From nobody Fri Nov 11 16:12:23 2022 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4N83d41YB4z4d7t5 for ; Fri, 11 Nov 2022 16:12:24 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4N83d36cgJz4PpJ for ; Fri, 11 Nov 2022 16:12:23 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1668183143; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc; bh=SqRhYHa77jTQfCPLwIgHP+KxUjN5wLVrxfyg3g0BUMc=; b=uKCqp+EdGS/eqwhL5VAxyalyuUpD2VFG7SYpk3ZWKaGtazuviiFrOc+o+vVsDeNCnUpNaR HJvpZyLRcrGI5iBYoUe0pcsUtgdcVmxfY7Ov4CsBVMd8ykNfSwVUoaOK1PCyX66u3qnwSe 035a8qEi6yLCKMlYjYVCBb/LwuCR1Dvsq3KKMqRWcgmiom+Rbu8UCTNro35WDYy+wK1t5A SprIxUH9FiZ16nF3paFKYT4EZMpD4lqYkXA+Gdq3AqJtagz3LvHrzjFMisajLoXY9sbX7j TNgAmwY6jfMab79OFGTGVJ8HlhS1xFhPFRTvskRkzRyaR2DdfLs37/hBSqqaug== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1668183143; a=rsa-sha256; cv=none; b=EpB9TF3jfTxS3DVlIizsRYCRQa0ld8eJFfxmyhhiVxRqtNS7xJizL+jjhMaos4ApTlvB8D GLl0N6K6YStNR1bZpKYb2IfWD85lMMKAt2mQ3L98657mqsPArxwmyladI2qzFNM/ST7MFl jpxPyU+x/igFiVtU+lsvuJ5bIl0YwGtLQKQ4DbEucPmJN0fUhggNYEzSfqbv+J0c8xXlqv 8zXY6QEUOV5ipw38ZH637lLHb//R33ZPP6TA1GGlZ4/0SbCHfSua9B2DspPojh610dBdMZ GGolVikNLIlQwS9njNxQ0cjlktRj+WeMKN7CXMLWcWiAW2mAVAks1IUjy93sOg== ARC-Authentication-Results: i=1; mx1.freebsd.org; none Received: from ampere3.nyi.freebsd.org (ampere3.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:26]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4N83d35gS6zpcK for ; Fri, 11 Nov 2022 16:12:23 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from ampere3.nyi.freebsd.org (localhost [127.0.0.1]) by ampere3.nyi.freebsd.org (8.16.1/8.16.1) with ESMTP id 2ABGCNrR057250 for ; Fri, 11 Nov 2022 16:12:23 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by ampere3.nyi.freebsd.org (8.16.1/8.16.1/Submit) id 2ABGCNcZ057249; Fri, 11 Nov 2022 16:12:23 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Fri, 11 Nov 2022 16:12:23 GMT From: pkg-fallout@FreeBSD.org Message-Id: <202211111612.2ABGCNcZ057249@ampere3.nyi.freebsd.org> To: pkg-fallout@FreeBSD.org Subject: [package - 131releng-armv7-default][biology/gcta] Failed for gcta-1.26.0_3 in build X-ThisMailContainsUnwantedMimeParts: N List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jwb@FreeBSD.org Log URL: http://ampere3.nyi.freebsd.org/data/131releng-armv7-default/0f24e88b3aa7/logs/gcta-1.26.0_3.log Build URL: http://ampere3.nyi.freebsd.org/build.html?mastername=131releng-armv7-default&build=0f24e88b3aa7 Log: =>> Building biology/gcta build started at Fri Nov 11 16:11:59 UTC 2022 port directory: /usr/ports/biology/gcta package name: gcta-1.26.0_3 building for: FreeBSD 131releng-armv7-default-job-07 13.1-RELEASE-p3 FreeBSD 13.1-RELEASE-p3 1301000 arm maintained by: jwb@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-21-g883afb07 Host OSVERSION: 1400063 Jail OSVERSION: 1301000 Job Id: 07 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1301000 UNAME_v=FreeBSD 13.1-RELEASE-p3 1301000 UNAME_r=13.1-RELEASE-p3 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-21-g883afb07 MASTERMNT=/usr/local/poudriere/data/.m/131releng-armv7-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/131releng-armv7-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=131releng-armv7-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/131releng-armv7-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/gcta/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/gcta/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/gcta/work/.cache HOME=/wrkdirs/usr/ports/biology/gcta/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/gcta/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/gcta/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/gcta/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/gcta/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/gcta/work/.cache HOME=/wrkdirs/usr/ports/biology/gcta/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/gcta/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/gcta/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -lopenblas -fstack-protector-strong -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9 -fopenmp -isystem /usr/ local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=13.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/gcta" EXAMPLESDIR="share/examples/gcta" DATADIR="share/gcta" WWWDIR="www/gcta" ETCDIR="etc/gcta" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/gcta DOCSDIR=/usr/local/share/doc/gcta EXAMPLESDIR=/usr/local/share/examples/gcta WWWDIR=/usr/local/www/gcta ETCDIR=/usr/local/etc/gcta --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: armv7-unknown-freebsd13.1-gnueabihf Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: armv7-unknown-freebsd13.1-gnueabihf Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_53255a77=yes CC_OUTPUT_921dbbb2_911cfe02=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes CC_OUTPUT_921dbbb2_af59ad06=yes CC_OUTPUT_921dbbb2_a15f3fcf=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: armv7-unknown-freebsd13.1-gnueabihf Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=armv7 OPSYS=FreeBSD _OSRELEASE=13.1-RELEASE-p3 OSREL=13.1 OSVERSION=1301000 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 1048576 stack size (kbytes, -s) 1048576 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License GPLv3 accepted by the user =========================================================================== =================================================== ===> gcta-1.26.0_3 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.18.4.pkg [131releng-armv7-default-job-07] Installing pkg-1.18.4... [131releng-armv7-default-job-07] Extracting pkg-1.18.4: .......... done ===> gcta-1.26.0_3 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of gcta-1.26.0_3 =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by gcta-1.26.0_3 for building =========================================================================== =================================================== ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by gcta-1.26.0_3 for building => SHA256 Checksum OK for gcta_1.26.0_src.zip. => SHA256 Checksum OK for eigen-3.3.9.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by gcta-1.26.0_3 for building ===> Extracting for gcta-1.26.0_3 => SHA256 Checksum OK for gcta_1.26.0_src.zip. => SHA256 Checksum OK for eigen-3.3.9.tar.gz. Archive: /portdistfiles/gcta_1.26.0_src.zip extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/bivar_reml.