[package - main-i386-default][science/trilinos] Failed for trilinos-13.4.0 in configure
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Date: Sun, 10 Jul 2022 01:41:12 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: http://beefy17.nyi.freebsd.org/data/main-i386-default/p2f8a7d1d15ce_s2b766d5e5a/logs/trilinos-13.4.0.log
Build URL: http://beefy17.nyi.freebsd.org/build.html?mastername=main-i386-default&build=p2f8a7d1d15ce_s2b766d5e5a
Log:
=>> Building science/trilinos
build started at Sun Jul 10 01:40:08 UTC 2022
port directory: /usr/ports/science/trilinos
package name: trilinos-13.4.0
building for: FreeBSD main-i386-default-job-08 14.0-CURRENT FreeBSD 14.0-CURRENT 1400063 i386
maintained by: yuri@FreeBSD.org
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=======================<phase: check-sanity >============================
===> License BSD3CLAUSE LGPL20 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> trilinos-13.4.0 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.18.3.pkg
[main-i386-default-job-08] Installing pkg-1.18.3...
[main-i386-default-job-08] Extracting pkg-1.18.3: .......... done
===> trilinos-13.4.0 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of trilinos-13.4.0
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License BSD3CLAUSE LGPL20 accepted by the user
=> trilinos-Trilinos-trilinos-release-13-4-0_GH0.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch https://codeload.github.com/trilinos/Trilinos/tar.gz/trilinos-release-13-4-0?dummy=/trilinos-Trilinos-trilinos-release-13-4-0_GH0.tar.gz
fetch: https://codeload.github.com/trilinos/Trilinos/tar.gz/trilinos-release-13-4-0?dummy=/trilinos-Trilinos-trilinos-release-13-4-0_GH0.tar.gz: size unknown
fetch: https://codeload.github.com/trilinos/Trilinos/tar.gz/trilinos-release-13-4-0?dummy=/trilinos-Trilinos-trilinos-release-13-4-0_GH0.tar.gz: size of remote file is not known
trilinos-Trilinos-trilinos-release-13-4-0_GH0.tar.gz 160 MB 5702 kBps 29s
===> Fetching all distfiles required by trilinos-13.4.0 for building
===========================================================================
=======================<phase: checksum >============================
===> License BSD3CLAUSE LGPL20 accepted by the user
===> Fetching all distfiles required by trilinos-13.4.0 for building
=> SHA256 Checksum OK for trilinos-Trilinos-trilinos-release-13-4-0_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License BSD3CLAUSE LGPL20 accepted by the user
===> Fetching all distfiles required by trilinos-13.4.0 for building
===> Extracting for trilinos-13.4.0
=> SHA256 Checksum OK for trilinos-Trilinos-trilinos-release-13-4-0_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for trilinos-13.4.0
===========================================================================
=======================<phase: build-depends >============================
===> trilinos-13.4.0 depends on executable: bash - not found
===> Installing existing package /packages/All/bash-5.1.16.pkg
[main-i386-default-job-08] Installing bash-5.1.16...
[main-i386-default-job-08] `-- Installing gettext-runtime-0.21...
[main-i386-default-job-08] | `-- Installing indexinfo-0.3.1...
[main-i386-default-job-08] | `-- Extracting indexinfo-0.3.1: .... done
[main-i386-default-job-08] `-- Extracting gettext-runtime-0.21: .......... done
[main-i386-default-job-08] `-- Installing readline-8.1.2...
[main-i386-default-job-08] `-- Extracting readline-8.1.2: .......... done
[main-i386-default-job-08] Extracting bash-5.1.16: .......... done
<snip>
-- NOT setting TrilinosCouplings_ENABLE_SEACASNemesis=ON since SEACASNemesis is NOT enabled at this point!
-- Setting TrilinosCouplings_ENABLE_Sacado=ON since Trilinos_ENABLE_TrilinosCouplings=ON AND Trilinos_ENABLE_Sacado=ON
-- NOT setting TrilinosCouplings_ENABLE_STKIO=ON since STKIO is NOT enabled at this point!
-- NOT setting TrilinosCouplings_ENABLE_STKMesh=ON since STKMesh is NOT enabled at this point!
-- NOTE: TrilinosCouplings_ENABLE_Stokhos=ON is already set!
