From nobody Tue May 31 14:27:06 2022 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 27B051B4F22D for ; Tue, 31 May 2022 14:27:07 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4LCF3G69ldz4Snw for ; Tue, 31 May 2022 14:27:06 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy8.nyi.freebsd.org (beefy8.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:17]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id B3D9454B8 for ; Tue, 31 May 2022 14:27:06 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy8.nyi.freebsd.org (localhost [127.0.0.1]) by beefy8.nyi.freebsd.org (8.16.1/8.16.1) with ESMTP id 24VER6W4039355 for ; Tue, 31 May 2022 14:27:06 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by beefy8.nyi.freebsd.org (8.16.1/8.16.1/Submit) id 24VER6AZ039354; Tue, 31 May 2022 14:27:06 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Tue, 31 May 2022 14:27:06 GMT From: pkg-fallout@FreeBSD.org Message-Id: <202205311427.24VER6AZ039354@beefy8.nyi.freebsd.org> To: pkg-fallout@FreeBSD.org Subject: [package - 130releng-armv6-quarterly][biology/phyml] Failed for phyml-3.3.20211231,1 in build ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1654007226; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc; bh=xl8GoGnWPirJHNZ5T/tQQ8Rz882mibARl8wRcbzRcms=; b=wpITeeGafks+LGCtMdSbeBtXSxJfmnELOGvZwIyOqA06jGUn1px7jWJnn+caNIof2ip8Px sWxi0TOjPXVPEOM7NLbiWeImAXLXXAHMttnPsY9M57SwEawmIethISLiBCMBOYIg4jICSZ Cb9twHh84Y+0BZzJ3L6zXn29UjHEF8QzgHpnL2SHi6MMlvNSKOMF/R2epQSqxBMBp+GN5E tv7kFs/jlyUkMv8FaRejszZ3Hm4lXy8I4yXsfQEDhORdLjgz8D+7l7OFjWHL54RXHLtpqa P1PhHYiYY/2Mt6O5LAYmMgRwRML9w1hhfYvCV+BrkIS6moYmLpBw5YCTiNfzbw== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1654007226; a=rsa-sha256; cv=none; b=oeYpODyBgqwM2vRbLYKyxXyXIXSfKgHsCqZI3KoM6S3xkiIzgWseGHhHicQL/YkbMaz3W+ oTq8JLbcZNz5w1MBDqyInVTFDpFtbJGD/yowlnGFAPx5tGaxakJGjX2s37YL7jySPlgNdE uFO4l7ahZODtAMnGyRpd6rJwrjlsjgMgAGvZnyMXDL1Xb5K+Ef2PImZC9AUmWTgZbagQED WubNj5W5mSdQ5c8etPO/A0aW0fvJA8NmSV0QznWTJvA/7FIU02bJlP2SlCIvBdWaCL3/Z/ extRkz62bExzeyL79SoQQ7ia1VO0/votOmbQ0Bsbd0XXMMITkPHqfrX+Ma8Bzg== ARC-Authentication-Results: i=1; mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: ports@FreeBSD.org Log URL: http://beefy8.nyi.freebsd.org/data/130releng-armv6-quarterly/39e8ccaa0654/logs/phyml-3.3.20211231,1.log Build URL: http://beefy8.nyi.freebsd.org/build.html?mastername=130releng-armv6-quarterly&build=39e8ccaa0654 Log: =>> Building biology/phyml build started at Tue May 31 14:26:19 UTC 2022 port directory: /usr/ports/biology/phyml package name: phyml-3.3.20211231,1 building for: FreeBSD 130releng-armv6-quarterly-job-10 13.0-RELEASE-p11 FreeBSD 13.0-RELEASE-p11 1300139 arm maintained by: ports@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-21-g883afb07 Host OSVERSION: 1400050 Jail OSVERSION: 1300139 Job Id: 10 ---Begin Environment--- SHELL=/bin/csh UNAME_p=armv6 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o OSVERSION=1300139 UNAME_v=FreeBSD 13.0-RELEASE-p11 1300139 UNAME_r=13.0-RELEASE-p11 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local QEMU_EMULATING=1 USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-21-g883afb07 MASTERMNT=/usr/local/poudriere/data/.m/130releng-armv6-quarterly/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/130releng-armv6-quarterly/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=130releng-armv6-quarterly SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/130releng-armv6-quarterly/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for phyml-3.3.20211231,1: DOCS=on: Build and/or install documentation EXAMPLES=on: Build and/or install examples ====> MPI (Message