[package - 131i386-default][misc/xgboost] Failed for xgboost-1.7.1 in build
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Date: Sun, 13 Nov 2022 11:22:46 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: http://beefy15.nyi.freebsd.org/data/131i386-default/60bece61bcd9/logs/xgboost-1.7.1.log
Build URL: http://beefy15.nyi.freebsd.org/build.html?mastername=131i386-default&build=60bece61bcd9
Log:
=>> Building misc/xgboost
build started at Sun Nov 13 11:20:21 UTC 2022
port directory: /usr/ports/misc/xgboost
package name: xgboost-1.7.1
building for: FreeBSD 131i386-default-job-10 13.1-RELEASE-p3 FreeBSD 13.1-RELEASE-p3 i386
maintained by: yuri@FreeBSD.org
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===> Use 'make config' to modify these settings
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yuri@FreeBSD.org
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=======================<phase: check-sanity >============================
===> License APACHE20 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> xgboost-1.7.1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.18.4.pkg
[131i386-default-job-10] Installing pkg-1.18.4...
[131i386-default-job-10] Extracting pkg-1.18.4: .......... done
===> xgboost-1.7.1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of xgboost-1.7.1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License APACHE20 accepted by the user
===> Fetching all distfiles required by xgboost-1.7.1 for building
===========================================================================
=======================<phase: checksum >============================
===> License APACHE20 accepted by the user
===> Fetching all distfiles required by xgboost-1.7.1 for building
=> SHA256 Checksum OK for dmlc-xgboost-v1.7.1_GH0.tar.gz.
=> SHA256 Checksum OK for NVlabs-cub-af39ee2_GH0.tar.gz.
=> SHA256 Checksum OK for rapidsai-gputreeshap-acb5be3_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License APACHE20 accepted by the user
===> Fetching all distfiles required by xgboost-1.7.1 for building
===> Extracting for xgboost-1.7.1
=> SHA256 Checksum OK for dmlc-xgboost-v1.7.1_GH0.tar.gz.
=> SHA256 Checksum OK for NVlabs-cub-af39ee2_GH0.tar.gz.
=> SHA256 Checksum OK for rapidsai-gputreeshap-acb5be3_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for xgboost-1.7.1
===> Applying FreeBSD patches for xgboost-1.7.1 from /usr/ports/misc/xgboost/files
===========================================================================
=======================<phase: build-depends >============================
===> xgboost-1.7.1 depends on file: /usr/local/bin/cmake - not found
===> Installing existing package /packages/All/cmake-core-3.24.3_1.pkg
[131i386-default-job-10] Installing cmake-core-3.24.3_1...
[131i386-default-job-10] `-- Installing expat-2.5.0...
[131i386-default-job-10] `-- Extracting expat-2.5.0: .......... done
[131i386-default-job-10] `-- Installing jsoncpp-1.9.5...
[131i386-default-job-10] `-- Extracting jsoncpp-1.9.5: .......... done
[131i386-default-job-10] `-- Installing libuv-1.44.2...
[131i386-default-job-10] `-- Extracting libuv-1.44.2: .......... done
[131i386-default-job-10] `-- Installing rhash-1.4.3...
[131i386-default-job-10] | `-- Installing gettext-runtime-0.21...
[131i386-default-job-10] | | `-- Installing indexinfo-0.3.1...
[131i386-default-job-10] | | `-- Extracting indexinfo-0.3.1: .... done
[131i386-default-job-10] | `-- Extracting gettext-runtime-0.21: .......... done
[131i386-default-job-10] `-- Extracting rhash-1.4.3: .......... done
[131i386-default-job-10] Extracting cmake-core-3.24.3_1: .......... done
===> xgboost-1.7.1 depends on file: /usr/local/bin/cmake - found
===> Returning to build of xgboost-1.7.1
===> xgboost-1.7.1 depends on executable: ninja - not found
===> Installing existing package /packages/All/ninja-1.11.1,2.pkg
[131i386-default-job-10] Installing ninja-1.11.1,2...
[131i386-default-job-10] `-- Installing python39-3.9.15...
[131i386-default-job-10] | `-- Installing libffi-3.4.3...
[131i386-default-job-10] | `-- Extracting libffi-3.4.3: .......... done
[131i386-default-job-10] | `-- Installing mpdecimal-2.5.1...
[131i386-default-job-10] | `-- Extracting mpdecimal-2.5.1: .......... done
[131i386-default-job-10] | `-- Installing readline-8.1.2...
[131i386-default-job-10] | `-- Extracting readline-8.1.2: .......... done
[131i386-default-job-10] `-- Extracting python39-3.9.15: .......... done
[131i386-default-job-10] Extracting ninja-1.11.1,2: ........ done
=====
Message from python39-3.9.15:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py39-gdbm databases/py-gdbm@py39
py39-sqlite3 databases/py-sqlite3@py39
py39-tkinter x11-toolkits/py-tkinter@py39
===> xgboost-1.7.1 depends on executable: ninja - found
===> Returning to build of xgboost-1.7.1
===========================================================================
=======================<phase: lib-depends >============================
===> xgboost-1.7.1 depends on shared library: libdmlc.so - not found
===> Installing existing package /packages/All/dmlc-core-0.3.123.pkg
[131i386-default-job-10] Installing dmlc-core-0.3.123...
