[package - main-i386-default][math/R-cran-XLConnect] Failed for R-cran-XLConnect-1.0.5 in stage

From: <pkg-fallout_at_FreeBSD.org>
Date: Tue, 11 Oct 2022 08:33:54 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     thierry@FreeBSD.org
Log URL:        http://beefy17.nyi.freebsd.org/data/main-i386-default/pd20a3cf7e848_s91a84eb5ba/logs/R-cran-XLConnect-1.0.5.log
Build URL:      http://beefy17.nyi.freebsd.org/build.html?mastername=main-i386-default&build=pd20a3cf7e848_s91a84eb5ba
Log:

=>> Building math/R-cran-XLConnect
build started at Tue Oct 11 08:33:35 UTC 2022
port directory: /usr/ports/math/R-cran-XLConnect
package name: R-cran-XLConnect-1.0.5
building for: FreeBSD main-i386-default-job-01 14.0-CURRENT FreeBSD 14.0-CURRENT 1400072 i386
maintained by: thierry@FreeBSD.org
Makefile ident: 
Poudriere version: 3.2.8-21-g883afb07
Host OSVERSION: 1400063
Jail OSVERSION: 1400072
Job Id: 01




!!! Jail is newer than host. (Jail: 1400072, Host: 1400063) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



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--PLIST_SUB--
JAVASHAREDIR="share/java"  JAVAJARDIR="share/java/classes" R_MOD_DIR=lib/R/library/XLConnect OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/XLConnect"  EXAMPLESDIR="share/examples/XLConnect"  DATADIR="share/XLConnect"  WWWDIR="www/XLConnect"  ETCDIR="etc/XLConnect"
--End PLIST_SUB--

--SUB_LIST--
JAVASHAREDIR="/usr/local/share/java"  JAVAJARDIR="/usr/local/share/java/classes"  JAVALIBDIR="/usr/local/share/java/classes" PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/XLConnect DOCSDIR=/usr/local/share/doc/XLConnect EXAMPLESDIR=/usr/local/share/examples/XLConnect  WWWDIR=/usr/local/www/XLConnect ETCDIR=/usr/local/etc/XLConnect
--End SUB_LIST--

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=======================<phase: check-sanity   >============================
===>  License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   R-cran-XLConnect-1.0.5 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.18.4.pkg
[main-i386-default-job-01] Installing pkg-1.18.4...
[main-i386-default-job-01] Extracting pkg-1.18.4: .......... done
===>   R-cran-XLConnect-1.0.5 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of R-cran-XLConnect-1.0.5
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv3 accepted by the user
===> Fetching all distfiles required by R-cran-XLConnect-1.0.5 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GPLv3 accepted by the user
===> Fetching all distfiles required by R-cran-XLConnect-1.0.5 for building
=> SHA256 Checksum OK for XLConnect_1.0.5.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License GPLv3 accepted by the user
===> Fetching all distfiles required by R-cran-XLConnect-1.0.5 for building
===>  Extracting for R-cran-XLConnect-1.0.5
=> SHA256 Checksum OK for XLConnect_1.0.5.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for R-cran-XLConnect-1.0.5
===>  Applying FreeBSD patches for R-cran-XLConnect-1.0.5 from /usr/ports/math/R-cran-XLConnect/files
===========================================================================
=======================<phase: build-depends  >============================
<snip>
Message from ghostscript9-agpl-base-9.56.1_5:

--
This package installs a script named dvipdf that depends on dvips.  If you
want to use this script you need to install print/tex-dvipsk.
=====
Message from dejavu-2.37_1:

--
Make sure that the freetype module is loaded.  If it is not, add the following
line to the "Modules" section of your X Windows configuration file:

	Load "freetype"

Add the following line to the "Files" section of X Windows configuration file:

	FontPath "/usr/local/share/fonts/dejavu/"

Note: your X Windows configuration file is typically /etc/X11/XF86Config
if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org.
=====
Message from alsa-lib-1.2.2_1:

--
===>   NOTICE:

The alsa-lib port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://docs.freebsd.org/en/articles/contributing/#ports-contributing
=====
Message from libinotify-20211018:

--
You might want to consider increasing the kern.maxfiles tunable if you plan
to use this library for applications that need to monitor activity of a lot
of files.
=====
Message from openjdk8-8.342.07.1_1:

--
This OpenJDK implementation requires fdescfs(5) mounted on /dev/fd and
procfs(5) mounted on /proc.

