[package - 123amd64-default][math/openturns] Failed for openturns-1.19_2 in configure
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Date: Sun, 10 Jul 2022 05:37:39 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: http://beefy6.nyi.freebsd.org/data/123amd64-default/2f8a7d1d15ce/logs/openturns-1.19_2.log
Build URL: http://beefy6.nyi.freebsd.org/build.html?mastername=123amd64-default&build=2f8a7d1d15ce
Log:
=>> Building math/openturns
build started at Sun Jul 10 05:35:53 UTC 2022
port directory: /usr/ports/math/openturns
package name: openturns-1.19_2
building for: FreeBSD 123amd64-default-job-07 12.3-RELEASE-p5 FreeBSD 12.3-RELEASE-p5 amd64
maintained by: yuri@FreeBSD.org
Makefile ident:
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---Begin OPTIONS List---
===> The following configuration options are available for openturns-1.19_2:
EXAMPLES=on: Build and/or install examples
PYTHON=on: Python bindings or support
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
PKG_CONFIG=pkgconf PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/math/openturns/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/openturns/work XDG_CACHE_HOME=/wrkdirs/usr/ports/math/openturns/work/.cache HOME=/wrkdirs/usr/ports/math/openturns/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/openturns/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/math/openturns/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8
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--MAKE_ENV--
NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/math/openturns/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/openturns/work XDG_CACHE_HOME=/wrkdirs/usr/ports/math/openturns/work/.cache HOME=/wrkdirs/usr/ports/math/openturns/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/openturns/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/math/openturns/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/libdata/pkgconfig NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/math/openturns/work/stage LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 PREFIX=/usr/local LOCALBASE=/usr/local CC="clang12" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="clang-cpp12" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -L/usr/local/lib -fstack-protector-strong -L/usr/local/lib " LIBS="" CXX="clang++12" CXXFLAGS="-O2 -pipe -fstack-prot
ector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
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--End PLIST_SUB--
--SUB_LIST--
EXAMPLES="" NO_EXAMPLES="@comment " PYTHON="" NO_PYTHON="@comment " PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/openturns DOCSDIR=/usr/local/share/doc/openturns EXAMPLESDIR=/usr/local/share/examples/openturns WWWDIR=/usr/local/www/openturns ETCDIR=/usr/local/etc/openturns
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=======================<phase: check-sanity >============================
===> License LGPL3 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> openturns-1.19_2 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.18.3.pkg
[123amd64-default-job-07] Installing pkg-1.18.3...
[123amd64-default-job-07] Extracting pkg-1.18.3: .......... done
===> openturns-1.19_2 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of openturns-1.19_2
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License LGPL3 accepted by the user
===> Fetching all distfiles required by openturns-1.19_2 for building
===========================================================================
=======================<phase: checksum >============================
===> License LGPL3 accepted by the user
===> Fetching all distfiles required by openturns-1.19_2 for building
=> SHA256 Checksum OK for openturns-openturns-v1.19_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License LGPL3 accepted by the user
===> Fetching all distfiles required by openturns-1.19_2 for building
===> Extracting for openturns-1.19_2
=> SHA256 Checksum OK for openturns-openturns-v1.19_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for openturns-1.19_2
===========================================================================
=======================<phase: build-depends >============================
===> openturns-1.19_2 depends on package: boost-libs>0 - not found
===> Installing existing package /packages/All/boost-libs-1.79.0_1.pkg
[123amd64-default-job-07] Installing boost-libs-1.79.0_1...
[123amd64-default-job-07] `-- Installing icu-71.1,1...
[123amd64-default-job-07] `-- Extracting icu-71.1,1: .......... done
[123amd64-default-job-07] Extracting boost-libs-1.79.0_1: .......... done
=====
Message from boost-libs-1.79.0_1:
--
You have built the Boost library with thread support.
Don't forget to add -pthread to your linker options when
linking your code.