[131i386-default-job-10] Extracting dmlc-core-0.3.123: .......... done
===> xgboost-1.7.1 depends on shared library: libdmlc.so - found (/usr/local/lib/libdmlc.so)
===> Returning to build of xgboost-1.7.1
===========================================================================
=======================<phase: configure >============================
===> Configuring for xgboost-1.7.1
===> Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/misc/xgboost/work/.build
-- The CXX compiler identification is Clang 13.0.0
-- The C compiler identification is Clang 13.0.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- CMake version 3.24.3
-- Performing Test XGBOOST_MM_PREFETCH_PRESENT
-- Performing Test XGBOOST_MM_PREFETCH_PRESENT - Success
-- Performing Test XGBOOST_BUILTIN_PREFETCH_PRESENT
-- Performing Test XGBOOST_BUILTIN_PREFETCH_PRESENT - Success
-- xgboost VERSION: 1.7.1
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_COLOR_MAKEFILE
CMAKE_C_FLAGS_RELEASE
CMAKE_MODULE_LINKER_FLAGS
CMAKE_VERBOSE_MAKEFILE
FETCHCONTENT_FULLY_DISCONNECTED
-- Build files have been written to: /wrkdirs/usr/ports/misc/xgboost/work/.build
===========================================================================
=======================<phase: build >============================
===> Building for xgboost-1.7.1
[ 1% 2/71] /usr/bin/c++ -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_BUILTIN_PREFETCH_PRESENT=1 -DXGBOOST_MM_PREFETCH_PRESENT=1 -D_MWAITXINTRIN_H_INCLUDED -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.7.1/include -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.7.1/rabit/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIE -funroll-loops -pthread -std=gnu++14 -MD -MT CMakeFiles/runxgboost.dir/src/cli_main.cc.o -MF CMakeFiles/runxgboost.dir/src/cli_main.cc.o.d -o CMakeFiles/runxgboost.dir/src/cli_main.cc.o -c /wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.7.1/src/cli_main.cc
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[ 63% 46/71] /usr/bin/c++ -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_BUILTIN_PREFETCH_PRESENT=1 -DXGBOOST_MM_PREFETCH_PRESENT=1 -D_MWAITXINTRIN_H_INCLUDED -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.7.1/include -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.7.1/dmlc-core/include -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.7.1/rabit/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -funroll-loops -pthread -std=gnu++14 -MD -MT src/CMakeFiles/objxgboost.dir/metric/multiclass_metric.cc.o -MF src/CMakeFiles/objxgboost.dir/metric/multiclass_metric.cc.o.d -o src/CMakeFiles/objxgboost.dir/metric/multiclass_metric.cc.o -c /wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.7.1/src/metric/multiclass_metric.cc
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[ 66% 48/71] /usr/bin/c++ -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_BUILTIN_PREFETCH_PRESENT=1 -DXGBOOST_MM_PREFETCH_PRESENT=1 -D_MWAITXINTRIN_H_INCLUDED -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.7.1/include -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.7.1/dmlc-core/include -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.7.1/rabit/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -funroll-loops -pthread -std=gnu++14 -MD -MT src/CMakeFiles/objxgboost.dir/metric/survival_metric.cc.o -MF src/CMakeFiles/objxgboost.dir/metric/survival_metric.cc.o.d -o src/CMakeFiles/objxgboost.dir/metric/survival_metric.cc.o -c /wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.7.1/src/metric/survival_metric.cc
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[ 76% 55/71] /usr/bin/c++ -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_BUILTIN_PREFETCH_PRESENT=1 -DXGBOOST_MM_PREFETCH_PRESENT=1 -D_MWAITXINTRIN_H_INCLUDED -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.7.1/include -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.7.1/dmlc-core/include -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.7.1/rabit/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -funroll-loops -pthread -std=gnu++14 -MD -MT src/CMakeFiles/objxgboost.dir/predictor/cpu_predictor.cc.o -MF src/CMakeFiles/objxgboost.dir/predictor/cpu_predictor.cc.o.d -o src/CMakeFiles/objxgboost.dir/predictor/cpu_predictor.cc.o -c /wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.7.1/src/predictor/cpu_predictor.cc
FAILED: src/CMakeFiles/objxgboost.dir/predictor/cpu_predictor.cc.o
/usr/bin/c++ -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_BUILTIN_PREFETCH_PRESENT=1 -DXGBOOST_MM_PREFETCH_PRESENT=1 -D_MWAITXINTRIN_H_INCLUDED -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.7.1/include -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.7.1/dmlc-core/include -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.7.1/rabit/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -funroll-loops -pthread -std=gnu++14 -MD -MT src/CMakeFiles/objxgboost.dir/predictor/cpu_predictor.cc.o -MF src/CMakeFiles/objxgboost.dir/predictor/cpu_predictor.cc.o.d -o src/CMakeFiles/objxgboost.dir/predictor/cpu_predictor.cc.o -c /wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.7.1/src/predictor/cpu_predictor.cc
/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.7.1/src/predictor/cpu_predictor.cc:167:24: error: non-constant-expression cannot be narrowed from type 'unsigned long long' to 'size_t' (aka 'unsigned int') in initializer list [-Wc++11-narrowing]
size_t non_missing{beg};
^~~
/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.7.1/src/predictor/cpu_predictor.cc:167:24: note: insert an explicit cast to silence this issue
size_t non_missing{beg};
^~~
static_cast<size_t>( )
1 error generated.
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ninja: build stopped: subcommand failed.
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/misc/xgboost