-- Setting TrilinosCouplings_ENABLE_Stratimikos=ON since Trilinos_ENABLE_TrilinosCouplings=ON AND Trilinos_ENABLE_Stratimikos=ON
-- Setting TrilinosCouplings_ENABLE_Teko=ON since Trilinos_ENABLE_TrilinosCouplings=ON AND Trilinos_ENABLE_Teko=ON
-- Setting TrilinosCouplings_ENABLE_TeuchosKokkosComm=ON since Trilinos_ENABLE_TrilinosCouplings=ON AND Trilinos_ENABLE_TeuchosKokkosComm=ON
-- Setting TrilinosCouplings_ENABLE_TeuchosKokkosCompat=ON since Trilinos_ENABLE_TrilinosCouplings=ON AND Trilinos_ENABLE_TeuchosKokkosCompat=ON
-- Setting TrilinosCouplings_ENABLE_Tpetra=ON since Trilinos_ENABLE_TrilinosCouplings=ON AND Trilinos_ENABLE_Tpetra=ON
-- NOT setting TrilinosCouplings_ENABLE_TriKota=ON since TriKota is NOT enabled at this point!
-- NOTE: TrilinosCouplings_ENABLE_Zoltan=ON is already set!
Enabling all remaining required TPLs for current set of enabled packages ...
-- Setting TPL_ENABLE_BLAS=ON because it is required by the enabled package TeuchosNumerics
-- Setting TPL_ENABLE_LAPACK=ON because it is required by the enabled package TeuchosNumerics
-- Setting TPL_ENABLE_Boost=ON because it is required by the enabled package MiniTensor
Enabling all optional package TPL support <TRIBITS_PACKAGE>_ENABLE_<DEPTPL> not currently disabled for enabled TPLs ...
-- Setting KokkosCore_ENABLE_DLlib=ON since TPL_ENABLE_DLlib=ON
-- Setting TeuchosCore_ENABLE_Boost=ON since TPL_ENABLE_Boost=ON
-- Setting KokkosKernels_ENABLE_BLAS=ON since TPL_ENABLE_BLAS=ON
-- Setting KokkosKernels_ENABLE_LAPACK=ON since TPL_ENABLE_LAPACK=ON
-- Setting Pamgen_ENABLE_Boost=ON since TPL_ENABLE_Boost=ON
-- Setting Ifpack_ENABLE_Boost=ON since TPL_ENABLE_Boost=ON
-- Setting ShyLU_NodeHTS_ENABLE_BLAS=ON since TPL_ENABLE_BLAS=ON
-- Setting ShyLU_NodeTacho_ENABLE_LAPACK=ON since TPL_ENABLE_LAPACK=ON
-- Setting ShyLU_NodeTacho_ENABLE_BLAS=ON since TPL_ENABLE_BLAS=ON
-- NOTE: ShyLU_NodeTacho_ENABLE_LAPACK=ON is already set!
-- NOTE: ShyLU_NodeTacho_ENABLE_BLAS=ON is already set!
-- Setting FEI_ENABLE_Boost=ON since TPL_ENABLE_Boost=ON
-- Setting STKUtil_ENABLE_Boost=ON since TPL_ENABLE_Boost=ON
-- Setting NOX_ENABLE_LAPACK=ON since TPL_ENABLE_LAPACK=ON
-- Setting NOX_ENABLE_BLAS=ON since TPL_ENABLE_BLAS=ON
-- Setting MueLu_ENABLE_Boost=ON since TPL_ENABLE_Boost=ON
-- Setting Rythmos_ENABLE_Boost=ON since TPL_ENABLE_Boost=ON
-- Setting Stokhos_ENABLE_Boost=ON since TPL_ENABLE_Boost=ON
-- Setting ROL_ENABLE_Boost=ON since TPL_ENABLE_Boost=ON
Enabling TPLs based on <TRIBITS_PACKAGE>_ENABLE_<TPL>=ON if TPL is not explicitly disabled ...
Set cache entries for optional packages/TPLs and tests/examples for packages actually enabled ...
Enabling the shell of non-enabled parent packages (mostly for show) that have at least one subpackage enabled ...
