspecs" QT_TOOLDIR="lib/qt5/bin" OSREL=12.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/avogadrolibs" EXAMPLESDIR="share/examples/avogadrolibs" DATADIR="share/avogadrolibs" WWWDIR="www/avogadrolibs" ETCDIR="etc/avogadrolibs" --End PLIST_SUB-- --SUB_LIST-- HDF5="@comment " NO_HDF5="" LIBARCHIVE="" NO_LIBARCHIVE="@comment " LIBMSYM="" NO_LIBMSYM="@comment " MMTF="" NO_MMTF="@comment " OPENGL="" NO_OPENGL="@comment " QT5="" NO_QT5="@comment " SPGLIB="" NO_SPGLIB="@comment " VTK="@comment " NO_VTK="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/avogadrolibs DOCSDIR=/usr/local/share/doc/avogadrolibs EXAMPLESDIR=/usr/local/share/examples/avogadrolibs WWWDIR=/usr/local/www/avogadrolibs ETCDIR=/usr/local/etc/avogadrolibs --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 10.0.1 (git@github.com:llvm/llvm-project.git llvmorg-10.0.1-0-gef32c611aa2) Target: x86_64-unknown-freebsd12.3 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 10.0.1 (git@github.com:llvm/llvm-project.git llvmorg-10.0.1-0-gef32c611aa2) Target: x86_64-unknown-freebsd12.3 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_53255a77=yes CC_OUTPUT_921dbbb2_911cfe02=error: invalid value 'c++2b' in '-std=c++2b' note: use 'c++98' or 'c++03' for 'ISO C++ 1998 with amendments' standard note: use 'gnu++98' or 'gnu++03' for 'ISO C++ 1998 with amendments and GNU extensions' standard note: use 'c++11' for 'ISO C++ 2011 with amendments' standard note: use 'gnu++11' for 'ISO C++ 2011 with amendments and GNU extensions' standard note: use 'c++14' for 'ISO C++ 2014 with amendments' standard note: use 'gnu++14' for 'ISO C++ 2014 with amendments and GNU extensions' standard note: use 'c++17' for 'ISO C++ 2017 with amendments' standard note: use 'gnu++17' for 'ISO C++ 2017 with amendments and GNU extensions' standard note: use 'c++20' for 'ISO C++ 2020 DIS' standard note: use 'gnu++20' for 'ISO C++ 2020 DIS with GNU extensions' standard CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes CC_OUTPUT_921dbbb2_af59ad06=yes CC_OUTPUT_921dbbb2_a15f3fcf=error: invalid value 'gnu++2b' in '-std=gnu++2b' note: use 'c++98' or 'c++03' for 'ISO C++ 1998 with amendments' standard note: use 'gnu++98' or 'gnu++03' for 'ISO C++ 1998 with amendments and GNU extensions' standard note: use 'c++11' for 'ISO C++ 2011 with amendments' standard note: use 'gnu++11' for 'ISO C++ 2011 with amendments and GNU extensions' standard note: use 'c++14' for 'ISO C++ 2014 with amendments' standard note: use 'gnu++14' for 'ISO C++ 2014 with amendments and GNU extensions' standard note: use 'c++17' for 'ISO C++ 2017 with amendments' standard note: use 'gnu++17' for 'ISO C++ 2017 with amendments and GNU extensions' standard note: use 'c++20' for 'ISO C++ 2020 DIS' standard note: use 'gnu++20' for 'ISO C++ 2020 DIS with GNU extensions' standard _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 10.0.1 (git@github.com:llvm/llvm-project.git llvmorg-10.0.1-0-gef32c611aa2) Target: x86_64-unknown-freebsd12.3 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=amd64 OPSYS=FreeBSD _OSRELEASE=12.3-RELEASE-p7 OSREL=12.3 OSVERSION=1203000 PYTHONBASE=/usr/local HAVE_COMPAT_IA32_KERN=YES CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License GPLv2 accepted by the user =========================================================================== =================================================== ===> avogadrolibs-1.95.1_3 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.18.4.pkg [123amd64-default-build-as-user-job-03] Installing pkg-1.18.4... [123amd64-default-build-as-user-job-03] Extracting pkg-1.18.4: .......... done ===> avogadrolibs-1.95.1_3 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of avogadrolibs-1.95.1_3 =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by avogadrolibs-1.95.1_3 for building =========================================================================== =================================================== ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by avogadrolibs-1.95.1_3 for building => SHA256 Checksum OK for OpenChemistry-avogadrolibs-1.95.1_GH0.tar.gz. => SHA256 Checksum OK for OpenChemistry-molecules-b1e16c5_GH0.tar.gz. => SHA256 Checksum OK for OpenChemistry-crystals-c3e2468_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by avogadrolibs-1.95.1_3 for building ===> Extracting for avogadrolibs-1.95.1_3 => SHA256 Checksum OK for OpenChemistry-avogadrolibs-1.95.1_GH0.tar.gz. => SHA256 Checksum OK for OpenChemistry-molecules-b1e16c5_GH0.tar.gz. => SHA256 Checksum OK for OpenChemistry-crystals-c3e2468_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for avogadrolibs-1.95.1_3 ===> Applying FreeBSD patches for avogadrolibs-1.95.1_3 from /usr/ports/science/avogadrolibs/files =========================================================================== =================================================== ===> avogadrolibs-1.95.1_3 depends on package: mmtf-cpp>0 - not found ===> Installing existing package /packages/All/mmtf-cpp-1.1.0.pkg [123amd64-default-build-as-user-job-03] Installing mmtf-cpp-1.1.0... [123amd64-default-build-as-user-job-03] `-- Installing msgpack-3.3.0... [123amd64-default-build-as-user-job-03] `-- Extracting msgpack-3.3.0: .......... done [123amd64-default-build-as-user-job-03] Extracting mmtf-cpp-1.1.0: .......... done Call Stack (most recent call first): cmake/FindSpglib.cmake:15 (find_package_handle_standard_args) avogadro/core/CMakeLists.txt:7 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found SPGLIB: /usr/local/include/spglib -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Found MMTF: /usr/local/include CMake Warning (dev) at /usr/local/share/cmake/Modules/FindOpenGL.cmake:315 (message): Policy CMP0072 is not set: FindOpenGL prefers GLVND by default when available. Run "cmake --help-policy CMP0072" for policy details. Use the cmake_policy command to set the policy and suppress this warning. FindOpenGL found both a legacy GL library: OPENGL_gl_LIBRARY: /usr/local/lib/libGL.so and GLVND libraries for OpenGL and GLX: OPENGL_opengl_LIBRARY: /usr/local/lib/libOpenGL.so OPENGL_glx_LIBRARY: /usr/local/lib/libGLX.so OpenGL_GL_PREFERENCE has not been set to "GLVND" or "LEGACY", so for compatibility with CMake 3.10 and below the legacy GL library will be used. Call Stack (most recent call first): avogadro/rendering/CMakeLists.txt:6 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found OpenGL: /usr/local/lib/libOpenGL.so -- Found GLEW: /usr/local/include -- Found PythonInterp: /usr/local/bin/python3.9 (found suitable version "3.9.14", minimum required is "3") Avogadro Generators not found at /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/../avogadrogenerators! CMake Warning (dev) at /usr/local/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:438 (message): The package name passed to `find_package_handle_standard_args` (LIBARCHIVE) does not match the name of the calling package (LibArchive). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/FindLibArchive.cmake:17 (find_package_handle_standard_args) avogadro/qtplugins/plugindownloader/CMakeLists.txt:3 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found LIBARCHIVE: /usr/local/include msym include dir /usr/local/lib/cmake/libmsym/../../../include CMake Warning (dev) at /usr/local/share/cmake/Modules/FindOpenGL.cmake:315 (message): Policy CMP0072 is not set: FindOpenGL prefers GLVND by default when available. Run "cmake --help-policy CMP0072" for policy details. Use the cmake_policy command to set the policy and suppress this warning. FindOpenGL found both a legacy GL library: OPENGL_gl_LIBRARY: /usr/local/lib/libGL.so and GLVND libraries for OpenGL and GLX: OPENGL_opengl_LIBRARY: /usr/local/lib/libOpenGL.so OPENGL_glx_LIBRARY: /usr/local/lib/libGLX.so OpenGL_GL_PREFERENCE has not been set to "GLVND" or "LEGACY", so for compatibility with CMake 3.10 and below the legacy GL library will be used. Call Stack (most recent call first): avogadro/qtplugins/overlayaxes/CMakeLists.txt:3 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_COLOR_MAKEFILE CMAKE_CXX_FLAGS_DEBUG CMAKE_C_FLAGS_DEBUG CMAKE_MODULE_LINKER_FLAGS CMAKE_VERBOSE_MAKEFILE -- Build files have been written to: /wrkdirs/usr/ports/science/avogadrolibs/work/.build =========================================================================== =================================================== ===> Building for avogadrolibs-1.95.1_3 [ 0% 2/553] /usr/bin/c++ -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT 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/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o -MF avogadro/io/CMak eFiles/AvogadroIO.dir/cjsonformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/cjsonformat.cpp [ 8% 46/553] /usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o -MF avogadro/io/CMakeF iles/AvogadroIO.dir/cmlformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/cmlformat.cpp [ 8% 47/553] /usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/fileformat.cpp.o -MF avogadro/io/CMake Files/AvogadroIO.dir/fileformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/fileformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/fileformat.cpp [ 8% 48/553] /usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/dcdformat.cpp.o -MF avogadro/io/CMakeF iles/AvogadroIO.dir/dcdformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/dcdformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/dcdformat.cpp [ 8% 49/553] /usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o -MF avogadro/i o/CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/fileformatmanager.cpp In file included from /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/fileformatmanager.cpp:29: /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/vaspformat.h:90:8: warning: 'read' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] bool