===> openturns-1.19_2 depends on package: boost-libs>0 - found
===> Returning to build of openturns-1.19_2
<snip>
[123amd64-default-job-07] Extracting hdf5-1.10.9,1: .......... done
===> openturns-1.19_2 depends on shared library: libhdf5_cpp.so - found (/usr/local/lib/libhdf5_cpp.so)
===> Returning to build of openturns-1.19_2
===> openturns-1.19_2 depends on shared library: libipopt.so - found (/usr/local/lib/libipopt.so)
===> openturns-1.19_2 depends on shared library: liblapack.so - found (/usr/local/lib/liblapack.so)
===> openturns-1.19_2 depends on shared library: libmetis.so - found (/usr/local/lib/libmetis.so)
===> openturns-1.19_2 depends on shared library: libmpc.so - found (/usr/local/lib/libmpc.so)
===> openturns-1.19_2 depends on shared library: libmpfr.so - found (/usr/local/lib/libmpfr.so)
===> openturns-1.19_2 depends on shared library: libnauty.so - found (/usr/local/lib/libnauty.so)
===> openturns-1.19_2 depends on shared library: libnlopt.so - not found
===> Installing existing package /packages/All/nlopt-2.7.1.pkg
[123amd64-default-job-07] Installing nlopt-2.7.1...
[123amd64-default-job-07] `-- Installing guile2-2.2.7_2...
[123amd64-default-job-07] | `-- Installing boehm-gc-threaded-8.0.6...
[123amd64-default-job-07] | | `-- Installing boehm-gc-8.0.6...
[123amd64-default-job-07] | | `-- Extracting boehm-gc-8.0.6: .......... done
[123amd64-default-job-07] | `-- Extracting boehm-gc-threaded-8.0.6: .......... done
[123amd64-default-job-07] | `-- Installing libltdl-2.4.7...
[123amd64-default-job-07] | `-- Extracting libltdl-2.4.7: .......... done
[123amd64-default-job-07] `-- Extracting guile2-2.2.7_2: .......... done
[123amd64-default-job-07] Extracting nlopt-2.7.1: .......... done
===> openturns-1.19_2 depends on shared library: libnlopt.so - found (/usr/local/lib/libnlopt.so)
===> Returning to build of openturns-1.19_2
===> openturns-1.19_2 depends on shared library: libOsi.so - found (/usr/local/lib/libOsi.so)
===> openturns-1.19_2 depends on shared library: libpagmo.so - not found
===> Installing existing package /packages/All/pagmo2-2.18.0_5.pkg
[123amd64-default-job-07] Installing pagmo2-2.18.0_5...
[123amd64-default-job-07] `-- Installing onetbb-2021.5.0...
[123amd64-default-job-07] | `-- Installing hwloc2-2.7.0_2...
[123amd64-default-job-07] | | `-- Installing level-zero-1.8.1...
[123amd64-default-job-07] | | `-- Extracting level-zero-1.8.1: .......... done
[123amd64-default-job-07] | | `-- Installing libpciaccess-0.16...
[123amd64-default-job-07] | | `-- Installing pciids-20220518...
[123amd64-default-job-07] | | `-- Extracting pciids-20220518: ..... done
[123amd64-default-job-07] | | `-- Extracting libpciaccess-0.16: ......... done
[123amd64-default-job-07] | `-- Extracting hwloc2-2.7.0_2: .......... done
[123amd64-default-job-07] `-- Extracting onetbb-2021.5.0: .......... done
[123amd64-default-job-07] Extracting pagmo2-2.18.0_5: .......... done
===> openturns-1.19_2 depends on shared library: libpagmo.so - found (/usr/local/lib/libpagmo.so)
===> Returning to build of openturns-1.19_2
===> openturns-1.19_2 depends on shared library: libpng16.so - found (/usr/local/lib/libpng16.so)
===> openturns-1.19_2 depends on shared library: libprimesieve.so - not found
===> Installing existing package /packages/All/primesieve-8.0.pkg
[123amd64-default-job-07] Installing primesieve-8.0...
