[package - main-i386-default][math/py-fastcluster] Failed for py38-fastcluster-1.2.6 in build
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Date: Sat, 26 Mar 2022 22:37:22 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: sunpoet@FreeBSD.org
Log URL: http://beefy17.nyi.freebsd.org/data/main-i386-default/p60ab72786154_s0868f62176/logs/py38-fastcluster-1.2.6.log
Build URL: http://beefy17.nyi.freebsd.org/build.html?mastername=main-i386-default&build=p60ab72786154_s0868f62176
Log:
=>> Building math/py-fastcluster
build started at Sat Mar 26 22:37:04 UTC 2022
port directory: /usr/ports/math/py-fastcluster
package name: py38-fastcluster-1.2.6
building for: FreeBSD main-i386-default-job-03 14.0-CURRENT FreeBSD 14.0-CURRENT 1400053 i386
maintained by: sunpoet@FreeBSD.org
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sunpoet@FreeBSD.org
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# XXX: We really need this but cannot use it while 'make checksum' does not
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CC_OUTPUT_921dbbb2_58173849=yes
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CC_OUTPUT_921dbbb2_160933ec=yes
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--End resource limits--
=======================<phase: check-sanity >============================
===> License BSD2CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> py38-fastcluster-1.2.6 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.17.5_1.pkg
[main-i386-default-job-03] Installing pkg-1.17.5_1...
[main-i386-default-job-03] Extracting pkg-1.17.5_1: .......... done
===> py38-fastcluster-1.2.6 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py38-fastcluster-1.2.6
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License BSD2CLAUSE accepted by the user
=> fastcluster-1.2.6.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch https://files.pythonhosted.org/packages/source/f/fastcluster/fastcluster-1.2.6.tar.gz
fastcluster-1.2.6.tar.gz 169 kB 41 MBps 00s
===> Fetching all distfiles required by py38-fastcluster-1.2.6 for building
===========================================================================
=======================<phase: checksum >============================
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py38-fastcluster-1.2.6 for building
=> SHA256 Checksum OK for fastcluster-1.2.6.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py38-fastcluster-1.2.6 for building
===> Extracting for py38-fastcluster-1.2.6
=> SHA256 Checksum OK for fastcluster-1.2.6.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for py38-fastcluster-1.2.6
===========================================================================
=======================<phase: build-depends >============================
===> py38-fastcluster-1.2.6 depends on package: py38-numpy>=0,1 - not found
===> Installing existing package /packages/All/py38-numpy-1.20.3,1.pkg
[main-i386-default-job-03] Installing py38-numpy-1.20.3,1...
[main-i386-default-job-03] `-- Installing gcc10-10.3.0...
[main-i386-default-job-03] | `-- Installing binutils-2.37_2,1...
[main-i386-default-job-03] | | `-- Installing gettext-runtime-0.21...
[main-i386-default-job-03] | | `-- Installing indexinfo-0.3.1...
[main-i386-default-job-03] | | `-- Extracting indexinfo-0.3.1: .... done
[main-i386-default-job-03] | | `-- Extracting gettext-runtime-0.21: .......... done
[main-i386-default-job-03] | `-- Extracting binutils-2.37_2,1: .......... done
[main-i386-default-job-03] | `-- Installing gmp-6.2.1...
[main-i386-default-job-03] | `-- Extracting gmp-6.2.1: .......... done
[main-i386-default-job-03] | `-- Installing mpc-1.2.1...
[main-i386-default-job-03] | | `-- Installing mpfr-4.1.0_1...
[main-i386-default-job-03] | | `-- Extracting mpfr-4.1.0_1: .......... done
[main-i386-default-job-03] | `-- Extracting mpc-1.2.1: ......... done
[main-i386-default-job-03] `-- Extracting gcc10-10.3.0: .......... done
[main-i386-default-job-03] `-- Installing openblas-0.3.18,1...
[main-i386-default-job-03] `-- Extracting openblas-0.3.18,1: .......... done
[main-i386-default-job-03] `-- Installing py38-setuptools-57.0.0...
[main-i386-default-job-03] | `-- Installing python38-3.8.13...
[main-i386-default-job-03] | | `-- Installing libffi-3.3_1...
[main-i386-default-job-03] | | `-- Extracting libffi-3.3_1: .......... done
[main-i386-default-job-03] | | `-- Installing mpdecimal-2.5.1...
[main-i386-default-job-03] | | `-- Extracting mpdecimal-2.5.1: .......... done
[main-i386-default-job-03] | | `-- Installing readline-8.1.2...
