From nobody Sun Oct 09 04:38:17 2022 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4MlTnP5h16z4dhGN for ; Sun, 9 Oct 2022 04:38:17 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4MlTnP2vxsz43Md; Sun, 9 Oct 2022 04:38:17 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy5.nyi.freebsd.org (beefy5.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:14]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4MlTnP1rssz19QC; Sun, 9 Oct 2022 04:38:17 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy5.nyi.freebsd.org (localhost [127.0.0.1]) by beefy5.nyi.freebsd.org (8.16.1/8.16.1) with ESMTP id 2994cHhO058520; Sun, 9 Oct 2022 04:38:17 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by beefy5.nyi.freebsd.org (8.16.1/8.16.1/Submit) id 2994cHBW058518; Sun, 9 Oct 2022 04:38:17 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Sun, 9 Oct 2022 04:38:17 GMT From: pkg-fallout@FreeBSD.org Message-Id: <202210090438.2994cHBW058518@beefy5.nyi.freebsd.org> To: yuri@FreeBSD.org Subject: [package - 123i386-default][science/avogadrolibs] Failed for avogadrolibs-1.95.1_2 in build Cc: pkg-fallout@FreeBSD.org ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1665290297; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc; bh=MD4c1oUQvApjB9KCIRvHgooY+FcRr7VcTeKejvrBp3U=; b=qx5VtCpxOR6ajKWH0lhNaMagPJtehJqoVV5wOrYZ13DsmLJJhDQpzwF668k8AqXdSqZWEV wBw6ttYWYEIcT9ARpcfwjDYsFE7ZMsuL5Kf0AM1a/mSm2Ml6I9lWMoiRALtPqiePMYwowb 7gCb7+p3kvRb+yGc+ZON48gmoMoTaV4Kfwg8F5JFRpN7EsMzZpeiDYZXWhcVy8hzblT39o tdzqbhIO6ldT6Fp3midNbCxzjpuc5Fu+CMixBETD507tgqnN+iF1HlRAXXD4RlufgcvNmr yy8ouztsD6PyDpNoHEKNdGiX9trei5kryZbDKSYEAyzoSBjHOw6Lq//1tf16yw== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1665290297; a=rsa-sha256; cv=none; b=dHYT0Q4nNlaFyVShX8Esh0dXoN7TAG7vP9jbJdYAJWDg+wZMtByEKnkm4jP3vmpd6lw7s4 ABgFwZA54jn/kwT0ffkNq0ezjn95jW9q865w9LJzRihzVceI6EprLCLAeUc+Wcoy/V0QMf JxcemF9HRpR8z/0++I7Y+GfbRLshM2Pzsm6VGxpv/F3tIJrSHEbxZpkwxcs0QM0H2djJpj RIwMZfi7DWluptFCuwKW4QktXN2gQlf98XbuepiwGq4E+f1rcr6sJ5JNT6PAVUrXu5hCC/ o5DIpPoCSSHK88k591hBUFWSICn2vrGM3bsq6pJDlYYzdECLF0bjulNOI5YrZw== ARC-Authentication-Results: i=1; mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: http://beefy5.nyi.freebsd.org/data/123i386-default/06ade0876922/logs/avogadrolibs-1.95.1_2.log Build URL: http://beefy5.nyi.freebsd.org/build.html?mastername=123i386-default&build=06ade0876922 Log: =>> Building science/avogadrolibs build started at Sun Oct 9 04:32:17 UTC 2022 port directory: /usr/ports/science/avogadrolibs package name: avogadrolibs-1.95.1_2 building for: FreeBSD 123i386-default-job-06 12.3-RELEASE-p7 FreeBSD 12.3-RELEASE-p7 i386 maintained by: yuri@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-21-g883afb07 Host OSVERSION: 1400063 Jail OSVERSION: 1203000 Job Id: 06 ---Begin Environment--- SHELL=/bin/csh UNAME_p=i386 UNAME_m=i386 OSVERSION=1203000 UNAME_v=FreeBSD 12.3-RELEASE-p7 UNAME_r=12.3-RELEASE-p7 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-21-g883afb07 MASTERMNT=/usr/local/poudriere/data/.m/123i386-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/123i386-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=123i386-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/123i386-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for avogadrolibs-1.95.1_2: HDF5=off: HDF-5 data format support LIBARCHIVE=on: Enable optional Libarchive features LIBMSYM=on: Enable optional features using libmsym MMTF=on: Enable optional features using mmtf OPENGL=on: 2D/3D rendering support via OpenGL QT5=on: Qt 5 toolkit support SPGLIB=on: Enable optional features using spglib VTK=off: Enable libraries that use VTK ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- QT_SELECT=qt5 QMAKEMODULES="/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/mkspecs/modules:/usr/local/lib/qt5/mkspecs/modules" XDG_DATA_HOME=/wrkdirs/usr/ports/science/avogadrolibs/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/avogadrolibs/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/avogadrolibs/work/.cache HOME=/wrkdirs/usr/ports/science/avogadrolibs/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/avogadrolibs/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/avogadrolibs/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " QT_SELECT=qt5 QMAKEMODULES="/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/mkspecs/modules:/usr/local/lib/qt5/mkspecs/modules" XDG_DATA_HOME=/wrkdirs/usr/ports/science/avogadrolibs/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/avogadrolibs/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/avogadrolibs/work/.cache