-- Setting Trilinos_ENABLE_ShyLU_DD=ON because Trilinos_ENABLE_ShyLU_DDCommon=ON
Final set of enabled packages: TrilinosFrameworkTests TrilinosATDMConfigTests Gtest Kokkos Teuchos KokkosKernels RTOp Sacado MiniTensor Epetra Zoltan Shards Triutils EpetraExt Tpetra TrilinosSS Domi Thyra Xpetra Isorropia Pliris AztecOO Galeri Amesos Pamgen Zoltan2Core Ifpack ML Belos ShyLU_Node Amesos2 Komplex Anasazi Ifpack2 Stratimikos FEI Teko Intrepid Intrepid2 Compadre STK Phalanx NOX Moertel MueLu Zoltan2Sphynx Zoltan2 ShyLU_DD Rythmos Tempus Stokhos ROL Piro Panzer PyTrilinos Adelus TrilinosCouplings Pike TrilinosBuildStats 59
Final set of enabled SE packages: TrilinosFrameworkTests TrilinosATDMConfigTests Gtest KokkosCore KokkosContainers KokkosAlgorithms Kokkos TeuchosCore TeuchosParser TeuchosParameterList TeuchosComm TeuchosNumerics TeuchosRemainder TeuchosKokkosCompat TeuchosKokkosComm Teuchos KokkosKernels RTOp Sacado MiniTensor Epetra Zoltan Shards Triutils EpetraExt TpetraClassic TpetraTSQR TpetraCore Tpetra TrilinosSS Domi ThyraCore ThyraEpetraAdapters ThyraEpetraExtAdapters ThyraTpetraAdapters Thyra Xpetra Isorropia Pliris AztecOO Galeri Amesos Pamgen Zoltan2Core Ifpack ML Belos ShyLU_NodeHTS ShyLU_NodeTacho ShyLU_Node Amesos2 Komplex Anasazi Ifpack2 Stratimikos FEI Teko Intrepid Intrepid2 Compadre STKUtil STKEmend STKMath STKSimd STKNGP_TEST STKTopology STKUnit_test_utils STKUnit_tests STKDoc_tests STKExprEval STK Phalanx NOX Moertel MueLu Zoltan2Sphynx Zoltan2 ShyLU_DDCommon ShyLU_DD Rythmos Tempus Stokhos ROL Piro PanzerCore Panzer PyTrilinos Adelus TrilinosCouplings Pike TrilinosBuildStats 9
1
Final set of non-enabled packages: SEACAS TriKota Percept Krino ShyLU NewPackage 6
Final set of non-enabled SE packages: ShyLU_NodeBasker ShyLU_NodeFastILU SEACASExodus SEACASExodus_for SEACASExoIIv2for32 SEACASNemesis SEACASIoss SEACASChaco SEACASAprepro_lib SEACASSupes SEACASSuplib SEACASSuplibC SEACASSuplibCpp SEACASSVDI SEACASPLT SEACASAlgebra SEACASAprepro SEACASBlot SEACASConjoin SEACASEjoin SEACASEpu SEACASCpup SEACASExo2mat SEACASExodiff SEACASExomatlab SEACASExotxt SEACASExo_format SEACASEx1ex2v2 SEACASExotec2 SEACASFastq SEACASGjoin SEACASGen3D SEACASGenshell SEACASGrepos SEACASExplore SEACASMapvarlib SEACASMapvar SEACASMapvar-kd SEACASMat2exo SEACASNas2exo SEACASZellij SEACASNemslice SEACASNemspread SEACASNumbers SEACASSlice SEACASTxtexo SEACASEx2ex1v2 SEACAS TriKota STKCoupling STKMesh STKIO STKSearch STKTransfer STKTools STKBalance STKSearchUtil Percept Krino ShyLU_DDBDDC ShyLU_DDFROSch ShyLU_DDCore ShyLU PanzerDofMgr PanzerDiscFE PanzerAdaptersSTK PanzerMiniEM PanzerExprEval NewPackage PikeBlackBox PikeImplicit 71
Final set of enabled TPLs: BLAS LAPACK Boost DLlib 4
Final set of non-enabled TPLs: MKL yaml-cpp Peano CUDA CUBLAS CUSOLVER CUSPARSE Thrust Cusp TBB Pthread HWLOC QTHREAD BinUtils ARPREC QD MPI Scotch OVIS gpcd METIS MTMETIS ParMETIS PuLP TopoManager LibTopoMap PaToH CppUnit ADOLC ADIC TVMET MF ExodusII Nemesis XDMF Zlib HDF5 CGNS Pnetcdf Netcdf ADIOS2 y12m SuperLUDist SuperLUMT SuperLU Cholmod UMFPACK MA28 AMD CSparse HYPRE PETSC BLACS SCALAPACK MUMPS STRUMPACK PARDISO_MKL PARDISO Oski TAUCS ForUQTK Dakota HIPS MATLAB CASK SPARSKIT QT gtest BoostLib BoostAlbLib OpenNURBS Portals CrayPortals Gemini InfiniBand BGPDCMF BGQPAMI Pablo HPCToolkit Clp GLPK qpOASES Matio PAPI MATLABLib Eigen X11 Lemon GLM quadmath CAMAL RTlib AmgX CGAL CGALCore VTune TASMANIAN ArrayFireCPU SimMesh SimModel SimParasolid SimAcis SimField Valgrind QUO ViennaCL Avatar mlpack pebbl MAGMASparse Check SARMA 112
Setting up export dependencies for all enabled SE packages ...
Probing the environment ...