[123amd64-default-job-07] Extracting primesieve-8.0: .......... done
===> openturns-1.19_2 depends on shared library: libprimesieve.so - found (/usr/local/lib/libprimesieve.so)
===> Returning to build of openturns-1.19_2
===> openturns-1.19_2 depends on shared library: libspqr.so - found (/usr/local/lib/libspqr.so)
===> openturns-1.19_2 depends on shared library: libsuitesparseconfig.so - found (/usr/local/lib/libsuitesparseconfig.so)
===> openturns-1.19_2 depends on shared library: libsz.so - found (/usr/local/lib/libsz.so)
===> openturns-1.19_2 depends on shared library: libtbb.so - found (/usr/local/lib/libtbb.so)
===> openturns-1.19_2 depends on shared library: libunwind.so - found (/usr/local/lib/libunwind.so)
===> openturns-1.19_2 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so)
===> openturns-1.19_2 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so)
===> openturns-1.19_2 depends on shared library: libjpeg.so - found (/usr/local/lib/libjpeg.so)
===> openturns-1.19_2 depends on shared library: libsqlite3.so - found (/usr/local/lib/libsqlite3.so)
===========================================================================
=======================<phase: configure >============================
===> Configuring for openturns-1.19_2
===> Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/math/openturns/work/.build
-- The C compiler identification is Clang 12.0.1
-- The CXX compiler identification is Clang 12.0.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/local/bin/clang12 - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/local/bin/clang++12 - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found Spectra: /usr/local/share/spectra/cmake (found suitable version "1.0.1")
-- Found primesieve: /usr/local/lib/cmake/primesieve (found version 8.0)
-- Found BISON: /usr/local/bin/bison (found suitable version "3.8.2", minimum required is "2.4")
-- Found FLEX: /usr/bin/flex (found version "2.5.37")
-- Found TBB: /usr/local/lib/cmake/TBB (found version 2021.5.0)
-- Found LibXml2: /usr/local/lib/libxml2.so (found version "2.9.13")
-- Found HDF5: /usr/local/lib/libhdf5.so;/usr/local/lib/libsz.so;/usr/lib/libz.so;/usr/lib/libdl.so;/usr/lib/libm.so;/usr/local/lib/libhdf5_cpp.so;/usr/local/lib/libhdf5.so;/usr/local/lib/libsz.so;/usr/lib/libz.so;/usr/lib/libdl.so;/usr/lib/libm.so (found version "1.10.9") found components: C CXX
-- Found Threads: TRUE
-- Found Boost: /usr/local/include (found suitable version "1.79.0", minimum required is "1.46")
-- Found MPFR: /usr/local/lib/libmpfr.so
-- Found MPC: /usr/local/lib/libmpc.so
-- Found NLopt: /usr/local/lib/cmake/nlopt (found version "2.7.1")
-- Found dlib: /usr/local/lib/cmake/dlib (found version 19.22.0)
CMake Error at /usr/local/lib/cmake/Ceres/CeresConfig.cmake:89 (message):
Failed to find Ceres - Found Eigen dependency, but the version of Eigen
found (3.4.0) does not exactly match the version of Eigen Ceres was
compiled with (3.3.9). This can cause subtle bugs by triggering violations
of the One Definition Rule. See the Wikipedia article
http://en.wikipedia.org/wiki/One_Definition_Rule for more details
Call Stack (most recent call first):
/usr/local/lib/cmake/Ceres/CeresConfig.cmake:200 (ceres_report_not_found)
CMakeLists.txt:362 (find_package)
CMake Warning at CMakeLists.txt:362 (find_package):
Found package configuration file:
/usr/local/lib/cmake/Ceres/CeresConfig.cmake
but it set Ceres_FOUND to FALSE so package "Ceres" is considered to be NOT
FOUND.