HOME=/wrkdirs/usr/ports/science/avogadrolibs/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/avogadrolibs/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/avogadrolibs/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/science/avogadrolibs/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPP FLAGS="-isystem /usr/local/include" LDFLAGS=" -fstack-protector-strong " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- HDF5="@comment " NO_HDF5="" LIBARCHIVE="" NO_LIBARCHIVE="@comment " LIBMSYM="" NO_LIBMSYM="@comment " MMTF="" NO_MMTF="@comment " OPENGL="" NO_OPENGL="@comment " QT5="" NO_QT5="@comment " SPGLIB="" NO_SPGLIB="@comment " VTK="@comment " NO_VTK="" CMAKE_BUILD_TYPE="release" QT_BINDIR="lib/qt5/bin" QT_INCDIR="include/qt5" QT_LIBDIR="lib/qt5" QT_ARCHDIR="lib/qt5" QT_PLUGINDIR="lib/qt5/plugins" QT_LIBEXECDIR="libexec/qt5" QT_IMPORTDIR="lib/qt5/imports" QT_QMLDIR="lib/qt5/qml" QT_DATADIR="share/qt5" QT_DOCDIR="share/doc/qt5" QT_L10NDIR="share/qt5/translations" QT_EXAMPLEDIR="share/examples/qt5" QT_TESTDIR="share/qt5/tests" QT_MKSPECDIR="lib/qt5/mkspecs" QT_TOOLDIR="lib/qt5/bin" OSREL=12.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/avogadrolibs" EXAMPLESDIR="share/examples/avogadrolibs" DATADIR="share/avogadrolibs" WWWDIR="www/avogadrolibs" ETCDIR="etc/avogadrolibs" --End PLIST_SUB-- --SUB_LIST-- HDF5="@comment " NO_HDF5="" LIBARCHIVE="" NO_LIBARCHIVE="@comment " LIBMSYM="" NO_LIBMSYM="@comment " MMTF="" NO_MMTF="@comment " OPENGL="" NO_OPENGL="@comment " QT5="" NO_QT5="@comment " SPGLIB="" NO_SPGLIB="@comment " VTK="@comment " NO_VTK="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/avogadrolibs DOCSDIR=/usr/local/share/doc/avogadrolibs EXAMPLESDIR=/usr/local/share/examples/avogadrolibs WWWDIR=/usr/local/www/avogadrolibs ETCDIR=/usr/local/etc/avogadrolibs --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 10.0.1 (git@github.com:llvm/llvm-project.git llvmorg-10.0.1-0-gef32c611aa2) Target: i386-unknown-freebsd12.3 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 10.0.1 (git@github.com:llvm/llvm-project.git llvmorg-10.0.1-0-gef32c611aa2) Target: i386-unknown-freebsd12.3 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-m" "elf_i386_fbsd" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_53255a77=yes CC_OUTPUT_921dbbb2_911cfe02=error: invalid value 'c++2b' in '-std=c++2b' note: use 'c++98' or 'c++03' for 'ISO C++ 1998 with amendments' standard note: use 'gnu++98' or 'gnu++03' for 'ISO C++ 1998 with amendments and GNU extensions' standard note: use 'c++11' for 'ISO C++ 2011 with amendments' standard note: use 'gnu++11' for 'ISO C++ 2011 with amendments and GNU extensions' standard note: use 'c++14' for 'ISO C++ 2014 with amendments' standard note: use 'gnu++14' for 'ISO C++ 2014 with amendments and GNU extensions' standard note: use 'c++17' for 'ISO C++ 2017 with amendments' standard note: use 'gnu++17' for 'ISO C++ 2017 with amendments and GNU extensions' standard note: use 'c++20' for 'ISO C++ 2020 DIS' standard note: use 'gnu++20' for 'ISO C++ 2020 DIS with GNU extensions' standard CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes CC_OUTPUT_921dbbb2_af59ad06=yes CC_OUTPUT_921dbbb2_a15f3fcf=error: invalid value 'gnu++2b' in '-std=gnu++2b' note: use 'c++98' or 'c++03' for 'ISO C++ 1998 with amendments' standard note: use 'gnu++98' or 'gnu++03' for 'ISO C++ 1998 with amendments and GNU extensions' standard note: use 'c++11' for 'ISO C++ 2011 with amendments' standard note: use 'gnu++11' for 'ISO C++ 2011 with amendments and GNU extensions' standard note: use 'c++14' for 'ISO C++ 2014 with amendments' standard note: use 'gnu++14' for 'ISO C++ 2014 with amendments and GNU extensions' standard note: use 'c++17' for 'ISO C++ 2017 with amendments' standard note: use 'gnu++17' for 'ISO C++ 2017 with amendments and GNU extensions' standard note: use 'c++20' for 'ISO C++ 2020 DIS' standard note: use 'gnu++20' for 'ISO C++ 2020 DIS with GNU extensions' standard _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 10.0.1 (git@github.com:llvm/llvm-project.git llvmorg-10.0.1-0-gef32c611aa2) Target: i386-unknown-freebsd12.3 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=i386 OPSYS=FreeBSD _OSRELEASE=12.3-RELEASE-p7 OSREL=12.3 OSVERSION=1203000 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License GPLv2 accepted by the user =========================================================================== =================================================== ===> avogadrolibs-1.95.1_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.18.4.pkg [123i386-default-job-06] Installing pkg-1.18.4... [123i386-default-job-06] Extracting pkg-1.18.4: .......... done ===> avogadrolibs-1.95.1_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of avogadrolibs-1.95.1_2 =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by avogadrolibs-1.95.1_2 for building =========================================================================== =================================================== ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by avogadrolibs-1.95.1_2 for building => SHA256 Checksum OK for OpenChemistry-avogadrolibs-1.95.1_GH0.tar.gz. => SHA256 Checksum OK for OpenChemistry-molecules-b1e16c5_GH0.tar.gz. => SHA256 Checksum OK for OpenChemistry-crystals-c3e2468_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by avogadrolibs-1.95.1_2 for building ===> Extracting for avogadrolibs-1.95.1_2 => SHA256 Checksum OK for OpenChemistry-avogadrolibs-1.95.1_GH0.tar.gz. => SHA256 Checksum OK for OpenChemistry-molecules-b1e16c5_GH0.tar.gz. => SHA256 Checksum OK for OpenChemistry-crystals-c3e2468_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for avogadrolibs-1.95.1_2 CMake Warning (dev) at /usr/local/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:438 (message): The package name passed to `find_package_handle_standard_args` (SPGLIB) does not match the name of the calling package (Spglib). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/FindSpglib.cmake:15 (find_package_handle_standard_args) avogadro/core/CMakeLists.txt:7 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found SPGLIB: /usr/local/include/spglib -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Found MMTF: /usr/local/include CMake Warning (dev) at /usr/local/share/cmake/Modules/FindOpenGL.cmake:315 (message): Policy CMP0072 is not set: FindOpenGL prefers GLVND by default when available. Run "cmake --help-policy CMP0072" for policy details. Use the cmake_policy command to set the policy and suppress this warning. FindOpenGL found both a legacy GL library: OPENGL_gl_LIBRARY: /usr/local/lib/libGL.so and GLVND libraries for OpenGL and GLX: OPENGL_opengl_LIBRARY: /usr/local/lib/libOpenGL.so OPENGL_glx_LIBRARY: /usr/local/lib/libGLX.so OpenGL_GL_PREFERENCE has not been set to "GLVND" or "LEGACY", so for compatibility with CMake 3.10 and below the legacy GL library will be used. Call Stack (most recent call first): avogadro/rendering/CMakeLists.txt:6 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found OpenGL: /usr/local/lib/libOpenGL.so -- Found GLEW: /usr/local/include -- Found PythonInterp: /usr/local/bin/python3.9 (found suitable version "3.9.14", minimum required is "3") Avogadro Generators not found at /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/../avogadrogenerators! CMake Warning (dev) at /usr/local/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:438 (message): The package name passed to `find_package_handle_standard_args` (LIBARCHIVE) does not match the name of the calling package (LibArchive). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/FindLibArchive.cmake:17 (find_package_handle_standard_args) avogadro/qtplugins/plugindownloader/CMakeLists.txt:3 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found LIBARCHIVE: /usr/local/include msym include dir /usr/local/lib/cmake/libmsym/../../../include CMake Warning (dev) at /usr/local/share/cmake/Modules/FindOpenGL.cmake:315 (message): Policy CMP0072 is not set: FindOpenGL prefers GLVND by default when available. Run "cmake --help-policy CMP0072" for policy details. Use the cmake_policy command to set the policy and suppress this warning. FindOpenGL found both a legacy GL library: OPENGL_gl_LIBRARY: /usr/local/lib/libGL.so and GLVND libraries for OpenGL and GLX: OPENGL_opengl_LIBRARY: /usr/local/lib/libOpenGL.so OPENGL_glx_LIBRARY: /usr/local/lib/libGLX.so OpenGL_GL_PREFERENCE has not been set to "GLVND" or "LEGACY", so for compatibility with CMake 3.10 and below the legacy GL library will be used. Call Stack (most recent call first): avogadro/qtplugins/overlayaxes/CMakeLists.txt:3 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_COLOR_MAKEFILE CMAKE_CXX_FLAGS_DEBUG CMAKE_C_FLAGS_DEBUG CMAKE_MODULE_LINKER_FLAGS CMAKE_VERBOSE_MAKEFILE -- Build files have been written to: /wrkdirs/usr/ports/science/avogadrolibs/work/.build =========================================================================== =================================================== ===> Building for avogadrolibs-1.95.1_2 [ 0% 1/553] /usr/bin/c++ -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/pugixml -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT utilities/bodr/CMakeFiles/bodrparse.dir/bodrparse.cxx.o -MF utilities/bodr/CMakeFiles/bodrparse.dir/bodrparse.cxx.o.d -o utilities/bodr/CMakeFiles/bodrparse.dir/bodrparse.cxx.