[package - main-amd64-default][math/py-fastcluster] Failed for py38-fastcluster-1.2.6 in build
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Date: Sat, 04 Jun 2022 19:06:27 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: sunpoet@FreeBSD.org
Log URL: http://beefy18.nyi.freebsd.org/data/main-amd64-default/p429f3de9bdcd_s2573e6ced9/logs/py38-fastcluster-1.2.6.log
Build URL: http://beefy18.nyi.freebsd.org/build.html?mastername=main-amd64-default&build=p429f3de9bdcd_s2573e6ced9
Log:
=>> Building math/py-fastcluster
build started at Sat Jun 4 19:06:20 UTC 2022
port directory: /usr/ports/math/py-fastcluster
package name: py38-fastcluster-1.2.6
building for: FreeBSD main-amd64-default-job-04 14.0-CURRENT FreeBSD 14.0-CURRENT 1400059 amd64
maintained by: sunpoet@FreeBSD.org
Makefile ident:
Poudriere version: 3.2.8-21-g883afb07
Host OSVERSION: 1400050
Jail OSVERSION: 1400059
Job Id: 04
!!! Jail is newer than host. (Jail: 1400059, Host: 1400050) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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--MAINTAINER--
sunpoet@FreeBSD.org
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#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
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#### /usr/ports/Mk/Scripts/ports_env.sh ####
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CC_OUTPUT_921dbbb2_58173849=yes
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CC_OUTPUT_921dbbb2_65ad290d=yes
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CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=yes
CC_OUTPUT_921dbbb2_160933ec=yes
CC_OUTPUT_921dbbb2_fb62803b=yes
_OBJC_CCVERSION_921dbbb2=FreeBSD clang version 14.0.3 (https://github.com/llvm/llvm-project.git llvmorg-14.0.3-0-g1f9140064dfb) Target: x86_64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin
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core file size (512-blocks, -c) unlimited
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pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===> License BSD2CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> py38-fastcluster-1.2.6 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.17.5_1.pkg
[main-amd64-default-job-04] Installing pkg-1.17.5_1...
[main-amd64-default-job-04] Extracting pkg-1.17.5_1: .......... done
===> py38-fastcluster-1.2.6 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py38-fastcluster-1.2.6
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py38-fastcluster-1.2.6 for building
===========================================================================
=======================<phase: checksum >============================
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py38-fastcluster-1.2.6 for building
=> SHA256 Checksum OK for fastcluster-1.2.6.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py38-fastcluster-1.2.6 for building
===> Extracting for py38-fastcluster-1.2.6
=> SHA256 Checksum OK for fastcluster-1.2.6.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for py38-fastcluster-1.2.6
===========================================================================
=======================<phase: build-depends >============================
===> py38-fastcluster-1.2.6 depends on package: py38-numpy>=0,1 - not found
===> Installing existing package /packages/All/py38-numpy-1.22.4,1.pkg
[main-amd64-default-job-04] Installing py38-numpy-1.22.4,1...
[main-amd64-default-job-04] `-- Installing gcc10-10.3.0...
[main-amd64-default-job-04] | `-- Installing binutils-2.37_2,1...
[main-amd64-default-job-04] | | `-- Installing gettext-runtime-0.21...
[main-amd64-default-job-04] | | `-- Installing indexinfo-0.3.1...
[main-amd64-default-job-04] | | `-- Extracting indexinfo-0.3.1: .... done
[main-amd64-default-job-04] | | `-- Extracting gettext-runtime-0.21: .......... done
[main-amd64-default-job-04] | `-- Extracting binutils-2.37_2,1: .......... done
[main-amd64-default-job-04] | `-- Installing gmp-6.2.1...
[main-amd64-default-job-04] | `-- Extracting gmp-6.2.1: .......... done
[main-amd64-default-job-04] | `-- Installing mpc-1.2.1...
[main-amd64-default-job-04] | | `-- Installing mpfr-4.1.0_1...
[main-amd64-default-job-04] | | `-- Extracting mpfr-4.1.0_1: .......... done
[main-amd64-default-job-04] | `-- Extracting mpc-1.2.1: ......... done
[main-amd64-default-job-04] `-- Extracting gcc10-10.3.0: .......... done
[main-amd64-default-job-04] `-- Installing openblas-0.3.20,1...
[main-amd64-default-job-04] `-- Extracting openblas-0.3.20,1: .......... done
[main-amd64-default-job-04] `-- Installing py38-setuptools-62.1.0...
[main-amd64-default-job-04] | `-- Installing python38-3.8.13_2...
[main-amd64-default-job-04] | | `-- Installing libffi-3.4.2...
[main-amd64-default-job-04] | | `-- Extracting libffi-3.4.2: .......... done
[main-amd64-default-job-04] | | `-- Installing mpdecimal-2.5.1...
[main-amd64-default-job-04] | | `-- Extracting mpdecimal-2.5.1: .......... done
[main-amd64-default-job-04] | | `-- Installing readline-8.1.2...