Passing Interface) support: you can only select none or one of them MPICH=off: Parallel processing support via MPICH 3 OPENMPI=off: Parallel processing support via Open MPI ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- ports@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --disable-beagle --disable-native --disable-mpi --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/biology/phyml/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/phyml/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/phyml/work/.cache HOME=/wrkdirs/usr/ports/biology/phyml/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/phyml/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/phyml/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/phyml/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/phyml/work/.cache HOME=/wrkdirs/usr/ports/biology/phyml/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/phyml/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" PORTEXAMPLES="" OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/phyml" EXAMPLESDIR="share/examples/phyml" DATADIR="share/phyml" WWWDIR="www/phyml" ETCDIR="etc/phyml" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/phyml DOCSDIR=/usr/local/share/doc/phyml EXAMPLESDIR=/usr/local/share/examples/phyml WWWDIR=/usr/local/www/phyml ETCDIR=/usr/local/etc/phyml --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=arm MACHINE_ARCH=armv6 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_9d218390=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: armv6-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _ALTCCVERSION_9d218390=none _CXXINTERNAL_9c45a5b1=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: armv6-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin "/nxb-bin/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_9d218390_58173849=yes CC_OUTPUT_9d218390_9bdba57c=yes CC_OUTPUT_9d218390_6a4fe7f5=yes CC_OUTPUT_9d218390_6bcac02b=yes CC_OUTPUT_9d218390_67d20829=yes CC_OUTPUT_9d218390_bfa62e83=yes CC_OUTPUT_9d218390_f0b4d593=yes CC_OUTPUT_9d218390_308abb44=yes CC_OUTPUT_9d218390_f00456e5=yes CC_OUTPUT_9d218390_65ad290d=yes CC_OUTPUT_9d218390_f2776b26=yes CC_OUTPUT_9d218390_b2657cc3=yes CC_OUTPUT_9d218390_380987f7=yes CC_OUTPUT_9d218390_160933ec=yes CC_OUTPUT_9d218390_fb62803b=yes _OBJC_CCVERSION_9d218390=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: armv6-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _OBJC_ALTCCVERSION_9d218390=none ARCH=armv6 OPSYS=FreeBSD _OSRELEASE=13.0-RELEASE-p11 OSREL=13.0 OSVERSION=1300139 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> NOTICE: The phyml port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> License GPLv3 accepted by the user =========================================================================== =================================================== ===> phyml-3.3.20211231,1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.17.5_1.pkg [130releng-armv6-quarterly-job-10] Installing pkg-1.17.5_1... [130releng-armv6-quarterly-job-10] Extracting pkg-1.17.5_1: .......... done ===> phyml-3.3.20211231,1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of phyml-3.3.20211231,1 =========================================================================== [130releng-armv6-quarterly-job-10] `-- Extracting autoconf-wrapper-20131203: .......... done [130releng-armv6-quarterly-job-10] `-- Installing indexinfo-0.3.1... [130releng-armv6-quarterly-job-10] `-- Extracting indexinfo-0.3.1: .... done [130releng-armv6-quarterly-job-10] `-- Installing m4-1.4.19,1... [130releng-armv6-quarterly-job-10] | `-- Installing gettext-runtime-0.21... [130releng-armv6-quarterly-job-10] | `-- Extracting