read(std::istream& inStream, Core::Molecule& mol); ^ /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/fileformat.h:126:16: note: overridden virtual function is here virtual bool read(std::istream& in, Core::Molecule& molecule) = 0; ^ In file included from /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/fileformatmanager.cpp:29: /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/vaspformat.h:91:8: warning: 'write' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] bool write(std::ostream& outStream, const Core::Molecule& mol); ^ /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/fileformat.h:134:16: note: overridden virtual function is here virtual bool write(std::ostream& out, const Core::Molecule& molecule) = 0; ^ 2 warnings generated. [ 8% 50/553] /usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o -MF avogadro/io/CM akeFiles/AvogadroIO.dir/gromacsformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/gromacsformat.cpp [ 9% 51/553] /usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o -MF avogadro/io/CMakeF iles/AvogadroIO.dir/mdlformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/mdlformat.cpp [ 9% 52/553] /usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o -MF avogadro/io/CMake Files/AvogadroIO.dir/vaspformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/vaspformat.cpp In file included from /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/vaspformat.cpp:17: /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/vaspformat.h:90:8: warning: 'read' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] bool read(std::istream& inStream, Core::Molecule& mol); ^ /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/fileformat.h:126:16: note: overridden virtual function is here virtual bool read(std::istream& in, Core::Molecule& molecule) = 0; ^ In file included from /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/vaspformat.cpp:17: /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/vaspformat.h:91:8: warning: 'write' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] bool write(std::ostream& outStream, const Core::Molecule& mol); ^ /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/fileformat.h:134:16: note: overridden virtual function is here virtual bool write(std::ostream& out, const Core::Molecule& molecule) = 0; ^ 2 warnings generated. 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/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/xyzformat.cpp.o -MF avogadro/io/CMakeF iles/AvogadroIO.dir/xyzformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/xyzformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/xyzformat.cpp [ 9% 56/553] /usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/lammpsformat.cpp.o -MF avogadro/io/CMa keFiles/AvogadroIO.dir/lammpsformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/lammpsformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/lammpsformat.cpp [ 10% 57/553] /usr/bin/c++ -DAvogadroQuantumIO_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/io -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/quantumio -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/gamessus.cpp.o -MF avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/gamessus.cpp.o.d -o avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/g amessus.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/quantumio/gamessus.cpp [ 10% 58/553] /usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o -MF avogadro/io/CMake Files/AvogadroIO.dir/mmtfformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/mmtfformat.cpp FAILED: avogadro/io/CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o /usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o -MF avogadro/io/CMakeFiles/Avogadro IO.dir/mmtfformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/mmtfformat.cpp /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/mmtfformat.cpp:105:22: error: call to 'is_polymer' is ambiguous bool isPolymer = is_polymer(chainIndex, entityList); ^~~~~~~~~~ /usr/local/include/mmtf/structure_data.hpp:432:6: note: candidate function bool is_polymer(const unsigned int chain_index, ^ /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/mmtfformat.cpp:47:6: note: candidate function bool is_polymer(const unsigned int chain_index, ^ 1 error generated. [ 10% 58/553] /usr/bin/c++ -DAvogadroQuantumIO_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/io -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/quantumio -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/gaussianfchk.cpp.o -MF avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/gaussianfchk.cpp.o.d -o avogadro/quantumio/CMakeFiles/AvogadroQuantum IO.dir/gaussianfchk.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/quantumio/gaussianfchk.cpp ninja: build stopped: subcommand failed. ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/science/avogadrolibs