[package - main-i386-default][science/py-dwave-samplers] Failed for py39-dwave-samplers-1.0.0.d1 in configure
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Date: Sat, 12 Nov 2022 05:16:51 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: http://beefy17.nyi.freebsd.org/data/main-i386-default/p297284e5a684_s5920f99d21/logs/py39-dwave-samplers-1.0.0.d1.log
Build URL: http://beefy17.nyi.freebsd.org/build.html?mastername=main-i386-default&build=p297284e5a684_s5920f99d21
Log:
=>> Building science/py-dwave-samplers
build started at Sat Nov 12 05:16:35 UTC 2022
port directory: /usr/ports/science/py-dwave-samplers
package name: py39-dwave-samplers-1.0.0.d1
building for: FreeBSD main-i386-default-job-05 14.0-CURRENT FreeBSD 14.0-CURRENT 1400073 i386
maintained by: yuri@FreeBSD.org
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=======================<phase: check-sanity >============================
===> License APACHE20 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> py39-dwave-samplers-1.0.0.d1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.18.4.pkg
[main-i386-default-job-05] Installing pkg-1.18.4...
[main-i386-default-job-05] Extracting pkg-1.18.4: .......... done
===> py39-dwave-samplers-1.0.0.d1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py39-dwave-samplers-1.0.0.d1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License APACHE20 accepted by the user
===> Fetching all distfiles required by py39-dwave-samplers-1.0.0.d1 for building
===========================================================================
=======================<phase: checksum >============================
===> License APACHE20 accepted by the user
===> Fetching all distfiles required by py39-dwave-samplers-1.0.0.d1 for building
=> SHA256 Checksum OK for dwavesystems-dwave-samplers-1.0.0.dev1_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License APACHE20 accepted by the user
===> Fetching all distfiles required by py39-dwave-samplers-1.0.0.d1 for building
===> Extracting for py39-dwave-samplers-1.0.0.d1
=> SHA256 Checksum OK for dwavesystems-dwave-samplers-1.0.0.dev1_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for py39-dwave-samplers-1.0.0.d1
===> Applying FreeBSD patches for py39-dwave-samplers-1.0.0.d1 from /usr/ports/science/py-dwave-samplers/files
===========================================================================
=======================<phase: build-depends >============================
===> py39-dwave-samplers-1.0.0.d1 depends on package: py39-dimod>0 - not found
===> Installing existing package /packages/All/py39-dimod-0.12.0.pkg
[main-i386-default-job-05] Installing py39-dimod-0.12.0...
[main-i386-default-job-05] `-- Installing py39-numpy-1.23.4,1...
[main-i386-default-job-05] | `-- Installing gcc11-11.3.0_5...
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[main-i386-default-job-05] | | `-- Installing mpc-1.2.1...
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[main-i386-default-job-05] | | `-- Extracting mpc-1.2.1: ......... done
[main-i386-default-job-05] | `-- Extracting gcc11-11.3.0_5: .......... done
[main-i386-default-job-05] | `-- Installing openblas-0.3.20,1...
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[main-i386-default-job-05] | `-- Installing py39-setuptools-63.1.0...
[main-i386-default-job-05] | | `-- Installing python39-3.9.15...
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[main-i386-default-job-05] | | `-- Installing mpdecimal-2.5.1...
[main-i386-default-job-05] | | `-- Extracting mpdecimal-2.5.1: .......... done
[main-i386-default-job-05] | | `-- Installing readline-8.1.2...
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[main-i386-default-job-05] | | `-- Extracting python39-3.9.15: .......... done
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[main-i386-default-job-05] | `-- Installing suitesparse-umfpack-5.7.9...
[main-i386-default-job-05] | | `-- Installing metis-5.1.0_9...
[main-i386-default-job-05] | | `-- Extracting metis-5.1.0_9: .......... done
[main-i386-default-job-05] | | `-- Installing suitesparse-amd-2.4.6...
[main-i386-default-job-05] | | `-- Installing suitesparse-config-5.13.0...
[main-i386-default-job-05] | | `-- Extracting suitesparse-config-5.13.0: ......... done
[main-i386-default-job-05] | | `-- Extracting suitesparse-amd-2.4.6: .......... done
[main-i386-default-job-05] | | `-- Installing suitesparse-camd-2.4.6...
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[main-i386-default-job-05] | | `-- Installing suitesparse-ccolamd-2.9.6...
[main-i386-default-job-05] | | `-- Extracting suitesparse-ccolamd-2.9.6: ........ done
[main-i386-default-job-05] | | `-- Installing suitesparse-cholmod-3.0.14...
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[main-i386-default-job-05] | | `-- Extracting suitesparse-colamd-2.9.6: ........ done
[main-i386-default-job-05] | | `-- Extracting suitesparse-cholmod-3.0.14: .......... done
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[main-i386-default-job-05] `-- Extracting py39-numpy-1.23.4,1: .......... done
[main-i386-default-job-05] Extracting py39-dimod-0.12.0: .......... done
=====
Message from gcc11-11.3.0_5:
--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc11
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
=====
Message from python39-3.9.15:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py39-gdbm databases/py-gdbm@py39
py39-sqlite3 databases/py-sqlite3@py39
py39-tkinter x11-toolkits/py-tkinter@py39
=====
Message from metis-5.1.0_9:
--
===> NOTICE:
The metis port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===> py39-dwave-samplers-1.0.0.d1 depends on package: py39-dimod>0 - found
===> Returning to build of py39-dwave-samplers-1.0.0.d1
===> py39-dwave-samplers-1.0.0.d1 depends on package: py39-numpy>=1.16,1<1.24,1 - found
===> py39-dwave-samplers-1.0.0.d1 depends on package: py39-reno>0 - not found
===> Installing existing package /packages/All/py39-reno-2.9.2_1.pkg
[main-i386-default-job-05] Installing py39-reno-2.9.2_1...
