From nobody Sun Jun 26 02:24:15 2022 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id A2D268A6F84 for ; Sun, 26 Jun 2022 02:24:15 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4LVvnC2h7zz3M9D for ; Sun, 26 Jun 2022 02:24:15 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy12.nyi.freebsd.org (beefy12.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:1b]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 3C0711085C for ; Sun, 26 Jun 2022 02:24:15 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy12.nyi.freebsd.org (localhost [127.0.0.1]) by beefy12.nyi.freebsd.org (8.16.1/8.16.1) with ESMTP id 25Q2OFjZ065175 for ; Sun, 26 Jun 2022 02:24:15 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by beefy12.nyi.freebsd.org (8.16.1/8.16.1/Submit) id 25Q2OFpx065174; Sun, 26 Jun 2022 02:24:15 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Sun, 26 Jun 2022 02:24:15 GMT From: pkg-fallout@FreeBSD.org Message-Id: <202206260224.25Q2OFpx065174@beefy12.nyi.freebsd.org> To: pkg-fallout@FreeBSD.org Subject: [package - 130releng-armv7-quarterly][science/py-PyNE] Failed for py38-PyNE-0.7.6 in configure ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1656210255; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc; bh=NxdPQQqFUHLxx0Uj9QH3XJIwUagkdTReCSeKPh5NJhw=; b=RCw2ZDOE2ZcEyZuyZF6RKwbbGKfxHGNPPT7SV0i93vphMMKRCf1Pi+xmh+InvRhJ+Qfjzv +NKHjdIjGW3Miu5J01rSMXOQwWjcqkvMgfSqS1yrArpLdFcmePX6O7eCkvb8mC2JqTEl3k +0nFKpQcabUqvVTCiCjorTVJnf/xgD3ny16mwE4oop7kN4QI4vpJTb7g/z3X+2vvE0sL4d 2PIzfrO43aAQ5OYp6/2YkTDLJ1nUWaDBcNSRn3l+tDvOeVGf9ihP3kjEgvVZaLrS7MH63f qoBfWW+oiPGLBPrmu5SIukcN2kZNhr5BSHL+BsayuCgyxSVyhvNYKu4lCfOsjQ== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1656210255; a=rsa-sha256; cv=none; b=dHEwb5wnNZKWqTXg1aFNhA8lOj75E3m2s3/dXSpMxzKu4CuzQFFqS2gwK8d939/U1vKVg/ r5SAKK95kEhJCou0PJzdSsBlBN4Yh/T4E4tdmPi7AAyoZE7QOk8sp7FLv+bISZOhz0CiNY rZ0MmX4ykZwYBJpUHJXmqT5DuiSwt3GuD0XYfeVjQ4AvcSsCwpXBKue9gNGICGOZzHQB75 WpM4i72P1kbuse1owRgksNEioJMplF8d0242GR/svYorwrO7gUU/6jqVj65TrLVmgkoibK frFwzxIoKuKmD47vCH572I7lfLeVB6pHz7L51H95qH+aBuwmyrxWIjBnMZaW/A== ARC-Authentication-Results: i=1; mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: http://beefy12.nyi.freebsd.org/data/130releng-armv7-quarterly/df2a077922c4/logs/py38-PyNE-0.7.6.log Build URL: http://beefy12.nyi.freebsd.org/build.html?mastername=130releng-armv7-quarterly&build=df2a077922c4 Log: =>> Building science/py-PyNE build started at Sun Jun 26 02:10:57 UTC 2022 port directory: /usr/ports/science/py-PyNE package name: py38-PyNE-0.7.6 building for: FreeBSD 130releng-armv7-quarterly-job-08 13.0-RELEASE-p11 FreeBSD 13.0-RELEASE-p11 1300139 arm maintained by: yuri@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-21-g883afb07 Host OSVERSION: 1400050 Jail OSVERSION: 1300139 Job Id: 08 ---Begin Environment--- SHELL=/bin/csh UNAME_p=armv7 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o OSVERSION=1300139 UNAME_v=FreeBSD 13.0-RELEASE-p11 1300139 UNAME_r=13.0-RELEASE-p11 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local QEMU_EMULATING=1 USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-21-g883afb07 MASTERMNT=/usr/local/poudriere/data/.m/130releng-armv7-quarterly/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/130releng-armv7-quarterly/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=130releng-armv7-quarterly SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/130releng-armv7-quarterly/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py38 DEPENDS_ARGS= MAKE_ARGS= FLAVOR=py38 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran10" FC="gfortran10" FFLAGS="-O -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc10" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc10" PYTHON="/usr/local/bin/python3.8" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-PyNE/work-py38 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-PyNE/work-py38 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-PyNE/work-py38/.cache HOME=/wrkdirs/usr/ports/science/py-PyNE/work-py38 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-PyNE/work-py38/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- DESTDIR=/wrkdirs/usr/ports/science/py-PyNE/work-py38/stage F77="gfortran10" FC="gfortran10" FFLAGS="-O -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc10" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc10" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-PyNE/work-py38 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-PyNE/work-py38 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-PyNE/work-py38/.cache HOME=/wrkdirs/usr/ports/science/py-PyNE/work-py38 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-PyNE/work-py38/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/ bin/size" STRINGS="/usr/local/bin/strings" LDSHARED="/nxb-bin/usr/bin/cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc10 -L/usr/local/lib/gcc10 -B/usr/local/bin -fstack-protector-strong " LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.8 PYTHON_LIBDIR=lib/python3.8 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.8/site-packages PYTHON_SUFFIX=38 PYTHON_EXT_SUFFIX=.cpython-38 PYTHON_VER=3.8 PYTHON_VERSION=python3.8 PYTHON2="@comment " PYTHON3="" OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/PyNE" EXAMPLESDIR="share/examples/PyNE" DATADIR="share/PyNE" WWWDIR="www/PyNE" ETCDIR="etc/PyNE" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/PyNE DOCSDIR=/usr/local/share/doc/PyNE EXAMPLESDIR=/usr/local/share/examples/PyNE WWWDIR=/usr/local/www/PyNE ETCDIR=/usr/local/etc/PyNE --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=arm MACHINE_ARCH=armv7 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_9d218390=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: armv7-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _ALTCCVERSION_9d218390=none _CXXINTERNAL_9c45a5b1=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: armv7-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin "/nxb-bin/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_9d218390_58173849=yes CC_OUTPUT_9d218390_9bdba57c=yes CC_OUTPUT_9d218390_6a4fe7f5=yes CC_OUTPUT_9d218390_6bcac02b=yes CC_OUTPUT_9d218390_67d20829=yes CC_OUTPUT_9d218390_bfa62e83=yes CC_OUTPUT_9d218390_f0b4d593=yes CC_OUTPUT_9d218390_308abb44=yes CC_OUTPUT_9d218390_f00456e5=yes CC_OUTPUT_9d218390_65ad290d=yes CC_OUTPUT_9d218390_f2776b26=yes CC_OUTPUT_9d218390_b2657cc3=yes CC_OUTPUT_9d218390_380987f7=yes CC_OUTPUT_9d218390_160933ec=yes CC_OUTPUT_9d218390_fb62803b=yes _OBJC_CCVERSION_9d218390=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: armv7-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _OBJC_ALTCCVERSION_9d218390=none ARCH=armv7 OPSYS=FreeBSD _OSRELEASE=13.0-RELEASE-p11 OSREL=13.0 OSVERSION=1300139 