[main-i386-default-job-03] | | `-- Extracting readline-8.1.2: .......... done
[main-i386-default-job-03] | `-- Extracting python38-3.8.13: .......... done
[main-i386-default-job-03] `-- Extracting py38-setuptools-57.0.0: .......... done
[main-i386-default-job-03] `-- Installing suitesparse-umfpack-5.7.9...
[main-i386-default-job-03] | `-- Installing metis-5.1.0_9...
[main-i386-default-job-03] | `-- Extracting metis-5.1.0_9: .......... done
[main-i386-default-job-03] | `-- Installing suitesparse-amd-2.4.6...
[main-i386-default-job-03] | | `-- Installing suitesparse-config-5.10.1...
[main-i386-default-job-03] | | `-- Extracting suitesparse-config-5.10.1: ......... done
[main-i386-default-job-03] | `-- Extracting suitesparse-amd-2.4.6: .......... done
[main-i386-default-job-03] | `-- Installing suitesparse-camd-2.4.6...
[main-i386-default-job-03] | `-- Extracting suitesparse-camd-2.4.6: ......... done
[main-i386-default-job-03] | `-- Installing suitesparse-ccolamd-2.9.6...
[main-i386-default-job-03] | `-- Extracting suitesparse-ccolamd-2.9.6: ........ done
[main-i386-default-job-03] | `-- Installing suitesparse-cholmod-3.0.14...
[main-i386-default-job-03] | | `-- Installing suitesparse-colamd-2.9.6...
[main-i386-default-job-03] | | `-- Extracting suitesparse-colamd-2.9.6: ........ done
[main-i386-default-job-03] | `-- Extracting suitesparse-cholmod-3.0.14: .......... done
[main-i386-default-job-03] `-- Extracting suitesparse-umfpack-5.7.9: .......... done
[main-i386-default-job-03] Extracting py38-numpy-1.20.3,1: .......... done
=====
Message from gcc10-10.3.0:
--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc10
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
=====
Message from python38-3.8.13:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py38-gdbm databases/py-gdbm@py38
py38-sqlite3 databases/py-sqlite3@py38
py38-tkinter x11-toolkits/py-tkinter@py38
=====
Message from metis-5.1.0_9:
--
===> NOTICE:
The metis port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===> py38-fastcluster-1.2.6 depends on package: py38-numpy>=0,1 - found
===> Returning to build of py38-fastcluster-1.2.6
===> py38-fastcluster-1.2.6 depends on package: py38-setuptools>0 - found
===> py38-fastcluster-1.2.6 depends on file: /usr/local/bin/python3.8 - found
===========================================================================
=======================<phase: lib-depends >============================
===========================================================================
=======================<phase: configure >============================
===> Configuring for py38-fastcluster-1.2.6
Fastcluster version: 1.2.6
Python version: 3.8.13 (default, Mar 26 2022, 01:22:51)
[Clang 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a
running config
===========================================================================
=======================<phase: build >============================
===> Building for py38-fastcluster-1.2.6
Fastcluster version: 1.2.6
Python version: 3.8.13 (default, Mar 26 2022, 01:22:51)
[Clang 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a
running build
running build_py
creating build
creating build/lib.freebsd-14.0-CURRENT-i386-3.8
copying fastcluster.py -> build/lib.freebsd-14.0-CURRENT-i386-3.8
running build_ext
building '_fastcluster' extension
creating build/temp.freebsd-14.0-CURRENT-i386-3.8
creating build/temp.freebsd-14.0-CURRENT-i386-3.8/src
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.8/site-packages/numpy/core/include -I/usr/local/include/python3.8 -c src/fastcluster_python.cpp -o build/temp.freebsd-14.0-CURRENT-i386-3.8/src/fastcluster_python.o
In file included from src/fastcluster_python.cpp:62:
src/fastcluster.cpp:53:9: warning: Use fenv header. [-W#pragma-messages]
#pragma message("Use fenv header.")
^
Assertion failed: ((CGF.CurFuncDecl == nullptr || CGF.Builder.getIsFPConstrained() || isa<CXXConstructorDecl>(CGF.CurFuncDecl) || isa<CXXDestructorDecl>(CGF.CurFuncDecl) || (NewExceptionBehavior == llvm::fp::ebIgnore && NewRoundingBehavior == llvm::RoundingMode::NearestTiesToEven)) && "FPConstrained should be enabled on entire function"), function ConstructorHelper, file /usr/local/poudriere/jails/main-i386/usr/src/contrib/llvm-project/clang/lib/CodeGen/CodeGenFunction.cpp, line 174.
PLEASE submit a bug report to https://bugs.freebsd.org/submit/ and include the crash backtrace, preprocessed source, and associated run script.