[main-i386-default-job-05] `-- Installing py39-dulwich-0.19.16...
[main-i386-default-job-05] `-- Extracting py39-dulwich-0.19.16: .......... done
[main-i386-default-job-05] `-- Installing py39-pbr-5.10.0...
[main-i386-default-job-05] `-- Extracting py39-pbr-5.10.0: .......... done
[main-i386-default-job-05] `-- Installing py39-six-1.16.0...
[main-i386-default-job-05] `-- Extracting py39-six-1.16.0: .......... done
[main-i386-default-job-05] `-- Installing py39-yaml-5.4.1...
[main-i386-default-job-05] | `-- Installing libyaml-0.2.5...
[main-i386-default-job-05] | `-- Extracting libyaml-0.2.5: ......... done
[main-i386-default-job-05] `-- Extracting py39-yaml-5.4.1: .......... done
[main-i386-default-job-05] Extracting py39-reno-2.9.2_1: .......... done
===> py39-dwave-samplers-1.0.0.d1 depends on package: py39-reno>0 - found
===> Returning to build of py39-dwave-samplers-1.0.0.d1
===> py39-dwave-samplers-1.0.0.d1 depends on executable: cython-3.9 - not found
===> Installing existing package /packages/All/py39-cython-0.29.32.pkg
[main-i386-default-job-05] Installing py39-cython-0.29.32...
[main-i386-default-job-05] Extracting py39-cython-0.29.32: .......... done
===> py39-dwave-samplers-1.0.0.d1 depends on executable: cython-3.9 - found
===> Returning to build of py39-dwave-samplers-1.0.0.d1
===> py39-dwave-samplers-1.0.0.d1 depends on package: py39-setuptools>=63.1.0 - found
===> py39-dwave-samplers-1.0.0.d1 depends on file: /usr/local/bin/python3.9 - found
===========================================================================
=======================<phase: lib-depends >============================
===========================================================================
=======================<phase: configure >============================
===> Configuring for py39-dwave-samplers-1.0.0.d1
/usr/local/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /wrkdirs/usr/ports/science/py-dwave-samplers/work-py39/dwave-samplers-1.0.0.dev1/dwave/samplers/greedy/descent.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/local/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /wrkdirs/usr/ports/science/py-dwave-samplers/work-py39/dwave-samplers-1.0.0.dev1/dwave/samplers/tabu/tabu_search.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Error compiling Cython file:
------------------------------------------------------------
..
import dimod
from dimod.binary.binary_quadratic_model import BinaryQuadraticModel
cimport numpy as np
from dimod cimport cyBQM_float64
from dimod.libcpp cimport cppBinaryQuadraticModel
^
------------------------------------------------------------
dwave/samplers/tree/sample.pyx:29:0: 'dimod/libcpp/cppBinaryQuadraticModel.pxd' not found
Error compiling Cython file:
------------------------------------------------------------
..
from dimod.libcpp cimport cppBinaryQuadraticModel
from dwave.samplers.tree.orang cimport samples_type, PyArray_ENABLEFLAGS
cdef extern from "src/include/sample.hpp":
void sampleBQM[V, B](cppBinaryQuadraticModel[B, V]& refBQM,
^
------------------------------------------------------------
dwave/samplers/tree/sample.pyx:34:25: 'cppBinaryQuadraticModel' is not a type identifier
Error compiling Cython file:
------------------------------------------------------------
..
cdef int pmrows, pmcols
cdef int* pair_pointer
cdef int prows, pcols
sampleBQM(cybqm.cppbqm,
^
------------------------------------------------------------
dwave/samplers/tree/sample.pyx:122:13: Unable to deduce type parameter B, V
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "setup.py", line 53, in <module>
ext_modules=cythonize(
File "/usr/local/lib/python3.9/site-packages/Cython/Build/Dependencies.py", line 1127, in cythonize
cythonize_one(*args)
File "/usr/local/lib/python3.9/site-packages/Cython/Build/Dependencies.py", line 1250, in cythonize_one
raise CompileError(None, pyx_file)
Cython.Compiler.Errors.CompileError: dwave/samplers/tree/sample.pyx
Compiling dwave/samplers/greedy/descent.pyx because it changed.
Compiling dwave/samplers/random/cyrandom.pyx because it changed.
Compiling dwave/samplers/sa/simulated_annealing.pyx because it changed.
Compiling dwave/samplers/tabu/tabu_search.pyx because it changed.
Compiling dwave/samplers/tree/sample.pyx because it changed.
Compiling dwave/samplers/tree/solve.pyx because it changed.
Compiling dwave/samplers/tree/utilities.pyx because it changed.
[1/7] Cythonizing dwave/samplers/greedy/descent.pyx
[2/7] Cythonizing dwave/samplers/random/cyrandom.pyx
[3/7] Cythonizing dwave/samplers/sa/simulated_annealing.pyx
[4/7] Cythonizing dwave/samplers/tabu/tabu_search.pyx
[5/7] Cythonizing dwave/samplers/tree/sample.pyx
*** Error code 1
Stop.
make: stopped in /usr/ports/science/py-dwave-samplers