-- Found PkgConfig: /usr/local/bin/pkgconf (found version "1.8.0")
-- Checking for module 'cminpack'
-- Found cminpack, version 1.3.6
-- CMinPack found (include: /usr/local/include/cminpack-1, libs: optimized;/usr/local/lib/libcminpack.so;debug;/usr/local/lib/libcminpack.so;cminpack;m)
-- Found Bonmin: /usr/local/lib/libbonmin.so
-- Found Ipopt: /usr/local/lib/libipopt.so (found version "3.14.4")
-- Required Boost libraries: serialization
-- Found Boost: /usr/local/include (found suitable version "1.79.0", minimum required is "1.60.0") found components: serialization
-- Detected Boost version: 1.79.0
-- Boost include dirs: /usr/local/include
-- Requested IPOPT components: header
-- Found pagmo_IPOPT: /usr/local/include/coin-or
-- Creating the 'pagmo::IPOPT::header' imported target.
-- Path to the ipopt headers: /usr/local/include/coin-or
-- Found Pagmo: /usr/local/lib/cmake/pagmo (found version "2.18.0")
-- Found OpenMP_C: -fopenmp=libomp (found version "5.0")
-- Found OpenMP_CXX: -fopenmp=libomp (found version "5.0")
-- Found OpenMP: TRUE (found version "5.0")
-- French locale not found
-- std::regex found
-- Looking for dirent.h
-- Looking for dirent.h - found
-- Looking for dlfcn.h
-- Looking for dlfcn.h - found
-- Looking for libgen.h
-- Looking for libgen.h - found
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for stdlib.h
-- Looking for stdlib.h - found
-- Looking for sys/stat.h
-- Looking for sys/stat.h - found
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for unistd.h
-- Looking for unistd.h - found
-- Looking for xlocale.h
-- Looking for xlocale.h - found
-- Looking for uselocale
-- Looking for uselocale - found
-- Looking for dladdr
-- Looking for dladdr - found
-- Looking for openblas_set_num_threads
-- Looking for openblas_set_num_threads - found
-- Looking for goto_get_num_procs
-- Looking for goto_get_num_procs - found
-- Found SWIG: /usr/local/bin/swig (found suitable version "4.0.2", minimum required is "3")
-- Performing Test UNDEFINED_SYMBOLS_ALLOWED - Success
-- Found PythonInterp: /usr/local/bin/python3.9 (found suitable version "3.9.13", minimum required is "3.5")
-- Found PythonLibs: /usr/local/lib/libpython3.9.so (found suitable exact version "3.9.13")
-- Found numpy: /usr/local/lib/python3.9/site-packages/numpy (found version "1.23.0")
-- Found scipy: /usr/local/lib/python3.9/site-packages/scipy (found version "1.8.1")
-- Found pandas: /usr/local/lib/python3.9/site-packages/pandas (found version "1.3.5")
-- Found matplotlib: /usr/local/lib/python3.9/site-packages/matplotlib (found suitable version "3.4.3", minimum required is "1.3.1")
-- Found chaospy: /usr/local/lib/python3.9/site-packages/chaospy (found version "0.1.0")
-- Found dill: /usr/local/lib/python3.9/site-packages/dill (found version "0.3.4")
-- The following OPTIONAL packages have been found:
* Spectra (required version >= 1.0)
* primesieve
* BISON (required version >= 2.4)
* FLEX
* TBB
* LibXml2
* HDF5
* MPFR
* MPC
* dlib
* Bonmin
* Ipopt
* Pagmo
* OpenMP
* SWIG (required version >= 3)
* PythonInterp (required version >= 3.5)
* PythonLibs (required version == 3.9.13)
-- The following REQUIRED packages have been found:
* Threads
* Boost (required version >= 1.60.0)
* Eigen3 (required version >= 3.3)
* NLopt (required version >= 2.6)
* pagmo_IPOPT
-- The following OPTIONAL packages have not been found:
* Ceres
-- Configuring incomplete, errors occurred!
See also "/wrkdirs/usr/ports/math/openturns/work/.build/CMakeFiles/CMakeOutput.log".
*** Error code 1
Stop.
make: stopped in /usr/ports/math/openturns