[package - 123i386-quarterly][math/py-pdal] Failed for py38-pdal-3.0.2 in build
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Date: Tue, 07 Jun 2022 23:40:17 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: lbartoletti@FreeBSD.org
Log URL: http://beefy4.nyi.freebsd.org/data/123i386-quarterly/8881304545b5/logs/py38-pdal-3.0.2.log
Build URL: http://beefy4.nyi.freebsd.org/build.html?mastername=123i386-quarterly&build=8881304545b5
Log:
=>> Building math/py-pdal
build started at Tue Jun 7 23:39:07 UTC 2022
port directory: /usr/ports/math/py-pdal
package name: py38-pdal-3.0.2
building for: FreeBSD 123i386-quarterly-job-03 12.3-RELEASE-p5 FreeBSD 12.3-RELEASE-p5 i386
maintained by: lbartoletti@FreeBSD.org
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=======================<phase: check-sanity >============================
===> License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> py38-pdal-3.0.2 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.17.5_1.pkg
[123i386-quarterly-job-03] Installing pkg-1.17.5_1...
[123i386-quarterly-job-03] Extracting pkg-1.17.5_1: .......... done
===> py38-pdal-3.0.2 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py38-pdal-3.0.2
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py38-pdal-3.0.2 for building
===========================================================================
=======================<phase: checksum >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py38-pdal-3.0.2 for building
=> SHA256 Checksum OK for PDAL-3.0.2.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py38-pdal-3.0.2 for building
===> Extracting for py38-pdal-3.0.2
=> SHA256 Checksum OK for PDAL-3.0.2.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for py38-pdal-3.0.2
===> Applying FreeBSD patches for py38-pdal-3.0.2 from /usr/ports/math/py-pdal/files
===========================================================================
=======================<phase: build-depends >============================
===> py38-pdal-3.0.2 depends on package: py38-numpy>=1.16,1<1.23,1 - not found
===> Installing existing package /packages/All/py38-numpy-1.22.4,1.pkg
[123i386-quarterly-job-03] Installing py38-numpy-1.22.4,1...
[123i386-quarterly-job-03] `-- Installing gcc10-10.3.0...
[123i386-quarterly-job-03] | `-- Installing binutils-2.37_2,1...
[123i386-quarterly-job-03] | | `-- Installing gettext-runtime-0.21...
[123i386-quarterly-job-03] | | `-- Installing indexinfo-0.3.1...
[123i386-quarterly-job-03] | | `-- Extracting indexinfo-0.3.1: .... done
[123i386-quarterly-job-03] | | `-- Extracting gettext-runtime-0.21: .......... done
[123i386-quarterly-job-03] | `-- Extracting binutils-2.37_2,1: .......... done
[123i386-quarterly-job-03] | `-- Installing gmp-6.2.1...
[123i386-quarterly-job-03] | `-- Extracting gmp-6.2.1: .......... done
[123i386-quarterly-job-03] | `-- Installing mpc-1.2.1...
[123i386-quarterly-job-03] | | `-- Installing mpfr-4.1.0_1...
[123i386-quarterly-job-03] | | `-- Extracting mpfr-4.1.0_1: .......... done
<snip>
If LONG_PCF_NAMES port's option was enabled, the PCF family names may include
the foundry and information whether they contain wide characters. For example,
"Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at
run time with using pcf:no-long-family-names property, if needed. Example:
FREETYPE_PROPERTIES=pcf:no-long-family-names=1
How to recreate fontconfig cache with using such environment variable,
if needed:
# env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv
The controllable properties are listed in the section "Controlling FreeType
Modules" in the reference's table of contents
(/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed).
=====
Message from postgresql13-client-13.6:
--
The PostgreSQL port has a collection of "side orders":
postgresql-docs
For all of the html documentation
p5-Pg
A perl5 API for client access to PostgreSQL databases.
postgresql-tcltk
If you want tcl/tk client support.
postgresql-jdbc
For Java JDBC support.
postgresql-odbc
For client access from unix applications using ODBC as access
method. Not needed to access unix PostgreSQL servers from Win32
using ODBC. See below.
ruby-postgres, py-psycopg2
For client access to PostgreSQL databases using the ruby & python
languages.
postgresql-plperl, postgresql-pltcl & postgresql-plruby
For using perl5, tcl & ruby as procedural languages.
postgresql-contrib
Lots of contributed utilities, postgresql functions and
datatypes. There you find pg_standby, pgcrypto and many other cool
things.
etc...