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/utilities/bodr/bodrparse.cxx [ 0% 2/553] : && /usr/bin/c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fstack-protector-strong utilities/bodr/CMakeFiles/bodrparse.dir/bodrparse.cxx.o -o bin/bodrparse && : [ 0% 3/553] /usr/bin/c++ -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT utilities/encodefile/CMakeFiles/encodefile.dir/encodefile.cxx.o -MF utilities/encodefile/CMakeFiles/encodefile.dir/encodefile.cxx.o.d -o utilities/encodefile/CMakeFiles/encodefile.dir/encodefile.cxx.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/utilities/encodefile/encodefile.cxx [ 0% 4/553] : && /usr/bin/c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fstack-protector-strong utilities/encodefile/CMakeFiles/encodefile.dir/encodefile.cxx.o -o bin/encodefile && : [ 0% 5/553] /usr/bin/c++ -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT utilities/resdata/CMakeFiles/resdataparse.dir/resdataparse.cxx.o -MF utilities/resdata/CMakeFiles/resdataparse.dir/resdataparse.cxx.o.d -o utilities/resdata/CMakeFiles/resdataparse.dir/resdataparse.cxx.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/utilities/resdata/resdataparse.cxx [ 1% 6/553] : && /usr/bin/c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fstack-protector-strong utilities/resdata/CMakeFiles/resdataparse.dir/resdataparse.cxx.o -o bin/resdataparse && : [ 1% 7/553] /usr/bin/cc -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fPIC -MD -MT thirdparty/struct/CMakeFiles/struct.dir/struct.c.o -MF thirdparty/struct/CMakeFiles/struct.dir/struct.c.o.d -o thirdparty/struct/CMakeFiles/struct.dir/struct.c.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/struct/struct.c [ 1% 8/553] /usr/bin/cc -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fPIC -MD -MT thirdparty/struct/CMakeFiles/struct.dir/struct_endian.c.o -MF thirdparty/struct/CMakeFiles/struct.dir/struct_endian.c.o.d -o thirdparty/struct/CMakeFiles/struct.dir/struct_endian.c.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/struct/struct_endian.c [ 1% 9/553] : && /usr/local/bin/cmake -E rm -f thirdparty/struct/libstruct.a && /usr/bin/llvm-ar qc thirdparty/struct/libstruct.a thirdparty/struct/CMakeFiles/struct.dir/struct.c.o thirdparty/struct/CMakeFiles/struct.dir/struct_endian.c.o && /usr/bin/llvm-ranlib thirdparty/struct/libstruct.a && : [ 1% 10/553] /usr/bin/cc -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fPIC -MD -MT thirdparty/libgwavi/CMakeFiles/gwavi.dir/gwavi.c.o -MF thirdparty/libgwavi/CMakeFiles/gwavi.dir/gwavi.c.o.d -o thirdparty/libgwavi/CMakeFiles/gwavi.dir/gwavi.c.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/libgwavi/gwavi.c [ 1% 11/553] /usr/bin/cc -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fPIC -MD -MT thirdparty/libgwavi/CMakeFiles/gwavi.dir/fileio.c.o -MF thirdparty/libgwavi/CMakeFiles/gwavi.dir/fileio.c.o.d -o thirdparty/libgwavi/CMakeFiles/gwavi.dir/fileio.c.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/libgwavi/fileio.c [ 2% 12/553] /usr/bin/cc -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fPIC -MD -MT thirdparty/libgwavi/CMakeFiles/gwavi.dir/avi-utils.c.o -MF thirdparty/libgwavi/CMakeFiles/gwavi.dir/avi-utils.c.o.d -o thirdparty/libgwavi/CMakeFiles/gwavi.dir/avi-utils.c.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/libgwavi/avi-utils.c [ 2% 13/553] : && /usr/local/bin/cmake -E rm -f thirdparty/libgwavi/libgwavi.a && /usr/bin/llvm-ar qc thirdparty/libgwavi/libgwavi.a thirdparty/libgwavi/CMakeFiles/gwavi.dir/gwavi.c.o thirdparty/libgwavi/CMakeFiles/gwavi.dir/fileio.c.o thirdparty/libgwavi/CMakeFiles/gwavi.dir/avi-utils.c.o && /usr/bin/llvm-ranlib thirdparty/libgwavi/libgwavi.a && : [ 2% 14/553] /usr/bin/c++ -DAvogadroCore_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -isystem /usr/local/include/eigen3 -isystem /usr/local/include/spglib -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/angleiterator.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/angleiterator.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/angleiterator.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/core/angleiterator.cpp [ 2% 15/553] /usr/bin/c++ -DAvogadroCore_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -isystem /usr/local/include/eigen3 -isystem /usr/local/include/spglib -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/connectedgroup.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/connectedgroup.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/connectedgroup.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/core/connectedgroup.cpp [ 2% 16/553] /usr/bin/c++ -DAvogadroCore_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -isystem /usr/local/include/eigen3 -isystem /usr/local/include/spglib -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/coordinateblockgenerator.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/coordinateblockgenerator.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/coordinateblockgenerator.