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License BSD2CLAUSE accepted by the user =========================================================================== =================================================== ===> py38-PyNE-0.7.6 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.17.5_1.pkg [130releng-armv7-quarterly-job-08] Installing pkg-1.17.5_1... [130releng-armv7-quarterly-job-08] Extracting pkg-1.17.5_1: .......... done ===> py38-PyNE-0.7.6 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py38-PyNE-0.7.6 =========================================================================== =================================================== =========================================================================== =================================================== ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by py38-PyNE-0.7.6 for building =========================================================================== =================================================== ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by py38-PyNE-0.7.6 for building => SHA256 Checksum OK for PyNE-0.7.6/decay.tar.gz. => SHA256 Checksum OK for PyNE-0.7.6/cram.tar.gz. => SHA256 Checksum OK for PyNE-0.7.6/decay-linux-clang.tar.gz. => SHA256 Checksum OK for PyNE-0.7.6/cram-linux-clang.tar.gz. => SHA256 Checksum OK for PyNE-0.7.6/prebuilt_nuc_data.h5. => SHA256 Checksum OK for PyNE-0.7.6/pyne-pyne-0.7.6_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== -- The CXX compiler identification is Clang 11.0.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /nxb-bin/usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /nxb-bin/usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test COMPILER_SUPPORTS_CXX11 -- Performing Test COMPILER_SUPPORTS_CXX11 - Success / \ ) (( )) ( (@) /|\ ))_(( /|\ |-| / | \ (/\|/\) / | \ (@) | | -------------------/--|-voV---\`|'/--Vov-|--\---------------------|-| |-| '^` (o o) '^` | | | | `\Y/' |-| |-| | | | | /\ ___ __ __ /\ |-| |-| /^~\ / _ \_ _ /\ \ \/__\ /^~\ | | | | /^~\ / /_)/ | | |/ \/ /_\ /^~\ |-| |-| /^~\ / ___/| |_| / /\ //__ /^~\ | | | | ^||` \/ \__, \_\ \/\__/ ^||` |-| |-| || |____/ || | | | | ==== ==== |-| |-| | | | | |-| |-|___________________________________________________________________| | (@) l /\ / ( ( \ /\ l `\|-| l / V \ \ V \ l (@) l/ _) )_ \I `\ /' ` -- Pyne platform defined as: __LINUX__ -- Checking whether to build spatial solvers -- -- Checking CMAKE_CXX_COMPILER_ID: Clang -- Build spatial solvers: false -- Build type: Release -- PyNE Fast Compile: FALSE -- CMAKE_INSTALL_RPATH: /usr/local/lib:/nxb-bin/usr/lib -- The ASM compiler identification is Clang with GNU-like command-line -- Found assembler: /nxb-bin/usr/bin/cc -- CMake Install Prefix: /usr/local -- Dependency Root Dir (DEPS_ROOT_DIR): /nxb-bin/usr -- Dependency Hints (DEPS_HINTS): HINTS;/nxb-bin/usr -- Dependency Binary Hints (DEPS_BIN_HINTS): HINTS;/nxb-bin/usr;/nxb-bin/usr/bin -- Dependency Library Hints (DEPS_LIB_HINTS): HINTS;/nxb-bin/usr;/nxb-bin/usr/lib -- Dependency Include Hints (DEPS_INCLUDE_HINTS): HINTS;/nxb-bin/usr/include -- HDF5 Root: /usr/local -- Found HDF5: /usr/local/lib/libhdf5.so;/usr/local/lib/libhdf5_hl.so;/usr/local/lib/libhdf5.so;/usr/local/lib/libsz.so;/usr/lib/libz.so;/usr/lib/libdl.so;/usr/lib/libm.so (found version "1.10.6") -- HDF5 Include directory: /usr/local/include -- HDF5 Library