From nobody Mon Oct 03 06:33:24 2022 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4Mgrd12qSVz4XxxK for ; Mon, 3 Oct 2022 06:33:25 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4Mgrd070WFz3V5K; Mon, 3 Oct 2022 06:33:24 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from ampere2.nyi.freebsd.org (ampere2.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:24]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4Mgrd0646cz171J; Mon, 3 Oct 2022 06:33:24 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from ampere2.nyi.freebsd.org (localhost [127.0.0.1]) by ampere2.nyi.freebsd.org (8.16.1/8.16.1) with ESMTP id 2936XOGb058022; Mon, 3 Oct 2022 06:33:24 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by ampere2.nyi.freebsd.org (8.16.1/8.16.1/Submit) id 2936XOjE058004; Mon, 3 Oct 2022 06:33:24 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Mon, 3 Oct 2022 06:33:24 GMT From: pkg-fallout@FreeBSD.org Message-Id: <202210030633.2936XOjE058004@ampere2.nyi.freebsd.org> To: thierry@FreeBSD.org Subject: [package - main-arm64-default][math/R-cran-XLConnect] Failed for R-cran-XLConnect-1.0.5 in stage Cc: pkg-fallout@FreeBSD.org ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1664778804; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc; bh=2obkjeU8c4GHVhCHLzlbh3IksOp4+5OwpELaUD4vgV0=; b=DcoZKbz1Y9cEttEupKJi6yu1AH2Gzf+TePe/fWRIYjJiF9+BCYv6J2YtZWlBhHPHieF+iN yPPBHfk0mL8MpBX4OJqEsdyK4nHnxNbJ5eNrcvi3CP0SNN7ZV6SLoXViFTLwyIONzo2/f0 S6J472UanQawv/bWlczaKSRTTJl3BKMaBircdzXMdN9MS1U2gfuLCFHQi62jo6Gh0nnTbJ GbJ2bf6KuvjiXGczrNd2bP8ekG67n/HfO80WyJVimpF5QF/ek81rqoNNyByj/+kcJnsPyL ysoR/e7+7Egs1flIL8a/+9wWEqYbXaBUv5EkTNDOY/gBxNLtz69Cnncbc10bqQ== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1664778804; a=rsa-sha256; cv=none; b=MbkIkQfPbhGM4fbfxQWe9mYHwWz7Daeg1I4FvvoTTeLIzpb24diEyEYmpyrYRCR/7qD/oq BLOWMhvAGvTuKUKLPoJZBdI6GMEXcdHAKr2Fp19WnErmJh8MoJw/wYtYixwNfpRUHbrTws lWVQp6JQeiozlHusZQMQOxeFEdN/9ZoQRJJj27ORozkdntPLyQcx6HwflSY6cYjyMcUIIn UBAoK005u1gaDoZkF9rEbVQl2IFJPmLHrsyfWt9Y9mq1TE0rzWTWH8ABPQD0a5FAkpoTQs mqhBuk/e6AiFSM0M10k+d/XE8G3nFGWdCxUWZpUzWhXcU1AZ3s/Rx7vHXqC9GA== ARC-Authentication-Results: i=1; mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: thierry@FreeBSD.org Log URL: http://ampere2.nyi.freebsd.org/data/main-arm64-default/pb46629e97f41_sf341e9bad3/logs/R-cran-XLConnect-1.0.5.log Build URL: http://ampere2.nyi.freebsd.org/build.html?mastername=main-arm64-default&build=pb46629e97f41_sf341e9bad3 Log: =>> Building math/R-cran-XLConnect build started at Mon Oct 3 06:32:10 UTC 2022 port directory: /usr/ports/math/R-cran-XLConnect package name: R-cran-XLConnect-1.0.5 building for: FreeBSD main-arm64-default-job-01 14.0-CURRENT FreeBSD 14.0-CURRENT 1400072 arm64 maintained by: thierry@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-21-g883afb07 Host OSVERSION: 1400063 Jail OSVERSION: 1400072 Job Id: 01 !!! Jail is newer than host. (Jail: 1400072, Host: 1400063) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/sh OSVERSION=1400072 UNAME_v=FreeBSD 14.0-CURRENT 1400072 UNAME_r=14.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-21-g883afb07 MASTERMNT=/usr/local/poudriere/data/.m/main-arm64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/main-arm64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=main-arm64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/main-arm64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- thierry@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/math/R-cran-XLConnect/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/R-cran-XLConnect/work XDG_CACHE_HOME=/wrkdirs/usr/ports/math/R-cran-XLConnect/work/.cache HOME=/wrkdirs/usr/ports/math/R-cran-XLConnect/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/R-cran-XLConnect/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/math/R-cran-XLConnect/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/math/R-cran-XLConnect/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/R-cran-XLConnect/work XDG_CACHE_HOME=/wrkdirs/usr/ports/math/R-cran-XLConnect/work/.cache HOME=/wrkdirs/usr/ports/math/R-cran-XLConnect/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/R-cran-XLConnect/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/math/R-cran-XLConnect/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_S CRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- JAVASHAREDIR="share/java" JAVAJARDIR="share/java/classes" R_MOD_DIR=lib/R/library/XLConnect OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/XLConnect" EXAMPLESDIR="share/examples/XLConnect" DATADIR="share/XLConnect" WWWDIR="www/XLConnect" ETCDIR="etc/XLConnect" --End PLIST_SUB-- --SUB_LIST-- JAVASHAREDIR="/usr/local/share/java" JAVAJARDIR="/usr/local/share/java/classes" JAVALIBDIR="/usr/local/share/java/classes" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/XLConnect