gettext-runtime-0.21: .......... done [130releng-armv6-quarterly-job-10] `-- Extracting m4-1.4.19,1: .......... done [130releng-armv6-quarterly-job-10] `-- Installing perl5-5.32.1_1... [130releng-armv6-quarterly-job-10] `-- Extracting perl5-5.32.1_1: .......... done [130releng-armv6-quarterly-job-10] Extracting autoconf-2.69_3: .......... done ===> phyml-3.3.20211231,1 depends on package: autoconf>=2.69 - found ===> Returning to build of phyml-3.3.20211231,1 ===> phyml-3.3.20211231,1 depends on package: automake>=1.16.1 - not found ===> Installing existing package /packages/All/automake-1.16.5.pkg [130releng-armv6-quarterly-job-10] Installing automake-1.16.5... [130releng-armv6-quarterly-job-10] Extracting automake-1.16.5: .......... done ===> phyml-3.3.20211231,1 depends on package: automake>=1.16.1 - found ===> Returning to build of phyml-3.3.20211231,1 ===> phyml-3.3.20211231,1 depends on executable: libtoolize - not found ===> Installing existing package /packages/All/libtool-2.4.6_1.pkg [130releng-armv6-quarterly-job-10] Installing libtool-2.4.6_1... [130releng-armv6-quarterly-job-10] Extracting libtool-2.4.6_1: .......... done ===> phyml-3.3.20211231,1 depends on executable: libtoolize - found ===> Returning to build of phyml-3.3.20211231,1 =========================================================================== =================================================== =========================================================================== =================================================== ===> Configuring for phyml-3.3.20211231,1 configure.ac:14: installing './compile' configure.ac:12: installing './config.guess' configure.ac:12: installing './config.sub' configure.ac:5: installing './install-sh' configure.ac:5: installing './missing' src/Makefile.am: installing './depcomp' configure: WARNING: unrecognized options: --disable-beagle, --disable-mpi configure: loading site script /usr/ports/Templates/config.site checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... armv6-portbld-freebsd13.0 checking host system type... armv6-portbld-freebsd13.0 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /nxb-bin/usr/bin/cc accepts -g... yes checking for /nxb-bin/usr/bin/cc option to accept ISO C89... none needed checking whether /nxb-bin/usr/bin/cc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of /nxb-bin/usr/bin/cc... gcc3 checking for log in -lm... yes checking how to run the C preprocessor... /nxb-bin/usr/bin/cpp checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for float.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... (cached) yes checking for pdflatex... no checking for latex... no configure: WARNING: Documentation will not be built! checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... (cached) yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes checking for vprintf... (cached) yes checking for _doprnt... no checking for floor... yes checking for pow... yes checking for rint... yes checking for sqrt... yes checking for strchr... (cached) yes checking for strstr... (cached) yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating doc/Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-beagle, --disable-mpi =========================================================================== =================================================== ===> Building for phyml-3.3.20211231,1 /nxb-bin/usr/bin/make all-recursive Making all in src /nxb-bin/usr/bin/cc -I. -I.. -std=c99 -O3 -fomit-frame-pointer -funroll-loops -msse3 -Wall -Winline -finline -MT main.o -MD -MP -MF .deps/main.Tpo -c -o main.o main.c cc: warning: argument