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/core/coordinateblockgenerator.cpp [ 3% 17/553] /usr/bin/c++ -DAvogadroCore_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -isystem /usr/local/include/eigen3 -isystem /usr/local/include/spglib -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/crystaltools.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/crystaltools.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/crystaltools.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/core/crystaltools.cpp [ 3% 18/553] /usr/bin/c++ -DAvogadroCore_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -isystem /usr/local/include/eigen3 -isystem /usr/local/include/spglib -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/cube.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/cube.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/cube.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/core/cube.cpp [ 3% 19/553] /usr/bin/c++ -DAvogadroCore_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -isystem /usr/local/include/eigen3 -isystem /usr/local/include/spglib -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/elements.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/elements.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/elements.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/core/elements.cpp [ 3% 20/553] /usr/bin/c++ -DAvogadroCore_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -isystem /usr/local/include/eigen3 -isystem /usr/local/include/spglib -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/dihedraliterator.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/dihedraliterator.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/dihedraliterator.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/core/dihedraliterator.cpp [ 3% 21/553] /usr/bin/c++ -DAvogadroCore_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -isystem /usr/local/include/eigen3 -isystem /usr/local/include/spglib -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/gaussianset.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/gaussianset.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/gaussianset.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/core/gaussianset.cpp [ 3% 22/553] /usr/bin/c++ -DAvogadroCore_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -isystem /usr/local/include/eigen3 -isystem /usr/local/include/spglib -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/gaussiansettools.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/gaussiansettools.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/gaussiansettools.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/core/gaussiansettools.cpp [ 4% 23/553] /usr/bin/c++ -DAvogadroCore_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -isystem /usr/local/include/eigen3 -isystem /usr/local/include/spglib -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/graph.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/graph.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/graph.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/core/graph.cpp [ 4% 24/553] /usr/bin/c++ -DAvogadroCore_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -isystem /usr/local/include/eigen3 -isystem /usr/local/include/spglib -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/layer.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/layer.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/layer.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/core/layer.cpp [ 4% 25/553] /usr/bin/c++ -DAvogadroCore_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -isystem /usr/local/include/eigen3 -isystem /usr/local/include/spglib -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/layermanager.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/layermanager.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/layermanager.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/core/layermanager.cpp [ 4% 26/553] /usr/bin/c++ -DAvogadroCore_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -isystem /usr/local/include/eigen3 -isystem /usr/local/include/spglib -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/mesh.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/mesh.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/mesh.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/core/mesh.cpp [ 4% 27/553] /usr/bin/c++ -DAvogadroCore_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -isystem /usr/local/include/eigen3 -isystem /usr/local/include/spglib -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/molecule.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/molecule.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/molecule.