===> py38-pdal-3.0.2 depends on shared library: libpdal_base.so - found (/usr/local/lib/libpdal_base.so)
===> Returning to build of py38-pdal-3.0.2
===========================================================================
=======================<phase: configure >============================
===> Configuring for py38-pdal-3.0.2
running config
===========================================================================
=======================<phase: build >============================
===> Building for py38-pdal-3.0.2
Not searching for unused variables given on the command line.
-- The C compiler identification is Clang 10.0.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- The CXX compiler identification is Clang 10.0.1
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Configuring done
-- Generating done
-- Build files have been written to: /wrkdirs/usr/ports/math/py-pdal/work-py38/PDAL-3.0.2/_cmake_test_compile/build
-- The C compiler identification is Clang 10.0.1
-- The CXX compiler identification is Clang 10.0.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found Python3: /usr/local/bin/python3.8 (found version "3.8.13") found components: Interpreter Development NumPy Development.Module Development.Embed
-- Performing Test HAS_FLTO
-- Performing Test HAS_FLTO - Success
-- Performing Test HAS_FLTO_THIN
-- Performing Test HAS_FLTO_THIN - Success
-- Found pybind11: /usr/local/include (found version "2.9.1")
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
PYTHON_EXECUTABLE
PYTHON_INCLUDE_DIR
PYTHON_LIBRARY
PYTHON_VERSION_STRING
SKBUILD
-- Build files have been written to: /wrkdirs/usr/ports/math/py-pdal/work-py38/PDAL-3.0.2/_skbuild/freebsd-12.3-RELEASE-p5-i386-3.8/cmake-build
[ 16% 4/6] Building CXX object CMakeFiles/libpdalpython.dir/pdal/PyArray.cpp.o
In file included from /wrkdirs/usr/ports/math/py-pdal/work-py38/PDAL-3.0.2/pdal/PyArray.cpp:35:
In file included from /wrkdirs/usr/ports/math/py-pdal/work-py38/PDAL-3.0.2/pdal/PyArray.hpp:39:
In file included from /usr/local/lib/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:1960:
/usr/local/lib/python3.8/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
^
1 warning generated.
[ 33% 4/6] Building CXX object CMakeFiles/libpdalpython.dir/pdal/StreamableExecutor.cpp.o
In file included from /wrkdirs/usr/ports/math/py-pdal/work-py38/PDAL-3.0.2/pdal/StreamableExecutor.cpp:35:
In file included from /wrkdirs/usr/ports/math/py-pdal/work-py38/PDAL-3.0.2/pdal/PyPipeline.hpp:38:
In file included from /usr/local/lib/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:5:
In file included from /usr/local/lib/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /usr/local/lib/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:1960:
/usr/local/lib/python3.8/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
^
1 warning generated.
[ 50% 4/6] Building CXX object CMakeFiles/libpdalpython.dir/pdal/PyPipeline.cpp.o
In file included from /wrkdirs/usr/ports/math/py-pdal/work-py38/PDAL-3.0.2/pdal/PyPipeline.cpp:35:
In file included from /wrkdirs/usr/ports/math/py-pdal/work-py38/PDAL-3.0.2/pdal/PyArray.hpp:39:
In file included from /usr/local/lib/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:1960:
/usr/local/lib/python3.8/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
^
1 warning generated.
[ 66% 4/6] Building CXX object CMakeFiles/libpdalpython.dir/pdal/libpdalpython.cpp.o
In file included from /wrkdirs/usr/ports/math/py-pdal/work-py38/PDAL-3.0.2/pdal/libpdalpython.cpp:8:
In file included from /wrkdirs/usr/ports/math/py-pdal/work-py38/PDAL-3.0.2/pdal/PyArray.hpp:39:
In file included from /usr/local/lib/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:1960:
/usr/local/lib/python3.8/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
^
1 warning generated.
