From nobody Thu May 26 20:34:13 2022 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 247341B4B45B for ; Thu, 26 May 2022 20:34:14 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4L8KR966txz3KXH for ; Thu, 26 May 2022 20:34:13 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy8.nyi.freebsd.org (beefy8.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:17]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id B1EA615186 for ; Thu, 26 May 2022 20:34:13 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy8.nyi.freebsd.org (localhost [127.0.0.1]) by beefy8.nyi.freebsd.org (8.16.1/8.16.1) with ESMTP id 24QKYDhU040486 for ; Thu, 26 May 2022 20:34:13 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by beefy8.nyi.freebsd.org (8.16.1/8.16.1/Submit) id 24QKYDZe040485; Thu, 26 May 2022 20:34:13 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Thu, 26 May 2022 20:34:13 GMT From: pkg-fallout@FreeBSD.org Message-Id: <202205262034.24QKYDZe040485@beefy8.nyi.freebsd.org> To: pkg-fallout@FreeBSD.org Subject: [package - 130releng-armv6-quarterly][biology/gcta] Failed for gcta-1.26.0_3 in build ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1653597253; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc; bh=rc+QZkail+TnVOaFRMH6ieOoti0ccUjP9afrdewOHRA=; b=LrgcjcaeqUOmiulr169fDY2PTZcr4mYliO4OqoDyl+zHiZ7U1zAH5KfbbkxXQm0TPwgLtC A7JmAD1+dBHTB9pfdm3Xmn7jkZqVD5b+deDhDqFvHFdR1YiT5o2+qsgfmZdk/6N1P1Qhj/ apMlNynNzBv1cr2JfluRPgjj0T6CD+Xfj9c2L1gBKifloTjdZepf9O/NfUzOBFIHN1GqAx B0ty51WlvdqdxdJyZ0c4Wlx0AtmKtQsLxVc32FHWPxQPmCZwDXHQEGWq0ol47Zerd8CDW7 vwsRCg05/9/hslIfPnTqT0cU/zf7mQ13vYXOSfxgjmnlIvdtr3m1JtAFhpmJmg== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1653597253; a=rsa-sha256; cv=none; b=eSY9CS3skMg/lKFS5WkD6d1VorZp93UMSRms4NLQNHpljcWKCSWO5VKlWN//PxFMHhzJ1v /61I1qwRJbIXuXWevOs+WSR/iCSaiXdFHnXmeSLaira6jNnCaLhy9x4g8ogydazuTKEBAu tKoD4n1mMiyZcPdSsN9/6Kq2Mkk9UB/+RgW9yLlOuH6gLYYNR/bX8Ci3Ja63tcvTzZ3w13 jEmVhOrsaC13sz4efXpMA2QhVHAM1yTwvdTDESO78kVqjSS3fdMuD3ms1mH7oYcxufVQw6 WG20lJ9aDv6tjoFKElsUcNhsFEOpG8zJByjhSYgqchqfwB85KDE6dqDxIXTn0A== ARC-Authentication-Results: i=1; mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jwb@FreeBSD.org Log URL: http://beefy8.nyi.freebsd.org/data/130releng-armv6-quarterly/efafb20ae538/logs/gcta-1.26.0_3.log Build URL: http://beefy8.nyi.freebsd.org/build.html?mastername=130releng-armv6-quarterly&build=efafb20ae538 Log: =>> Building biology/gcta build started at Thu May 26 20:33:36 UTC 2022 port directory: /usr/ports/biology/gcta package name: gcta-1.26.0_3 building for: FreeBSD 130releng-armv6-quarterly-job-03 13.0-RELEASE-p11 FreeBSD 13.0-RELEASE-p11 1300139 arm maintained by: jwb@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-21-g883afb07 Host OSVERSION: 1400050 Jail OSVERSION: 1300139 Job Id: 03 ---Begin Environment--- SHELL=/bin/csh UNAME_p=armv6 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o OSVERSION=1300139 UNAME_v=FreeBSD 13.0-RELEASE-p11 1300139 UNAME_r=13.0-RELEASE-p11 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local QEMU_EMULATING=1 USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-21-g883afb07 MASTERMNT=/usr/local/poudriere/data/.m/130releng-armv6-quarterly/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/130releng-armv6-quarterly/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=130releng-armv6-quarterly SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/130releng-armv6-quarterly/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/gcta/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/gcta/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/gcta/work/.cache HOME=/wrkdirs/usr/ports/biology/gcta/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/gcta/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/gcta/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/gcta/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/gcta/work/.cache HOME=/wrkdirs/usr/ports/biology/gcta/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/gcta/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -lopenblas -fstack-protector-strong -L/usr/local/lib " LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -I/usr/local/include/eigen3 -fopenmp -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/gcta" EXAMPLESDIR="share/examples/gcta" DATADIR="share/gcta" WWWDIR="www/gcta" ETCDIR="etc/gcta" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/gcta DOCSDIR=/usr/local/share/doc/gcta EXAMPLESDIR=/usr/local/share/examples/gcta WWWDIR=/usr/local/www/gcta ETCDIR=/usr/local/etc/gcta --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=arm MACHINE_ARCH=armv6 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_9d218390=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: armv6-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _ALTCCVERSION_9d218390=none _CXXINTERNAL_9c45a5b1=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: armv6-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin "/nxb-bin/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_9d218390_58173849=yes CC_OUTPUT_9d218390_9bdba57c=yes CC_OUTPUT_9d218390_6a4fe7f5=yes CC_OUTPUT_9d218390_6bcac02b=yes CC_OUTPUT_9d218390_67d20829=yes CC_OUTPUT_9d218390_bfa62e83=yes CC_OUTPUT_9d218390_f0b4d593=yes CC_OUTPUT_9d218390_308abb44=yes CC_OUTPUT_9d218390_f00456e5=yes CC_OUTPUT_9d218390_65ad290d=yes CC_OUTPUT_9d218390_f2776b26=yes CC_OUTPUT_9d218390_b2657cc3=yes CC_OUTPUT_9d218390_380987f7=yes CC_OUTPUT_9d218390_160933ec=yes CC_OUTPUT_9d218390_fb62803b=yes _OBJC_CCVERSION_9d218390=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: armv6-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _OBJC_ALTCCVERSION_9d218390=none ARCH=armv6 OPSYS=FreeBSD _OSRELEASE=13.0-RELEASE-p11 OSREL=13.0 OSVERSION=1300139 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License GPLv3 accepted by the user =========================================================================== =================================================== ===> gcta-1.26.0_3 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.17.5_1.pkg [130releng-armv6-quarterly-job-03] Installing pkg-1.17.5_1... [130releng-armv6-quarterly-job-03] Extracting pkg-1.17.5_1: .......... done ===> gcta-1.26.0_3 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of gcta-1.26.0_3 =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by gcta-1.26.0_3 for building =========================================================================== =================================================== ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by gcta-1.26.0_3 for building => SHA256 Checksum OK for gcta_1.26.0_src.zip. =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by gcta-1.26.0_3 for building ===> Extracting for gcta-1.26.0_3 => SHA256 Checksum OK for gcta_1.26.0_src.zip. /usr/bin/unzip -d /wrkdirs/usr/ports/biology/gcta/work/gcta_1.26.0_src /portdistfiles/gcta_1.26.0_src.zip Archive: /portdistfiles/gcta_1.26.0_src.zip extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta_1.26.0_src/bivar_reml.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta_1.26.0_src/cdflib.h extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta_1.26.0_src/CommFunc.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta_1.26.0_src/CommFunc.h extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta_1.26.0_src/Copyright.txt extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta_1.26.0_src/data.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta_1.26.0_src/dcdflib.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta_1.26.0_src/dcdflib.h extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta_1.26.0_src/edata.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta_1.26.0_src/eigen_func.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta_1.26.0_src/eigen_func.h extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta_1.26.0_src/ejma.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta_1.26.0_src/est_hsq.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta_1.26.0_src/gbat.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta_1.26.0_src/gcta.h extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta_1.26.0_src/GNU_General_Public_License_v3.txt extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta_1.26.0_src/grm.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta_1.26.0_src/gwas_simu.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta_1.26.0_src/HowToCompile.txt extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta_1.26.0_src/ipmpar.h extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta_1.26.0_src/joint_meta.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta_1.26.0_src/ld.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta_1.26.0_src/Makefile extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta_1.26.0_src/mkl.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta_1.26.0_src/mlm_assoc.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta_1.26.0_src/option.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta_1.26.0_src/popu_genet.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta_1.26.0_src/raw_geno.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta_1.26.0_src/read_imput.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta_1.26.0_src/README.txt extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta_1.26.0_src/reml_within_family.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta_1.26.0_src/sbat.