DOCSDIR=/usr/local/share/doc/XLConnect EXAMPLESDIR=/usr/local/share/examples/XLConnect WWWDIR=/usr/local/www/XLConnect ETCDIR=/usr/local/etc/XLConnect --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc12386ae247c) Target: aarch64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc12386ae247c) Target: aarch64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_53255a77=yes CC_OUTPUT_921dbbb2_911cfe02=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes CC_OUTPUT_921dbbb2_af59ad06=yes CC_OUTPUT_921dbbb2_a15f3fcf=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc12386ae247c) Target: aarch64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=aarch64 OPSYS=FreeBSD _OSRELEASE=14.0-CURRENT OSREL=14.0 OSVERSION=1400072 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 1048576 stack size (kbytes, -s) 1048576 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License GPLv3 accepted by the user =========================================================================== =================================================== ===> R-cran-XLConnect-1.0.5 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.18.4.pkg [main-arm64-default-job-01] Installing pkg-1.18.4... [main-arm64-default-job-01] Extracting pkg-1.18.4: .......... done ===> R-cran-XLConnect-1.0.5 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of R-cran-XLConnect-1.0.5 =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by R-cran-XLConnect-1.0.5 for building =========================================================================== =================================================== ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by R-cran-XLConnect-1.0.5 for building => SHA256 Checksum OK for XLConnect_1.0.5.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by R-cran-XLConnect-1.0.5 for building ===> Extracting for R-cran-XLConnect-1.0.5 => SHA256 Checksum OK for XLConnect_1.0.5.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for R-cran-XLConnect-1.0.5 ===> Applying FreeBSD patches for R-cran-XLConnect-1.0.5 from /usr/ports/math/R-cran-XLConnect/files =========================================================================== =================================================== ===> R-cran-XLConnect-1.0.5 depends on package: R-cran-rJava>0 - not found ===> Installing existing package /packages/All/R-cran-rJava-1.0.6.pkg [main-arm64-default-job-01] Installing R-cran-rJava-1.0.6... [main-arm64-default-job-01] `-- Installing R-4.2.1... [main-arm64-default-job-01] | `-- Installing cairo-1.17.4_2,3... *** caught segfault *** address 0x0, cause 'memory not mapped' Traceback: 1: .jinit(parameters = parameters) 2: .jpackage(name = pkgname, jars = "*", morePaths = sharedPaths) 3: fun(libname, pkgname) 4: doTryCatch(return(expr), name, parentenv, handler) 5: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 6: tryCatchList(expr, classes, parentenv, handlers) 7: tryCatch(fun(libname, pkgname), error = identity) 8: runHook(".onLoad", env, package.lib, package) 9: loadNamespace(package, lib.loc) 10: doTryCatch(return(expr), name, parentenv, handler) 11: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 12: tryCatchList(expr, classes, parentenv, handlers) 13: tryCatch({ attr(package, "LibPath") <- which.lib.loc ns <- loadNamespace(package, lib.loc) env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)}, error = function(e) { P <- if (!is.null(cc <- conditionCall(e))) paste(" in", deparse(cc)[1L]) else "" msg <- gettextf("package or namespace load failed for %s%s:\n %s", sQuote(package), P, conditionMessage(e)) if (logical.return && !quietly) message(paste("Error:", msg), domain = NA) else stop(msg, call. = FALSE, domain = NA)}) 14: library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE) 15: withCallingHandlers(expr, packageStartupMessage = function(c) tryInvokeRestart("muffleMessage")) 16: suppressPackageStartupMessages(library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE)) 17: doTryCatch(return(expr), name, parentenv, handler) 18: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 19: tryCatchList(expr, classes, parentenv, handlers) 20: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))}) 21: try(suppressPackageStartupMessages(library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE))) 22: tools:::.test_load_package("XLConnect", "/wrkdirs/usr/ports/math/R-cran-XLConnect/work/stage/usr/local/lib/R/library") An irrecoverable exception occurred. R is aborting now ... ** testing if installed package keeps a record of temporary installation path Warning in file(con, "rb") : cannot open file '/tmp/Rtmp8GHgFo/filebcc46b0cc068': No such file or directory Error in file(con, "rb") : cannot open the connection ** installing *source* package 'XLConnect' ... file 'R/onLoad.R' has the wrong MD5 checksum ** using staged installation ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** tests ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location OpenJDK 64-Bit Server VM warning: Attempt to allocate stack guard pages failed. *** caught segfault *** address 0x0, cause 'memory not mapped' Traceback: 1: .jinit(parameters = parameters) 2: .jpackage(name = pkgname, jars = "*", morePaths = sharedPaths) 3: fun(libname, pkgname) 4: doTryCatch(return(expr), name, parentenv, handler) 5: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 6: tryCatchList(expr, classes, parentenv, handlers) 7: tryCatch(fun(libname, pkgname), error = identity) 8: runHook(".onLoad", env, package.lib, package) 9: loadNamespace(package, lib.loc) 10: doTryCatch(return(expr), name, parentenv, handler) 11: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 12: tryCatchList(expr, classes, parentenv, handlers) 13: tryCatch({ attr(package, "LibPath") <- which.lib.loc ns <- loadNamespace(package, lib.loc) env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)}, error = function(e) { P <- if (!is.null(cc <- conditionCall(e))) paste(" in", deparse(cc)[1L]) else "" msg <- gettextf("package or namespace load failed for %s%s:\n %s", sQuote(package), P, conditionMessage(e)) if (logical.return && !quietly) message(paste("Error:", msg), domain = NA) else stop(msg, call. = FALSE, domain = NA)}) 14: library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE) 15: withCallingHandlers(expr, packageStartupMessage = function(c) tryInvokeRestart("muffleMessage")) 16: suppressPackageStartupMessages(library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE)) 17: doTryCatch(return(expr), name, parentenv, handler) 18: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 19: tryCatchList(expr, classes, parentenv, handlers) 20: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))}) 21: try(suppressPackageStartupMessages(library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE))) 22: tools:::.test_load_package("XLConnect", "/wrkdirs/usr/ports/math/R-cran-XLConnect/work/stage/usr/local/lib/R/library/00LOCK-XLConnect/00new") An irrecoverable exception occurred. R is aborting now ... ** testing if installed package can be loaded from final location OpenJDK 64-Bit Server VM warning: Attempt to allocate stack guard pages failed. *** caught segfault *** address 0x0, cause 'memory not mapped' Traceback: 1: .jinit(parameters = parameters) 2: .jpackage(name = pkgname, jars = "*", morePaths = sharedPaths) 3: fun(libname, pkgname) 4: doTryCatch(return(expr), name, parentenv, handler) 5: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 6: tryCatchList(expr, classes, parentenv, handlers) 7: tryCatch(fun(libname, pkgname), error = identity) 8: runHook(".onLoad", env, package.lib, package) 9: loadNamespace(package, lib.loc) 10: doTryCatch(return(expr), name, parentenv, handler) 11: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 12: tryCatchList(expr, classes, parentenv, handlers) 13: tryCatch({ attr(package, "LibPath") <- which.lib.loc ns <- loadNamespace(package, lib.loc) env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)}, error = function(e) { P <- if (!is.null(cc <- conditionCall(e))) paste(" in", deparse(cc)[1L]) else "" msg <- gettextf("package or namespace load failed for %s%s:\n %s", sQuote(package), P, conditionMessage(e)) if (logical.return && !quietly) message(paste("Error:", msg), domain = NA) else stop(msg, call. = FALSE, domain = NA)}) 14: library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE) 15: withCallingHandlers(expr, packageStartupMessage = function(c) tryInvokeRestart("muffleMessage")) 16: suppressPackageStartupMessages(library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE)) 17: doTryCatch(return(expr), name, parentenv, handler) 18: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 19: tryCatchList(expr, classes, parentenv, handlers) 20: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))}) 21: try(suppressPackageStartupMessages(library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE))) 22: tools:::.test_load_package("XLConnect", "/wrkdirs/usr/ports/math/R-cran-XLConnect/work/stage/usr/local/lib/R/library") An irrecoverable exception occurred. R is aborting now ... ** testing if installed package keeps a record of temporary installation path Warning in file(con, "rb") : cannot open file '/tmp/Rtmp8GHgFo/filebcc4718e94aa': No such file or directory Error in file(con, "rb") : cannot open the connection ** installing *source* package 'XLConnect' ... file 'R/onLoad.R' has the wrong MD5 checksum ** using staged installation ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** tests ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location OpenJDK 64-Bit Server VM warning: Attempt to allocate stack guard pages failed. *** caught segfault *** address 0x0, cause 'memory not mapped' Traceback: 1: .jinit(parameters = parameters) 2: .jpackage(name = pkgname, jars = "*", morePaths = sharedPaths) 3: fun(libname, pkgname) 4: doTryCatch(return(expr), name, parentenv, handler) 5: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 6: tryCatchList(expr, classes, parentenv, handlers) 7: tryCatch(fun(libname, pkgname), error = identity) 8: runHook(".onLoad", env, package.lib, package) 9: loadNamespace(package, lib.loc) 10: doTryCatch(return(expr), name, parentenv, handler) 11: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 12: tryCatchList(expr, classes, parentenv, handlers) 13: tryCatch({ attr(package, "LibPath") <- which.lib.loc ns <- loadNamespace(package, lib.loc) env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)}, error = function(e) { P <- if (!is.null(cc <- conditionCall(e))) paste(" in", deparse(cc)[1L]) else "" msg <- gettextf("package or namespace load failed for %s%s:\n %s", sQuote(package), P, conditionMessage(e)) if (logical.return && !quietly) message(paste("Error:", msg), domain = NA) else stop(msg, call. = FALSE, domain = NA)}) 14: library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE) 15: withCallingHandlers(expr, packageStartupMessage = function(c) tryInvokeRestart("muffleMessage")) 16: suppressPackageStartupMessages(library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE)) 17: doTryCatch(return(expr), name, parentenv, handler) 18: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 19: tryCatchList(expr, classes, parentenv, handlers) 20: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))}) 21: try(suppressPackageStartupMessages(library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE))) 22: tools:::.test_load_package("XLConnect", "/wrkdirs/usr/ports/math/R-cran-XLConnect/work/stage/usr/local/lib/R/library/00LOCK-XLConnect/00new") An irrecoverable exception occurred. R is aborting now ... ** testing if installed package can be loaded from final location OpenJDK 64-Bit Server VM warning: Attempt to allocate stack guard pages failed. *** caught segfault *** address 0x0, cause 'memory not mapped' Traceback: 1: .jinit(parameters = parameters) 2: .jpackage(name = pkgname, jars = "*", morePaths = sharedPaths) 3: fun(libname, pkgname) 4: doTryCatch(return(expr), name, parentenv, handler) 5: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 6: tryCatchList(expr, classes, parentenv, handlers) 7: tryCatch(fun(libname, pkgname), error = identity) 8: runHook(".onLoad", env, package.lib, package) 9: loadNamespace(package, lib.loc) 10: doTryCatch(return(expr), name, parentenv, handler) 11: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 12: tryCatchList(expr, classes, parentenv, handlers) 13: tryCatch({ attr(package, "LibPath") <- which.lib.loc ns <- loadNamespace(package, lib.loc) env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)}, error = function(e) { P <- if (!is.null(cc <- conditionCall(e))) paste(" in", deparse(cc)[1L]) else "" msg <- gettextf("package or namespace load failed for %s%s:\n %s", sQuote(package), P, conditionMessage(e)) if (logical.return && !quietly) message(paste("Error:", msg), domain = NA) else stop(msg, call. = FALSE, domain = NA)}) 14: library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE) 15: withCallingHandlers(expr, packageStartupMessage = function(c) tryInvokeRestart("muffleMessage")) 16: suppressPackageStartupMessages(library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE)) 17: doTryCatch(return(expr), name, parentenv, handler) 18: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 19: tryCatchList(expr, classes, parentenv, handlers) 20: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))}) 21: try(suppressPackageStartupMessages(library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE))) 22: tools:::.test_load_package("XLConnect", "/wrkdirs/usr/ports/math/R-cran-XLConnect/work/stage/usr/local/lib/R/library") An irrecoverable exception occurred. R is aborting now ... ** testing if installed package keeps a record of temporary installation path Warning in file(con, "rb") : cannot open file '/tmp/Rtmp8GHgFo/filebcc426eebedc': No such file or directory Error in file(con, "rb") : cannot open the connection ** installing *source* package 'XLConnect' ... file 'R/onLoad.R' has the wrong MD5 checksum mv: rename /wrkdirs/usr/ports/math/R-cran-XLConnect/work/stage/usr/local/lib/R/library/XLConnect to /wrkdirs/usr/ports/math/R-cran-XLConnect/work/stage/usr/local/lib/R/library/00LOCK-XLConnect/XLConnect/XLConnect: Directory not empty ERROR: cannot remove earlier installation, is it in use? * removing '/wrkdirs/usr/ports/math/R-cran-XLConnect/work/stage/usr/local/lib/R/library/XLConnect' * restoring previous '/wrkdirs/usr/ports/math/R-cran-XLConnect/work/stage/usr/local/lib/R/library/XLConnect' *** Error code 1 Stop. make: stopped in /usr/ports/math/R-cran-XLConnect