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/core/molecule.cpp [ 5% 28/553] /usr/bin/c++ -DAvogadroCore_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -isystem /usr/local/include/eigen3 -isystem /usr/local/include/spglib -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/mutex.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/mutex.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/mutex.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/core/mutex.cpp [ 5% 29/553] /usr/bin/c++ -DAvogadroCore_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -isystem /usr/local/include/eigen3 -isystem /usr/local/include/spglib -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/nameatomtyper.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/nameatomtyper.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/nameatomtyper.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/core/nameatomtyper.cpp [ 5% 30/553] /usr/bin/c++ -DAvogadroCore_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -isystem /usr/local/include/eigen3 -isystem /usr/local/include/spglib -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/residue.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/residue.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/residue.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/core/residue.cpp [ 5% 31/553] /usr/bin/c++ -DAvogadroCore_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -isystem /usr/local/include/eigen3 -isystem /usr/local/include/spglib -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/ringperceiver.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/ringperceiver.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/ringperceiver.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/core/ringperceiver.cpp [ 5% 32/553] /usr/bin/c++ -DAvogadroCore_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -isystem /usr/local/include/eigen3 -isystem /usr/local/include/spglib -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/secondarystructure.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/secondarystructure.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/secondarystructure.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/core/secondarystructure.cpp [ 5% 33/553] /usr/bin/c++ -DAvogadroCore_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -isystem /usr/local/include/eigen3 -isystem /usr/local/include/spglib -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/slaterset.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/slaterset.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/slaterset.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/core/slaterset.cpp [ 6% 34/553] /usr/bin/c++ -DAvogadroCore_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -isystem /usr/local/include/eigen3 -isystem /usr/local/include/spglib -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/slatersettools.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/slatersettools.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/slatersettools.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/core/slatersettools.cpp [ 6% 35/553] /usr/bin/c++ -DAvogadroCore_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -isystem /usr/local/include/eigen3 -isystem /usr/local/include/spglib -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/spacegroups.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/spacegroups.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/spacegroups.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/core/spacegroups.cpp [ 6% 36/553] /usr/bin/c++ -DAvogadroCore_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -isystem /usr/local/include/eigen3 -isystem /usr/local/include/spglib -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/symbolatomtyper.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/symbolatomtyper.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/symbolatomtyper.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/core/symbolatomtyper.cpp [ 6% 37/553] /usr/bin/c++ -DAvogadroCore_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -isystem /usr/local/include/eigen3 -isystem /usr/local/include/spglib -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/unitcell.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/unitcell.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/unitcell.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/core/unitcell.cpp [ 6% 38/553] /usr/bin/c++ -DAvogadroCore_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -isystem /usr/local/include/eigen3 -isystem /usr/local/include/spglib -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/variantmap.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/variantmap.