[ 83% 5/6] Linking CXX shared module libpdalpython.cpython-38.so
FAILED: libpdalpython.cpython-38.so
: && /usr/bin/c++ -fPIC -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O3 -DNDEBUG -fstack-protector-strong -flto -shared -o libpdalpython.cpython-38.so CMakeFiles/libpdalpython.dir/pdal/PyArray.cpp.o CMakeFiles/libpdalpython.dir/pdal/PyPipeline.cpp.o CMakeFiles/libpdalpython.dir/pdal/StreamableExecutor.cpp.o CMakeFiles/libpdalpython.dir/pdal/libpdalpython.cpp.o -Wl,-rpath,/usr/local/lib: /usr/local/lib/libpdal_base.so.13.0.0 /usr/local/lib/libpdal_util.so.13.0.0 && cd /wrkdirs/usr/ports/math/py-pdal/work-py38/PDAL-3.0.2/_skbuild/freebsd-12.3-RELEASE-p5-i386-3.8/cmake-build && /usr/bin/strip /wrkdirs/usr/ports/math/py-pdal/work-py38/PDAL-3.0.2/_skbuild/freebsd-12.3-RELEASE-p5-i386-3.8/cmake-build/libpdalpython.cpython-38.so
Stack dump:
0. Program arguments: /usr/bin/ld --eh-frame-hdr -Bshareable --hash-style=both --enable-new-dtags -m elf_i386_fbsd -o libpdalpython.cpython-38.so /usr/lib/crti.o /usr/lib/crtbeginS.o -L/usr/lib -plugin /usr/bin/../lib/LLVMgold.so -plugin-opt=mcpu=i686 -plugin-opt=O3 CMakeFiles/libpdalpython.dir/pdal/PyArray.cpp.o CMakeFiles/libpdalpython.dir/pdal/PyPipeline.cpp.o CMakeFiles/libpdalpython.dir/pdal/StreamableExecutor.cpp.o CMakeFiles/libpdalpython.dir/pdal/libpdalpython.cpp.o -rpath /usr/local/lib: /usr/local/lib/libpdal_base.so.13.0.0 /usr/local/lib/libpdal_util.so.13.0.0 -lc++ -lm -lgcc --as-needed -lgcc_s --no-as-needed -lc -lgcc --as-needed -lgcc_s --no-as-needed /usr/lib/crtendS.o /usr/lib/crtn.o
1. Running pass 'Function Pass Manager' on module 'ld-temp.o'.
2. Running pass 'Combine redundant instructions' on function '@_GLOBAL__sub_I_PyArray.cpp'
#0 0x01c031d4 (/usr/bin/ld+0x1c031d4)
#1 0x01c035de (/usr/bin/ld+0x1c035de)
#2 0x01c0129e (/usr/bin/ld+0x1c0129e)
#3 0x01c03d78 (/usr/bin/ld+0x1c03d78)
#4 0x02c40049 (/usr/bin/ld+0x2c40049)
c++: error: unable to execute command: Segmentation fault (core dumped)
c++: error: linker command failed due to signal (use -v to see invocation)
ninja: build stopped: subcommand failed.
File "/usr/local/lib/python3.8/site-packages/skbuild/setuptools_wrap.py", line 595, in setup
cmkr.make(make_args, env=env)
File "/usr/local/lib/python3.8/site-packages/skbuild/cmaker.py", line 609, in make
raise SKBuildError(
An error occurred while building with CMake.
Command:
cmake --build . --target install --config Release --
Source directory:
/wrkdirs/usr/ports/math/py-pdal/work-py38/PDAL-3.0.2
Working directory:
/wrkdirs/usr/ports/math/py-pdal/work-py38/PDAL-3.0.2/_skbuild/freebsd-12.3-RELEASE-p5-i386-3.8/cmake-build
Please see CMake's output for more information.
--------------------------------------------------------------------------------
-- Trying "Ninja" generator
--------------------------------
---------------------------
----------------------
-----------------
------------
-------
--
--
-------
------------
-----------------
----------------------
---------------------------
--------------------------------
-- Trying "Ninja" generator - success
--------------------------------------------------------------------------------
Configuring Project
Working directory:
/wrkdirs/usr/ports/math/py-pdal/work-py38/PDAL-3.0.2/_skbuild/freebsd-12.3-RELEASE-p5-i386-3.8/cmake-build
Command:
cmake /wrkdirs/usr/ports/math/py-pdal/work-py38/PDAL-3.0.2 -G Ninja -DCMAKE_INSTALL_PREFIX:PATH=/wrkdirs/usr/ports/math/py-pdal/work-py38/PDAL-3.0.2/_skbuild/freebsd-12.3-RELEASE-p5-i386-3.8/cmake-install -DPYTHON_EXECUTABLE:FILEPATH=/usr/local/bin/python3.8 -DPYTHON_VERSION_STRING:STRING=3.8.13 -DPYTHON_INCLUDE_DIR:PATH=/usr/local/include/python3.8 -DPYTHON_LIBRARY:FILEPATH=/usr/local/lib/libpython3.8.so -DSKBUILD:INTERNAL=TRUE -DCMAKE_MODULE_PATH:PATH=/usr/local/lib/python3.8/site-packages/skbuild/resources/cmake -DCMAKE_BUILD_TYPE:STRING=Release
Traceback (most recent call last):
*** Error code 1
Stop.
make: stopped in /usr/ports/math/py-pdal