[main-amd64-default-job-04] | | `-- Extracting readline-8.1.2: .......... done
[main-amd64-default-job-04] | `-- Extracting python38-3.8.13_2: .......... done
[main-amd64-default-job-04] `-- Extracting py38-setuptools-62.1.0: .......... done
[main-amd64-default-job-04] `-- Installing suitesparse-umfpack-5.7.9...
[main-amd64-default-job-04] | `-- Installing metis-5.1.0_9...
[main-amd64-default-job-04] | `-- Extracting metis-5.1.0_9: .......... done
[main-amd64-default-job-04] | `-- Installing suitesparse-amd-2.4.6...
[main-amd64-default-job-04] | | `-- Installing suitesparse-config-5.12.0...
[main-amd64-default-job-04] | | `-- Extracting suitesparse-config-5.12.0: ......... done
[main-amd64-default-job-04] | `-- Extracting suitesparse-amd-2.4.6: .......... done
[main-amd64-default-job-04] | `-- Installing suitesparse-camd-2.4.6...
[main-amd64-default-job-04] | `-- Extracting suitesparse-camd-2.4.6: ......... done
[main-amd64-default-job-04] | `-- Installing suitesparse-ccolamd-2.9.6...
[main-amd64-default-job-04] | `-- Extracting suitesparse-ccolamd-2.9.6: ........ done
[main-amd64-default-job-04] | `-- Installing suitesparse-cholmod-3.0.14...
[main-amd64-default-job-04] | | `-- Installing suitesparse-colamd-2.9.6...
[main-amd64-default-job-04] | | `-- Extracting suitesparse-colamd-2.9.6: ........ done
[main-amd64-default-job-04] | `-- Extracting suitesparse-cholmod-3.0.14: .......... done
[main-amd64-default-job-04] `-- Extracting suitesparse-umfpack-5.7.9: .......... done
[main-amd64-default-job-04] Extracting py38-numpy-1.22.4,1: .......... done
=====
Message from gcc10-10.3.0:
--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc10
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
=====
Message from python38-3.8.13_2:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py38-gdbm databases/py-gdbm@py38
py38-sqlite3 databases/py-sqlite3@py38
py38-tkinter x11-toolkits/py-tkinter@py38
=====
Message from metis-5.1.0_9:
--
===> NOTICE:
The metis port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===> py38-fastcluster-1.2.6 depends on package: py38-numpy>=0,1 - found
===> Returning to build of py38-fastcluster-1.2.6
===> py38-fastcluster-1.2.6 depends on package: py38-setuptools>=62.1.0 - found
===> py38-fastcluster-1.2.6 depends on file: /usr/local/bin/python3.8 - found
===========================================================================
=======================<phase: lib-depends >============================
===========================================================================
=======================<phase: configure >============================
===> Configuring for py38-fastcluster-1.2.6
Fastcluster version: 1.2.6
Python version: 3.8.13 (default, May 17 2022, 01:35:49)
[Clang 14.0.3 (https://github.com/llvm/llvm-project.git llvmorg-14.0.3-0-g1f914
running config
===========================================================================
=======================<phase: build >============================
===> Building for py38-fastcluster-1.2.6
Fastcluster version: 1.2.6
Python version: 3.8.13 (default, May 17 2022, 01:35:49)
[Clang 14.0.3 (https://github.com/llvm/llvm-project.git llvmorg-14.0.3-0-g1f914
running build
running build_py
creating build
creating build/lib.freebsd-14.0-CURRENT-amd64-cpython-38
copying fastcluster.py -> build/lib.freebsd-14.0-CURRENT-amd64-cpython-38
running build_ext
building '_fastcluster' extension
creating build/temp.freebsd-14.0-CURRENT-amd64-cpython-38
creating build/temp.freebsd-14.0-CURRENT-amd64-cpython-38/src
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.8/site-packages/numpy/core/include -I/usr/local/include/python3.8 -c src/fastcluster_python.cpp -o build/temp.freebsd-14.0-CURRENT-amd64-cpython-38/src/fastcluster_python.o
In file included from src/fastcluster_python.cpp:62:
src/fastcluster.cpp:53:9: warning: Use fenv header. [-W#pragma-messages]
#pragma message("Use fenv header.")
^
Assertion failed: ((CGF.CurFuncDecl == nullptr || CGF.Builder.getIsFPConstrained() || isa<CXXConstructorDecl>(CGF.CurFuncDecl) || isa<CXXDestructorDecl>(CGF.CurFuncDecl) || (NewExceptionBehavior == llvm::fp::ebIgnore && NewRoundingBehavior == llvm::RoundingMode::NearestTiesToEven)) && "FPConstrained should be enabled on entire function"), function ConstructorHelper, file /usr/local/poudriere/jails/main-amd64/usr/src/contrib/llvm-project/clang/lib/CodeGen/CodeGenFunction.cpp, line 163.
PLEASE submit a bug report to https://bugs.freebsd.org/submit/ and include the crash backtrace, preprocessed source, and associated run script.