unused during compilation: '-msse3' [-Wunused-command-line-argument] mv -f .deps/main.Tpo .deps/main.Po /nxb-bin/usr/bin/cc -I. -I.. -std=c99 -O3 -fomit-frame-pointer -funroll-loops -msse3 -Wall -Winline -finline -MT utilities.o -MD -MP -MF .deps/utilities.Tpo -c -o utilities.o utilities.c cc: warning: argument unused during compilation: '-msse3' [-Wunused-command-line-argument] utilities.c:3212:18: error: no member named '_tPij1' in 'struct __Tree' boot_tree->_tPij1 = tree->_tPij1; ~~~~~~~~~ ^ utilities.c:3212:47: error: no member named '_tPij1' in 'struct __Tree' boot_tree->_tPij1 = tree->_tPij1; ~~~~ ^ utilities.c:3213:18: error: no member named '_tPij2' in 'struct __Tree' boot_tree->_tPij2 = tree->_tPij2; ~~~~~~~~~ ^ utilities.c:3213:47: error: no member named '_tPij2' in 'struct __Tree' boot_tree->_tPij2 = tree->_tPij2; ~~~~ ^ utilities.c:3214:18: error: no member named '_pmat1plk1' in 'struct __Tree' boot_tree->_pmat1plk1 = tree->_pmat1plk1; ~~~~~~~~~ ^ utilities.c:3214:47: error: no member named '_pmat1plk1' in 'struct __Tree' boot_tree->_pmat1plk1 = tree->_pmat1plk1; ~~~~ ^ utilities.c:3215:18: error: no member named '_pmat2plk2' in 'struct __Tree' boot_tree->_pmat2plk2 = tree->_pmat2plk2; ~~~~~~~~~ ^ utilities.c:3215:47: error: no member named '_pmat2plk2' in 'struct __Tree' boot_tree->_pmat2plk2 = tree->_pmat2plk2; ~~~~ ^ utilities.c:3216:18: error: no member named '_plk0' in 'struct __Tree' boot_tree->_plk0 = tree->_plk0; ~~~~~~~~~ ^ utilities.c:3216:47: error: no member named '_plk0' in 'struct __Tree' boot_tree->_plk0 = tree->_plk0; ~~~~ ^ utilities.c:3219:18: error: no member named '_l_ev' in 'struct __Tree'; did you mean 'l_ev'? boot_tree->_l_ev = tree->_l_ev; ^~~~~ l_ev ./utilities.h:759:42: note: 'l_ev' declared here phydbl *p_lk_left_pi,*l_ev; ^ utilities.c:3219:47: error: no member named '_l_ev' in 'struct __Tree' boot_tree->_l_ev = tree->_l_ev; ~~~~ ^ utilities.c:3220:18: error: no member named '_r_ev' in 'struct __Tree' boot_tree->_r_ev = tree->_r_ev; ~~~~~~~~~ ^ utilities.c:3220:47: error: no member named '_r_ev' in 'struct __Tree' boot_tree->_r_ev = tree->_r_ev; ~~~~ ^ utilities.c:3221:18: error: no member named '_prod_left' in 'struct __Tree' boot_tree->_prod_left = tree->_prod_left; ~~~~~~~~~ ^ utilities.c:3221:47: error: no member named '_prod_left' in 'struct __Tree' boot_tree->_prod_left = tree->_prod_left; ~~~~ ^ utilities.c:3222:18: error: no member named '_prod_rght' in 'struct __Tree' boot_tree->_prod_rght = tree->_prod_rght; ~~~~~~~~~ ^ utilities.c:3222:47: error: no member named '_prod_rght' in 'struct __Tree' boot_tree->_prod_rght = tree->_prod_rght; ~~~~ ^ utilities.c:8896:26: warning: result of comparison of constant -1 with expression of type 'char' is always true [-Wtautological-constant-out-of-range-compare] while((c != '(') && (c != EOF)); ~ ^ ~~~ utilities.c:8898:7: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare] if(c==EOF) ~^ ~~~ utilities.c:8910:11: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare] if(c==EOF) break; ~^ ~~~ utilities.c:8917:11: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare] if(c==EOF || c==';') break; ~^ ~~~ utilities.c:9198:12: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare] if(c == EOF) break; ~ ^ ~~~ 5 warnings and 18 errors generated. *** Error code 1 Stop. make[3]: stopped in /wrkdirs/usr/ports/biology/phyml/work/phyml-3.3.20211231/src *** Error code 1 Stop. make[2]: stopped in /wrkdirs/usr/ports/biology/phyml/work/phyml-3.3.20211231 *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/biology/phyml/work/phyml-3.3.20211231 *** Error code 1 Stop. make: stopped in /usr/ports/biology/phyml