directories: /usr/local/lib -- HDF5 Libraries: /usr/local/lib/libhdf5.so;/usr/local/lib/libsz.so;/usr/lib/libz.so;/usr/lib/libdl.so;/usr/lib/libm.so -- HDF5 library version: 1.10.6 -- MOAB Root: /usr/local -- Found MOAB: /usr/local/lib/libMOAB.so -- MOAB header files: /usr/local/include -- MOAB library: /usr/local/lib/libMOAB.so -- MOAB Found: TRUE -- Found PythonInterp: /usr/local/bin/python3.8 (found version "3.8.13") -- Found PythonLibs: /usr/local/lib/libpython3.8.so (found version "3.8.13") -- PYTHON_EXECUTABLE: /usr/local/bin/python3.8 -- PYTHON_SITE_PACKAGES: /usr/local/lib/python3.8/site-packages -- NUMPY_VERSION_STRING = 1.22.4 -- Found Numpy: 1.22.4 -- The Fortran compiler identification is GNU 10.3.0 -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /usr/local/bin/gfortran10 - skipped -- CMAKE_Fortran_IMPLICIT_LINK_DIRECTORIES: /usr/local/lib/gcc10;/usr/local/bin;/usr/local/lib/gcc10/gcc/armv7-portbld-freebsd13.0/10.3.0;/usr/local/armv7-portbld-freebsd13.0/lib -- CMAKE_Fortran_IMPLICIT_LINK_LIBRARIES: gfortran;m;ssp_nonshared;gcc;gcc_s;m;gcc;gcc_s;c;gcc;gcc_s -- Found Cython: /usr/local/bin/cython -- LIBS: /usr/local/lib/libhdf5.so;/usr/local/lib/libsz.so;/usr/lib/libz.so;/usr/lib/libdl.so;/usr/lib/libm.so;/usr/local/lib/libpython3.8.so -- Extracting decay.tar.gz x decay.h x decay.cpp -- Extracting decay-linux-clang.tar.gz x decay-linux-clang.s -- Extracting cram.tar.gz x cram.c x cram.h -- Extracting cram-linux-clang.tar.gz x cram-linux-clang.s -- Not fast compiling decay.cpp since PyNE fast compile is disabled. -- Not fast compiling cram.c since PyNE fast compile is disabled. -- Include paths for /wrkdirs/usr/ports/science/py-PyNE/work-py38/pyne-0.7.6/src: /usr/local/include;/usr/local/include;/usr/local/lib/python3.8/site-packages/numpy/core/include;/wrkdirs/usr/ports/science/py-PyNE/work-py38/pyne-0.7.6/build/pyne;/wrkdirs/usr/ports/science/py-PyNE/work-py38/pyne-0.7.6/src -- Include paths for /wrkdirs/usr/ports/science/py-PyNE/work-py38/pyne-0.7.6/pyne: /usr/local/include;/usr/local/include;/usr/local/lib/python3.8/site-packages/numpy/core/include;/wrkdirs/usr/ports/science/py-PyNE/work-py38/pyne-0.7.6/build/pyne;/wrkdirs/usr/ports/science/py-PyNE/work-py38/pyne-0.7.6/src -- Modules to Cythonize: ace;bins;data;dtypes;endf;enrichment;extra_types;jsoncpp;material;material_library;nucname;particle;pyne_config;rxname;source;stlcontainers;tally;transmuters;_utils;source_sampling -- F2PY F90 FLAGS: -- Include paths for /wrkdirs/usr/ports/science/py-PyNE/work-py38/pyne-0.7.6/pyne/xs: /usr/local/include;/usr/local/include;/usr/local/lib/python3.8/site-packages/numpy/core/include;/wrkdirs/usr/ports/science/py-PyNE/work-py38/pyne-0.7.6/build/pyne;/wrkdirs/usr/ports/science/py-PyNE/work-py38/pyne-0.7.6/src -- Configuring done -- Generating done -- Build files have been written to: /wrkdirs/usr/ports/science/py-PyNE/work-py38/pyne-0.7.6/build [ -3%] Built target ReplicatePythonSourceTree Scanning dependencies of target pyne [ -3%] Building C object src/CMakeFiles/pyne.dir/cram.c.o [ -3%] Building CXX object src/CMakeFiles/pyne.dir/decay.cpp.o [ -3%] Building CXX object src/CMakeFiles/pyne.dir/atomic_data.cpp.o [ -3%] Building CXX object src/CMakeFiles/pyne.dir/data.cpp.o [ -3%] Building CXX object src/CMakeFiles/pyne.dir/enrichment.cpp.o [ -3%] Building CXX object src/CMakeFiles/pyne.dir/enrichment_cascade.cpp.o [ -3%] Building