Stack dump:
0. Program arguments: /usr/bin/cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.8/site-packages/numpy/core/include -I/usr/local/include/python3.8 -c src/fastcluster_python.cpp -o build/temp.freebsd-14.0-CURRENT-amd64-cpython-38/src/fastcluster_python.o
1. <eof> parser at end of file
2. Per-file LLVM IR generation
3. /usr/include/c++/v1/__memory/temporary_buffer.h:27:1: Generating code for declaration 'std::get_temporary_buffer'
4. /usr/include/c++/v1/__memory/temporary_buffer.h:36:5: LLVM IR generation of compound statement ('{}')
#0 0x00000000050bb251 (/usr/bin/cc+0x50bb251)
#1 0x00000000050b9585 (/usr/bin/cc+0x50b9585)
#2 0x00000000050617ae (/usr/bin/cc+0x50617ae)
#3 0x0000000005061973 (/usr/bin/cc+0x5061973)
#4 0x0000000829e07a90 (/lib/libthr.so.3+0x19a90)
#5 0x0000000829e0704f (/lib/libthr.so.3+0x1904f)
#6 0x00007ffffffff8a3 ([vdso]+0x2d3)
#7 0x000000082c09960a __sys_thr_kill (/lib/libc.so.7+0x13d60a)
#8 0x000000082c012254 _raise (/lib/libc.so.7+0xb6254)
#9 0x000000082c0c3479 abort (/lib/libc.so.7+0x167479)
#10 0x000000082bff50c1 (/lib/libc.so.7+0x990c1)
#11 0x00000000029960fb (/usr/bin/cc+0x29960fb)
#12 0x0000000002973663 (/usr/bin/cc+0x2973663)
#13 0x000000000299f862 (/usr/bin/cc+0x299f862)
#14 0x00000000029aeda9 (/usr/bin/cc+0x29aeda9)
#15 0x00000000029ae551 (/usr/bin/cc+0x29ae551)
#16 0x00000000029ad8f4 (/usr/bin/cc+0x29ad8f4)
#17 0x00000000029afcab (/usr/bin/cc+0x29afcab)
#18 0x00000000029b999c (/usr/bin/cc+0x29b999c)
#19 0x000000000299dc1e (/usr/bin/cc+0x299dc1e)
#20 0x000000000299e7e2 (/usr/bin/cc+0x299e7e2)
#21 0x00000000024e50f0 (/usr/bin/cc+0x24e50f0)
#22 0x00000000024de63b (/usr/bin/cc+0x24de63b)
#23 0x00000000024d2673 (/usr/bin/cc+0x24d2673)
#24 0x00000000024d26a3 (/usr/bin/cc+0x24d26a3)
#25 0x00000000024d26a3 (/usr/bin/cc+0x24d26a3)
#26 0x00000000024d26a3 (/usr/bin/cc+0x24d26a3)
#27 0x00000000024d26a3 (/usr/bin/cc+0x24d26a3)
#28 0x00000000024d26a3 (/usr/bin/cc+0x24d26a3)
#29 0x00000000024d26a3 (/usr/bin/cc+0x24d26a3)
#30 0x00000000024d0c67 (/usr/bin/cc+0x24d0c67)
#31 0x0000000002fb1544 (/usr/bin/cc+0x2fb1544)
#32 0x0000000002fae996 (/usr/bin/cc+0x2fae996)
#33 0x00000000034e45f4 (/usr/bin/cc+0x34e45f4)
#34 0x0000000002eeb48f (/usr/bin/cc+0x2eeb48f)
#35 0x0000000002e7facf (/usr/bin/cc+0x2e7facf)
#36 0x0000000002fa8536 (/usr/bin/cc+0x2fa8536)
#37 0x000000000247a195 (/usr/bin/cc+0x247a195)
#38 0x00000000024876e5 (/usr/bin/cc+0x24876e5)
#39 0x0000000002d3bd47 (/usr/bin/cc+0x2d3bd47)
#40 0x00000000050616e4 (/usr/bin/cc+0x50616e4)
#41 0x0000000002d3b953 (/usr/bin/cc+0x2d3b953)
#42 0x0000000002d09d72 (/usr/bin/cc+0x2d09d72)
#43 0x0000000002d0a219 (/usr/bin/cc+0x2d0a219)
#44 0x0000000002d1ef3c (/usr/bin/cc+0x2d1ef3c)
cc: error: clang frontend command failed with exit code 134 (use -v to see invocation)
FreeBSD clang version 14.0.3 (https://github.com/llvm/llvm-project.git llvmorg-14.0.3-0-g1f9140064dfb)
Target: x86_64-unknown-freebsd14.0
Thread model: posix
InstalledDir: /usr/bin
cc: note: diagnostic msg:
********************
PLEASE ATTACH THE FOLLOWING FILES TO THE BUG REPORT:
Preprocessed source(s) and associated run script(s) are located at:
cc: note: diagnostic msg: /tmp/fastcluster_python-4c56d2.cpp
cc: note: diagnostic msg: /tmp/fastcluster_python-4c56d2.sh
cc: note: diagnostic msg:
********************
error: command '/usr/bin/cc' failed with exit code 134
*** Error code 1
Stop.
make: stopped in /usr/ports/math/py-fastcluster