If you have not done it yet, please do the following:

	mount -t fdescfs fdesc /dev/fd
	mount -t procfs proc /proc

To make it permanent, you need the following lines in /etc/fstab:

	fdesc	/dev/fd		fdescfs		rw	0	0
	proc	/proc		procfs		rw	0	0
===>   R-cran-XLConnect-1.0.5 depends on package: R-cran-rJava>0 - found
===>   Returning to build of R-cran-XLConnect-1.0.5
===>   R-cran-XLConnect-1.0.5 depends on file: /usr/local/openjdk8/bin/java - found
===>   R-cran-XLConnect-1.0.5 depends on file: /usr/local/bin/R - found
===========================================================================
=======================<phase: lib-depends    >============================
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for R-cran-XLConnect-1.0.5
===========================================================================
=======================<phase: build          >============================
===========================================================================
=======================<phase: run-depends    >============================
===>   R-cran-XLConnect-1.0.5 depends on package: R-cran-rJava>0 - found
===>   R-cran-XLConnect-1.0.5 depends on package: apache-poi>0 - not found
===>   Installing existing package /packages/All/apache-poi-4.1.2.pkg
[main-i386-default-job-01] Installing apache-poi-4.1.2...
[main-i386-default-job-01] Extracting apache-poi-4.1.2: .......... done
=====
Message from apache-poi-4.1.2:

--
===>   NOTICE:

The apache-poi port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===>   R-cran-XLConnect-1.0.5 depends on package: apache-poi>0 - found
===>   Returning to build of R-cran-XLConnect-1.0.5
===>   R-cran-XLConnect-1.0.5 depends on package: SparseBitSet>0 - not found
===>   Installing existing package /packages/All/SparseBitSet-1.2.pkg
[main-i386-default-job-01] Installing SparseBitSet-1.2...
[main-i386-default-job-01] Extracting SparseBitSet-1.2: .... done
===>   R-cran-XLConnect-1.0.5 depends on package: SparseBitSet>0 - found
===>   Returning to build of R-cran-XLConnect-1.0.5
===>   R-cran-XLConnect-1.0.5 depends on package: apache-xmlbeans>0 - not found
===>   Installing existing package /packages/All/apache-xmlbeans-3.1.0.pkg
[main-i386-default-job-01] Installing apache-xmlbeans-3.1.0...
[main-i386-default-job-01] Extracting apache-xmlbeans-3.1.0: .......... done
=====
Message from apache-xmlbeans-3.1.0:

--
To use XMLBeans you might have to define the following variables:
export XMLBEANS_HOME=/usr/local/share/java/classes
export CLASSPATH=/usr/local/share/java/classes/xmlbeans.jar:$CLASSPATH
===>   R-cran-XLConnect-1.0.5 depends on package: apache-xmlbeans>0 - found
===>   Returning to build of R-cran-XLConnect-1.0.5
===>   R-cran-XLConnect-1.0.5 depends on package: apache-commons-math>0 - not found
===>   Installing existing package /packages/All/apache-commons-math-3.6.1_1.pkg
[main-i386-default-job-01] Installing apache-commons-math-3.6.1_1...
[main-i386-default-job-01] Extracting apache-commons-math-3.6.1_1: ........ done
===>   R-cran-XLConnect-1.0.5 depends on package: apache-commons-math>0 - found
===>   Returning to build of R-cran-XLConnect-1.0.5
===>   R-cran-XLConnect-1.0.5 depends on package: apache-commons-codec>0 - not found
===>   Installing existing package /packages/All/apache-commons-codec-1.15.pkg
[main-i386-default-job-01] Installing apache-commons-codec-1.15...
[main-i386-default-job-01] Extracting apache-commons-codec-1.15: .......... done
===>   R-cran-XLConnect-1.0.5 depends on package: apache-commons-codec>0 - found
===>   Returning to build of R-cran-XLConnect-1.0.5
===>   R-cran-XLConnect-1.0.5 depends on package: apache-commons-compress>0 - not found
===>   Installing existing package /packages/All/apache-commons-compress-1.21.pkg
[main-i386-default-job-01] Installing apache-commons-compress-1.21...
[main-i386-default-job-01] Extracting apache-commons-compress-1.21: .......... done
===>   R-cran-XLConnect-1.0.5 depends on package: apache-commons-compress>0 - found
===>   Returning to build of R-cran-XLConnect-1.0.5
===>   R-cran-XLConnect-1.0.5 depends on package: apache-commons-collections4>0 - not found
===>   Installing existing package /packages/All/apache-commons-collections4-4.4.pkg
[main-i386-default-job-01] Installing apache-commons-collections4-4.4...
[main-i386-default-job-01] Extracting apache-commons-collections4-4.4: .......... done
===>   R-cran-XLConnect-1.0.5 depends on package: apache-commons-collections4>0 - found
===>   Returning to build of R-cran-XLConnect-1.0.5
===>   R-cran-XLConnect-1.0.5 depends on file: /usr/local/openjdk8/bin/java - found
===>   R-cran-XLConnect-1.0.5 depends on file: /usr/local/bin/R - found
===========================================================================
=======================<phase: stage          >============================
===>  Staging for R-cran-XLConnect-1.0.5
===>   Generating temporary packing list
* installing *source* package 'XLConnect' ...
file 'R/onLoad.R' has the wrong MD5 checksum
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** tests
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
#
# A fatal error has been detected by the Java Runtime Environment:
#
#  Internal Error (threadLocalStorage.cpp:58), pid=29841, tid=0x000f9713
#  guarantee(get_thread() == thread) failed: must be the same thread, quickly
#
# JRE version:  (8.0_342-b07) (build )
# Java VM: OpenJDK Server VM (25.342-b07 mixed mode bsd-x86 )
# Core dump written. Default location: /wrkdirs/usr/ports/math/R-cran-XLConnect/work/XLConnect/R.core
#
# An error report file with more information is saved as:
# /wrkdirs/usr/ports/math/R-cran-XLConnect/work/XLConnect/hs_err_pid29841.log
#
# If you would like to submit a bug report, please visit:
#   https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20
#
** testing if installed package can be loaded from final location
#
# A fatal error has been detected by the Java Runtime Environment:
#
#  Internal Error (threadLocalStorage.cpp:58), pid=30067, tid=0x000f913b
#  guarantee(get_thread() == thread) failed: must be the same thread, quickly
#
# JRE version:  (8.0_342-b07) (build )
# Java VM: OpenJDK Server VM (25.342-b07 mixed mode bsd-x86 )
# Core dump written. Default location: /wrkdirs/usr/ports/math/R-cran-XLConnect/work/XLConnect/R.core
#
# An error report file with more information is saved as:
# /wrkdirs/usr/ports/math/R-cran-XLConnect/work/XLConnect/hs_err_pid30067.log
#
# If you would like to submit a bug report, please visit:
#   https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20
#
** testing if installed package keeps a record of temporary installation path
Warning in file(con, "rb") :
  cannot open file '/tmp/RtmpSaUBZg/file711419ab2f51': No such file or directory
Error in file(con, "rb") : cannot open the connection
* removing '/wrkdirs/usr/ports/math/R-cran-XLConnect/work/stage/usr/local/lib/R/library/XLConnect'
*** Error code 1

Stop.
make: stopped in /usr/ports/math/R-cran-XLConnect