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta_1.26.0_src/StatFunc.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta_1.26.0_src/StatFunc.h extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta_1.26.0_src/StrFunc.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta_1.26.0_src/StrFunc.h extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta_1.26.0_src/UnusedCode.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta_1.26.0_src/zfstream.cpp extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta_1.26.0_src/zfstream.h =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for gcta-1.26.0_3 ===> Converting DOS text files to UNIX text files ===> Applying FreeBSD patches for gcta-1.26.0_3 from /usr/ports/biology/gcta/files =========================================================================== =================================================== ===> gcta-1.26.0_3 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - not found ===> Installing existing package /packages/All/eigen-3.3.9_1.pkg [130releng-armv6-quarterly-job-03] Installing eigen-3.3.9_1... [130releng-armv6-quarterly-job-03] `-- Installing blas-3.10.0... [130releng-armv6-quarterly-job-03] | `-- Installing gcc10-10.3.0... [130releng-armv6-quarterly-job-03] | | `-- Installing binutils-2.37_2,1... [130releng-armv6-quarterly-job-03] | | `-- Installing gettext-runtime-0.21... [130releng-armv6-quarterly-job-03] | | | `-- Installing indexinfo-0.3.1... [130releng-armv6-quarterly-job-03] | | | `-- Extracting indexinfo-0.3.1: .... done [130releng-armv6-quarterly-job-03] | | `-- Extracting gettext-runtime-0.21: .......... done [130releng-armv6-quarterly-job-03] | | `-- Extracting binutils-2.37_2,1: .......... done [130releng-armv6-quarterly-job-03] | | `-- Installing gmp-6.2.1... [130releng-armv6-quarterly-job-03] | | `-- Extracting gmp-6.2.1: .......... done [130releng-armv6-quarterly-job-03] | | `-- Installing mpc-1.2.1... [130releng-armv6-quarterly-job-03] | | `-- Installing mpfr-4.1.0_1... [130releng-armv6-quarterly-job-03] | | `-- Extracting mpfr-4.1.0_1: .......... done [130releng-armv6-quarterly-job-03] | | `-- Extracting mpc-1.2.1: ......... done [130releng-armv6-quarterly-job-03] | `-- Extracting gcc10-10.3.0: .......... done [130releng-armv6-quarterly-job-03] `-- Extracting blas-3.10.0: ........ done [130releng-armv6-quarterly-job-03] `-- Installing lapack-3.10.0_1... [130releng-armv6-quarterly-job-03] `-- Extracting lapack-3.10.0_1: .......... done [130releng-armv6-quarterly-job-03] Extracting eigen-3.3.9_1: .......... done ===== Message from gcc10-10.3.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc10 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> gcta-1.26.0_3 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - found ===> Returning to build of gcta-1.26.0_3 ===> gcta-1.26.0_3 depends on package: gmake>=4.3 - not found ===> Installing existing package /packages/All/gmake-4.3_2.pkg [130releng-armv6-quarterly-job-03] Installing gmake-4.3_2... [130releng-armv6-quarterly-job-03] Extracting gmake-4.3_2: .......... done ===> gcta-1.26.0_3 depends on package: gmake>=4.3 - found ===> Returning to build of gcta-1.26.0_3 =========================================================================== =================================================== ===> gcta-1.26.0_3 depends on shared library: libopenblas.so - not found ===> Installing existing package /packages/All/openblas-0.3.20,1.pkg [130releng-armv6-quarterly-job-03] Installing openblas-0.3.20,1... [130releng-armv6-quarterly-job-03] Extracting openblas-0.3.20,1: .......... done ===> gcta-1.26.0_3 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so) ===> Returning to build of gcta-1.26.0_3 =========================================================================== =================================================== ===> Configuring for gcta-1.26.0_3 =========================================================================== =================================================== ===> Building for gcta-1.26.0_3 gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/gcta/work/gcta_1.26.0_src' /nxb-bin/usr/bin/c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -I/usr/local/include/eigen3 -fopenmp -isystem /usr/local/include -c bivar_reml.cpp In file included from bivar_reml.cpp:13: In file included from ./gcta.h:26: In file included from ./StatFunc.h:19: In file included from /usr/local/include/eigen3/Eigen/Dense:1: /usr/local/include/eigen3/Eigen/Core:266:10: fatal error: 'omp.h' file not found #include ^~~~~~~ 1 error generated. gmake[1]: *** [Makefile:72: bivar_reml.o] Error 1 gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/gcta/work/gcta_1.26.0_src' *** Error code 1 Stop. make: stopped in /usr/ports/biology/gcta