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/variantmap.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/core/variantmap.cpp [ 7% 39/553] /usr/bin/c++ -DAvogadroCore_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -isystem /usr/local/include/eigen3 -isystem /usr/local/include/spglib -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/version.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/version.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/version.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/core/version.cpp [ 7% 40/553] /usr/bin/c++ -DAvogadroCore_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -isystem /usr/local/include/eigen3 -isystem /usr/local/include/spglib -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/sharedmutex.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/sharedmutex.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/sharedmutex.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/core/sharedmutex.cpp [ 7% 41/553] /usr/bin/c++ -DAvogadroCore_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -isystem /usr/local/include/eigen3 -isystem /usr/local/include/spglib -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/avospglib.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/avospglib.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/avospglib.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/core/avospglib.cpp [ 7% 42/553] : && /usr/bin/c++ -fPIC -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fstack-protector-strong -shared -Wl,-soname,libAvogadroCore.so.1 -o lib/libAvogadroCore.so.1.95.1 avogadro/core/CMakeFiles/AvogadroCore.dir/angleiterator.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/connectedgroup.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/coordinateblockgenerator.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/crystaltools.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/cube.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/elements.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/dihedraliterator.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/gaussianset.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/gaussiansettools.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/graph.cpp.o avogadro/core/CMakeFi les/AvogadroCore.dir/layer.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/layermanager.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/mesh.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/molecule.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/mutex.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/nameatomtyper.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/residue.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/ringperceiver.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/secondarystructure.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/slaterset.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/slatersettools.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/spacegroups.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/symbolatomtyper.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/unitcell.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/variantmap.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/version.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/sharedmutex.cpp.o avogadro/core/C MakeFiles/AvogadroCore.dir/avospglib.cpp.o ! -Wl,-rpath,/usr/local/lib: /usr/local/lib/libsymspg.so -lpthread && : [ 7% 43/553] /usr/local/bin/cmake -E cmake_symlink_library lib/libAvogadroCore.so.1.95.1 lib/libAvogadroCore.so.1 lib/libAvogadroCore.so && : [ 7% 44/553] /usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o -MF avogadro/io/CMak eFiles/AvogadroIO.dir/cjsonformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/cjsonformat.cpp [ 8% 45/553] /usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o -MF avogadro/io/CMakeF iles/AvogadroIO.dir/cmlformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/cmlformat.cpp [ 8% 46/553] /usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/dcdformat.cpp.o -MF avogadro/io/CMakeF iles/AvogadroIO.dir/dcdformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/dcdformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/dcdformat.cpp [ 8% 47/553] /usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/fileformat.cpp.o -MF avogadro/io/CMake Files/AvogadroIO.dir/fileformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/fileformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/fileformat.cpp [ 8% 48/553] /usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o -MF avogadro/i o/CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/fileformatmanager.cpp