CXX object src/CMakeFiles/pyne.dir/enrichment_symbolic.cpp.o [ -3%] Building CXX object src/CMakeFiles/pyne.dir/jsoncpp.cpp.o /wrkdirs/usr/ports/science/py-PyNE/work-py38/pyne-0.7.6/src/jsoncpp.cpp:2123:74: warning: implicit conversion from 'const Json::Int64' (aka 'const long long') to 'double' changes value from 9223372036854775807 to 9223372036854775808 [-Wimplicit-const-int-float-conversion] JSON_ASSERT_MESSAGE( value_.real_ >= minInt64 && value_.real_ <= maxInt64, "Real out of Int64 range" ); ~~ ^~~~~~~~ /wrkdirs/usr/ports/science/py-PyNE/work-py38/pyne-0.7.6/src/jsoncpp.cpp:1429:58: note: expanded from macro 'JSON_ASSERT_MESSAGE' #define JSON_ASSERT_MESSAGE( condition, message ) if (!( condition )) JSON_FAIL_MESSAGE( message ) ^~~~~~~~~ /wrkdirs/usr/ports/science/py-PyNE/work-py38/pyne-0.7.6/src/jsoncpp.cpp:2149:67: warning: implicit conversion from 'const Json::UInt64' (aka 'const unsigned long long') to 'double' changes value from 18446744073709551615 to 18446744073709551616 [-Wimplicit-const-int-float-conversion] JSON_ASSERT_MESSAGE( value_.real_ >= 0 && value_.real_ <= maxUInt64, "Real out of UInt64 range" ); ~~ ^~~~~~~~~ /wrkdirs/usr/ports/science/py-PyNE/work-py38/pyne-0.7.6/src/jsoncpp.cpp:1429:58: note: expanded from macro 'JSON_ASSERT_MESSAGE' #define JSON_ASSERT_MESSAGE( condition, message ) if (!( condition )) JSON_FAIL_MESSAGE( message ) ^~~~~~~~~ 2 warnings generated. [ -3%] Building CXX object src/CMakeFiles/pyne.dir/jsoncustomwriter.cpp.o [ -3%] Building CXX object src/CMakeFiles/pyne.dir/material.cpp.o [ -3%] Building CXX object src/CMakeFiles/pyne.dir/material_library.cpp.o [ -3%] Building CXX object src/CMakeFiles/pyne.dir/nucname.cpp.o [ -3%] Building CXX object src/CMakeFiles/pyne.dir/particle.cpp.o [ -3%] Building CXX object src/CMakeFiles/pyne.dir/source.cpp.o In file included from /wrkdirs/usr/ports/science/py-PyNE/work-py38/pyne-0.7.6/src/source.cpp:10: /wrkdirs/usr/ports/science/py-PyNE/work-py38/pyne-0.7.6/src/source.h:35:32: warning: non-void function does not return a value [-Wreturn-type] virtual std::string fluka() {} ^ 1 warning generated. [ -3%] Building CXX object src/CMakeFiles/pyne.dir/rxname.cpp.o [ -3%] Building CXX object src/CMakeFiles/pyne.dir/tally.cpp.o [ -3%] Building CXX object src/CMakeFiles/pyne.dir/transmuters.cpp.o [ -3%] Building CXX object src/CMakeFiles/pyne.dir/utils.cpp.o [ -3%] Building Fortran object src/CMakeFiles/pyne.dir/endftod.f90.o [ -3%] Building CXX object src/CMakeFiles/pyne.dir/measure.cpp.o [ -3%] Building CXX object src/CMakeFiles/pyne.dir/source_sampling.cpp.o In file included from /wrkdirs/usr/ports/science/py-PyNE/work-py38/pyne-0.7.6/src/source_sampling.cpp:2: /wrkdirs/usr/ports/science/py-PyNE/work-py38/pyne-0.7.6/src/source_sampling.h:78:23: warning: 'read_e_bounds' has C-linkage specified, but returns incomplete type 'std::vector' which could be incompatible with C [-Wreturn-type-c-linkage] std::vector read_e_bounds(std::string e_bounds_file); ^ 1 warning generated. [ -3%] Linking CXX shared library libpyne.so CMakeFiles/pyne.dir/cram.c.o: in function `pyne_cram_solve_complex': cram.c:(.text+0x58a3cc): relocation truncated to fit: R_ARM_CALL against symbol `__muldc3' defined in .text section in /usr/local/lib/gcc10/gcc/armv7-portbld-freebsd13.0/10.3.0/libgcc.a(_muldc3.o) cram.c:(.text+0x58a654): relocation truncated to fit: R_ARM_CALL against symbol `__muldc3' defined in .text section in /usr/local/lib/gcc10/gcc/armv7-portbld-freebsd13.0/10.3.0/libgcc.a(_muldc3.o) cram.c:(.text+0x58a7f4): relocation truncated to fit: R_ARM_CALL against symbol `__muldc3' defined in .text section in /usr/local/lib/gcc10/gcc/armv7-portbld-freebsd13.0/10.3.0/libgcc.a(_muldc3.o) cram.c:(.text+0x58a988): relocation truncated to fit: R_ARM_CALL against symbol `__muldc3' defined in .text section in /usr/local/lib/gcc10/gcc/armv7-portbld-freebsd13.0/10.3.0/libgcc.a(_muldc3.o) cram.c:(.text+0x58ab1c): relocation truncated to fit: R_ARM_CALL against symbol `__muldc3' defined in .text section in /usr/local/lib/gcc10/gcc/armv7-portbld-freebsd13.0/10.3.0/libgcc.a(_muldc3.o) cram.c:(.text+0x58acb0): relocation truncated to fit: R_ARM_CALL against symbol `__muldc3' defined in .text section in /usr/local/lib/gcc10/gcc/armv7-portbld-freebsd13.0/10.3.0/libgcc.a(_muldc3.o) cram.c:(.text+0x58ae44): relocation truncated to fit: R_ARM_CALL against symbol `__muldc3' defined in .text section in /usr/local/lib/gcc10/gcc/armv7-portbld-freebsd13.0/10.3.0/libgcc.a(_muldc3.o) cram.c:(.text+0x58afd8): relocation truncated to fit: R_ARM_CALL against symbol `__muldc3' defined in .text section in /usr/local/lib/gcc10/gcc/armv7-portbld-freebsd13.0/10.3.0/libgcc.a(_muldc3.o) cram.c:(.text+0x58b170): relocation truncated to fit: R_ARM_CALL against symbol `__muldc3' defined in .text section in /usr/local/lib/gcc10/gcc/armv7-portbld-freebsd13.0/10.3.0/libgcc.a(_muldc3.o) cram.c:(.text+0x58b2cc): relocation truncated to fit: R_ARM_CALL against symbol `__muldc3' defined in .text section in /usr/local/lib/gcc10/gcc/armv7-portbld-freebsd13.0/10.3.0/libgcc.a(_muldc3.o) cram.c:(.text+0x58b410): additional relocation overflows omitted from the output c++: error: linker command failed with exit code 1 (use -v to see invocation) *** Error code 1 Stop. make[3]: stopped in /wrkdirs/usr/ports/science/py-PyNE/work-py38/pyne-0.7.6/build *** Error code 1 Stop. make[2]: stopped in /wrkdirs/usr/ports/science/py-PyNE/work-py38/pyne-0.7.6/build *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/science/py-PyNE/work-py38/pyne-0.7.6/build setup.py:38: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses import imp Traceback (most recent call last): File "", line 1, in File "setup.py", line 419, in main() File "setup.py", line 403, in main main_safe(ns) File "setup.py", line 395, in main_safe main_body(ns) File "setup.py", line 378, in main_body rtn = subprocess.check_call(['make'] + ns.make_args, cwd=ns.build_dir) File "/usr/local/lib/python3.8/subprocess.py", line 364, in check_call raise CalledProcessError(retcode, cmd) subprocess.CalledProcessError: Command '['make']' returned non-zero exit status 1. Writing atomic_data.h Writing atomic_data.cpp CMake command is cmake .. -DCMAKE_INSTALL_PREFIX=/usr/local -DHDF5_ROOT=/usr/local -DHDF5_LIBRARIES=/usr/local/lib/libhdf5.so;/usr/local/lib/libhdf5_hl.so -DHDF5_LIBRARY_DIRS=/usr/local/lib -DHDF5_INCLUDE_DIRS=/usr/local/include -DWITH_MOAB=ON -DMOAB_ROOT=/usr/local -DPYNE_FAST_COMPILE=FALSE -DENABLE_SPATIAL_SOLVERS=ON -DPYTHON_EXECUTABLE=/usr/local/bin/python3.8 -------------------- If you are having issues building pyne, please report your problem to pyne-dev@googlegroups.com or look for help at http://pyne.io -------------------- *** Error code 1 Stop. make: stopped in /usr/ports/science/py-PyNE