Stack dump:
0. Program arguments: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.8/site-packages/numpy/core/include -I/usr/local/include/python3.8 -c src/fastcluster_python.cpp -o build/temp.freebsd-14.0-CURRENT-i386-3.8/src/fastcluster_python.o
1. <eof> parser at end of file
2. Per-file LLVM IR generation
3. /usr/include/c++/v1/string:1578:10: Generating code for declaration 'std::basic_string<char>::__init'
#0 0x04c0a994 (/usr/bin/cc+0x4c0a994)
#1 0x04c0ae70 (/usr/bin/cc+0x4c0ae70)
#2 0x04c08b0e (/usr/bin/cc+0x4c08b0e)
#3 0x04ba4ca4 (/usr/bin/cc+0x4ba4ca4)
#4 0x04ba4e74 (/usr/bin/cc+0x4ba4e74)
#5 0x26267da9 (/lib/libthr.so.3+0x18da9)
#6 0x26267273 (/lib/libthr.so.3+0x18273)
#7 0xffffe234 ([vdso]+0x234)
#8 0x264bb30f _thr_kill (/lib/libc.so.7+0x12130f)
#9 0x264384fb _raise (/lib/libc.so.7+0x9e4fb)
#10 0x264e3ffb abort (/lib/libc.so.7+0x149ffb)
#11 0x2641ccdc (/lib/libc.so.7+0x82cdc)
#12 0x02672e3d (/usr/bin/cc+0x2672e3d)
#13 0x02672910 (/usr/bin/cc+0x2672910)
#14 0x0264cf66 (/usr/bin/cc+0x264cf66)
#15 0x0267e640 (/usr/bin/cc+0x267e640)
#16 0x0268dc97 (/usr/bin/cc+0x268dc97)
#17 0x0268cea8 (/usr/bin/cc+0x268cea8)
#18 0x0269804f (/usr/bin/cc+0x269804f)
#19 0x0267c9be (/usr/bin/cc+0x267c9be)
#20 0x0267d500 (/usr/bin/cc+0x267d500)
#21 0x021f843e (/usr/bin/cc+0x21f843e)
#22 0x021f12c3 (/usr/bin/cc+0x21f12c3)
#23 0x021e5056 (/usr/bin/cc+0x21e5056)
#24 0x021e507f (/usr/bin/cc+0x21e507f)
#25 0x021e507f (/usr/bin/cc+0x21e507f)
#26 0x021e507f (/usr/bin/cc+0x21e507f)
#27 0x021e507f (/usr/bin/cc+0x21e507f)
#28 0x021e507f (/usr/bin/cc+0x21e507f)
#29 0x021e34b4 (/usr/bin/cc+0x21e34b4)
#30 0x02ca3a5c (/usr/bin/cc+0x2ca3a5c)
#31 0x02ca1197 (/usr/bin/cc+0x2ca1197)
#32 0x03138a5c (/usr/bin/cc+0x3138a5c)
#33 0x02becc14 (/usr/bin/cc+0x2becc14)
#34 0x02c9f81a (/usr/bin/cc+0x2c9f81a)
#35 0x02bec4fa (/usr/bin/cc+0x2bec4fa)
#36 0x02b6fcfe (/usr/bin/cc+0x2b6fcfe)
#37 0x02c9b457 (/usr/bin/cc+0x2c9b457)
#38 0x02192349 (/usr/bin/cc+0x2192349)
#39 0x021a01b9 (/usr/bin/cc+0x21a01b9)
#40 0x02a39d33 (/usr/bin/cc+0x2a39d33)
#41 0x04ba4bd1 (/usr/bin/cc+0x4ba4bd1)
#42 0x02a399a1 (/usr/bin/cc+0x2a399a1)
#43 0x02a0b16e (/usr/bin/cc+0x2a0b16e)
#44 0x02a0b5a0 (/usr/bin/cc+0x2a0b5a0)
#45 0x02a1f789 (/usr/bin/cc+0x2a1f789)
cc: error: clang frontend command failed with exit code 134 (use -v to see invocation)
FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303)
Target: i386-unknown-freebsd14.0
Thread model: posix
InstalledDir: /usr/bin
cc: note: diagnostic msg:
********************
PLEASE ATTACH THE FOLLOWING FILES TO THE BUG REPORT:
Preprocessed source(s) and associated run script(s) are located at:
cc: note: diagnostic msg: /tmp/fastcluster_python-5ffacd.cpp
cc: note: diagnostic msg: /tmp/fastcluster_python-5ffacd.sh
cc: note: diagnostic msg:
********************
error: command 'cc' failed with exit status 134
*** Error code 1
Stop.
make: stopped in /usr/ports/math/py-fastcluster