In file included from /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/fileformatmanager.cpp:29: /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/vaspformat.h:90:8: warning: 'read' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] bool read(std::istream& inStream, Core::Molecule& mol); ^ /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/fileformat.h:126:16: note: overridden virtual function is here virtual bool read(std::istream& in, Core::Molecule& molecule) = 0; ^ In file included from /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/fileformatmanager.cpp:29: /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/vaspformat.h:91:8: warning: 'write' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] bool write(std::ostream& outStream, const Core::Molecule& mol); ^ /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/fileformat.h:134:16: note: overridden virtual function is here virtual bool write(std::ostream& out, const Core::Molecule& molecule) = 0; ^ 2 warnings generated. [ 8% 49/553] /usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o -MF avogadro/io/CM akeFiles/AvogadroIO.dir/gromacsformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/gromacsformat.cpp [ 9% 50/553] /usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o -MF avogadro/io/CMakeF iles/AvogadroIO.dir/mdlformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/mdlformat.cpp [ 9% 51/553] /usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o -MF avogadro/io/CMake Files/AvogadroIO.dir/vaspformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/vaspformat.cpp In file included from /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/vaspformat.cpp:17: /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/vaspformat.h:90:8: warning: 'read' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] bool read(std::istream& inStream, Core::Molecule& mol); ^ /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/fileformat.h:126:16: note: overridden virtual function is here virtual bool read(std::istream& in, Core::Molecule& molecule) = 0; ^ In file included from /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/vaspformat.cpp:17: /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/vaspformat.h:91:8: warning: 'write' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] bool write(std::ostream& outStream, const Core::Molecule& mol); ^ /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/fileformat.h:134:16: note: overridden virtual function is here virtual bool write(std::ostream& out, const Core::Molecule& molecule) = 0; ^ 2 warnings generated. [ 9% 52/553] /usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/pdbformat.cpp.o -MF avogadro/io/CMakeF iles/AvogadroIO.dir/pdbformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/pdbformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/pdbformat.cpp [ 9% 53/553] /usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/xyzformat.cpp.o -MF avogadro/io/CMakeF iles/AvogadroIO.dir/xyzformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/xyzformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/xyzformat.cpp [ 9% 54/553] /usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/trrformat.cpp.o -MF avogadro/io/CMakeF iles/AvogadroIO.dir/trrformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/trrformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/trrformat.cpp [ 9% 55/553] /usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/lammpsformat.cpp.o -MF avogadro/io/CMa keFiles/AvogadroIO.dir/lammpsformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/lammpsformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/lammpsformat.cpp [ 10% 56/553] /usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o -MF avogadro/io/CMake Files/AvogadroIO.dir/mmtfformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/mmtfformat.cpp FAILED: avogadro/io/CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o /usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o -MF avogadro/io/CMakeFiles/Avogadro IO.dir/mmtfformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/mmtfformat.cpp /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/mmtfformat.cpp:105:22: error: call to 'is_polymer' is ambiguous bool isPolymer = is_polymer(chainIndex, entityList); ^~~~~~~~~~ /usr/local/include/mmtf/structure_data.hpp:432:6: note: candidate function bool is_polymer(const unsigned int chain_index, ^ /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.95.1/avogadro/io/mmtfformat.cpp:47:6: note: candidate function bool is_polymer(const unsigned int chain_index, ^ 1 error generated. ninja: build stopped: subcommand failed. *** Error code 1 Stop. make: stopped in /usr/ports/science/avogadrolibs