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/cdflib.h extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/CommFunc.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/CommFunc.h extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/Copyright.txt extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/data.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/dcdflib.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/dcdflib.h extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/edata.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/eigen_func.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/eigen_func.h extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/ejma.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/est_hsq.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/gbat.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/gcta.h extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/GNU_General_Public_License_v3.txt extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/grm.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/gwas_simu.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/HowToCompile.txt extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/ipmpar.h extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/joint_meta.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/ld.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/Makefile extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/mkl.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/mlm_assoc.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/option.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/popu_genet.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/raw_geno.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/read_imput.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/README.txt extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/reml_within_family.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/sbat.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/StatFunc.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/StatFunc.h extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/StrFunc.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/StrFunc.h extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/UnusedCode.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/zfstream.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/zfstream.h =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for gcta-1.26.0_3 ===> Converting DOS text files to UNIX text files ===> Applying FreeBSD patches for gcta-1.26.0_3 from /usr/ports/biology/gcta/files =========================================================================== =================================================== ===> gcta-1.26.0_3 depends on package: gmake>=4.3 - not found ===> Installing existing package /packages/All/gmake-4.3_2.pkg [131releng-armv7-default-job-07] Installing gmake-4.3_2... [131releng-armv7-default-job-07] `-- Installing gettext-runtime-0.21... [131releng-armv7-default-job-07] | `-- Installing indexinfo-0.3.1... [131releng-armv7-default-job-07] | `-- Extracting indexinfo-0.3.1: .... done [131releng-armv7-default-job-07] `-- Extracting gettext-runtime-0.21: .......... done [131releng-armv7-default-job-07] Extracting gmake-4.3_2: .......... done ===> gcta-1.26.0_3 depends on package: gmake>=4.3 - found ===> Returning to build of gcta-1.26.0_3 =========================================================================== =================================================== ===> gcta-1.26.0_3 depends on shared library: libopenblas.so - not found ===> Installing existing package /packages/All/openblas-0.3.20,1.pkg [131releng-armv7-default-job-07] Installing openblas-0.3.20,1... [131releng-armv7-default-job-07] `-- Installing gcc11-11.3.0_2... [131releng-armv7-default-job-07] | `-- Installing binutils-2.37_4,1... [131releng-armv7-default-job-07] | `-- Extracting binutils-2.37_4,1: .......... done [131releng-armv7-default-job-07] | `-- Installing gmp-6.2.1... [131releng-armv7-default-job-07] | `-- Extracting gmp-6.2.1: .......... done [131releng-armv7-default-job-07] | `-- Installing mpc-1.2.1... [131releng-armv7-default-job-07] | | `-- Installing mpfr-4.1.0_1... [131releng-armv7-default-job-07] | | `-- Extracting mpfr-4.1.0_1: .......... done [131releng-armv7-default-job-07] | `-- Extracting mpc-1.2.1: ......... done [131releng-armv7-default-job-07] `-- Extracting gcc11-11.3.0_2: .......... done [131releng-armv7-default-job-07] Extracting openblas-0.3.20,1: .......... done ===== Message from gcc11-11.3.0_2: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc11 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> gcta-1.26.0_3 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so) ===> Returning to build of gcta-1.26.0_3 =========================================================================== =================================================== ===> Configuring for gcta-1.26.0_3 =========================================================================== =================================================== ===> Building for gcta-1.26.0_3 gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0' c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9 -fopenmp -isystem /usr/local/include -c bivar_reml.cpp c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9 -fopenmp -isystem /usr/local/include -c CommFunc.cpp In file included from bivar_reml.cpp:13: In file included from ./gcta.h:26: In file included from ./StatFunc.h:19: In file included from /wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/Dense:1: /wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/Core:266:10: fatal error: 'omp.h' file not found #include ^~~~~~~ c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -I/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9 -fopenmp -isystem /usr/local/include -c eigen_func.cpp 1 error generated. gmake[1]: *** [Makefile:72: bivar_reml.o] Error 1 gmake[1]: *** Waiting for unfinished jobs.... In file included from eigen_func.cpp:11: In file included from ./eigen_func.h:20: In file included from ./StatFunc.h:19: In file included from /wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/Dense:1: /wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/Core:266:10: fatal error: 'omp.h' file not found #include ^~~~~~~ 1 error generated. gmake[1]: *** [Makefile:72: eigen_func.o] Error 1 gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0' ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/biology/gcta