-- USE_XSDK_DEFAULTS='FALSE'
-- BUILD_SHARED_LIBS='ON'
-- CMAKE_BUILD_TYPE='Release'
-- The C compiler identification is Clang 14.0.5
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- CMAKE_C_COMPILER_ID='Clang'
-- CMAKE_C_COMPILER_VERSION='14.0.5'
-- The CXX compiler identification is Clang 14.0.5
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- CMAKE_CXX_COMPILER_ID='Clang'
-- CMAKE_CXX_COMPILER_VERSION='14.0.5'
-- The Fortran compiler identification is GNU 11.3.0
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Check for working Fortran compiler: /usr/local/bin/gfortran11 - skipped
-- Skip adding flags for OpenMP because Kokkos flags does that ...
-- Trilinos_SET_INSTALL_RPATH='TRUE'
-- CMAKE_INSTALL_RPATH_USE_LINK_PATH='YES'
-- Setting default for CMAKE_INSTALL_RPATH pointing to Trilinos_INSTALL_LIB_DIR
-- CMAKE_INSTALL_RPATH='/usr/local/lib'
-- Looking for C++ include sys/time.h
-- Looking for C++ include sys/time.h - found
-- Looking for C++ include time.h
-- Looking for C++ include time.h - found
-- Looking for C++ include stdint.h
-- Looking for C++ include stdint.h - found
-- Looking for C++ include inttypes.h
-- Looking for C++ include inttypes.h - found
-- Found Perl: /usr/local/bin/perl (found version "5.32.1")
-- Warning, cannot automatically determine Fortran mangling.
-- Detecting Fortran/C Interface
-- Detecting Fortran/C Interface - Found GLOBAL and MODULE mangling
-- Verifying Fortran/CXX Compiler Compatibility
-- Verifying Fortran/CXX Compiler Compatibility - Success
-- Performing Test MATH_LIBRARY_IS_SUPPLIED
-- Performing Test MATH_LIBRARY_IS_SUPPLIED - Success
-- Performing Test FINITE_VALUE_HAVE_GLOBAL_ISNAN
-- Performing Test FINITE_VALUE_HAVE_GLOBAL_ISNAN - Success
-- Performing Test FINITE_VALUE_HAVE_STD_ISNAN
-- Performing Test FINITE_VALUE_HAVE_STD_ISNAN - Success
-- Performing Test FINITE_VALUE_HAVE_GLOBAL_ISINF
-- Performing Test FINITE_VALUE_HAVE_GLOBAL_ISINF - Success
-- Performing Test FINITE_VALUE_HAVE_STD_ISINF
-- Performing Test FINITE_VALUE_HAVE_STD_ISINF - Success
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
Getting information for all enabled TPLs ...
Processing enabled TPL: BLAS (enabled by TeuchosNumerics, disable with -DTPL_ENABLE_BLAS=OFF)
-- BLAS_LIBRARY_NAMES='blas blas_win32'
-- Searching for libs in BLAS_LIBRARY_DIRS=''
-- Searching for a lib in the set "blas blas_win32":
-- Searching for lib 'blas' ...
-- Found lib '/usr/local/lib/libblas.so'
-- TPL_BLAS_LIBRARIES='/usr/local/lib/libblas.so'
Processing enabled TPL: LAPACK (enabled by TeuchosNumerics, disable with -DTPL_ENABLE_LAPACK=OFF)
-- LAPACK_LIBRARY_NAMES='lapack lapack_win32'
-- Searching for libs in LAPACK_LIBRARY_DIRS=''
-- Searching for a lib in the set "lapack lapack_win32":
-- Searching for lib 'lapack' ...
-- Found lib '/usr/local/lib/liblapack.so'
-- TPL_LAPACK_LIBRARIES='/usr/local/lib/liblapack.so'
Processing enabled TPL: Boost (enabled by MiniTensor, disable with -DTPL_ENABLE_Boost=OFF)
-- Searching for headers in Boost_INCLUDE_DIRS=''
-- Searching for a header file in the set "boost/version.hpp":
-- Searching for header 'boost/version.hpp' ...
-- Found header '/usr/local/include/boost/version.hpp'
-- Searching for a header file in the set "boost/mpl/at.hpp":
-- Searching for header 'boost/mpl/at.hpp' ...
-- Found header '/usr/local/include/boost/mpl/at.hpp'
-- Found TPL 'Boost' include dirs '/usr/local/include'
-- TPL_Boost_INCLUDE_DIRS='/usr/local/include'
Processing enabled TPL: DLlib (enabled explicitly, disable with -DTPL_ENABLE_DLlib=OFF)
-- Attempting to tentatively enable TPL 'DLlib' ...
-- DLlib_LIBRARY_NAMES='dl'
-- Searching for libs in DLlib_LIBRARY_DIRS=''
-- Searching for a lib in the set "dl":
-- Searching for lib 'dl' ...
-- Found lib '/usr/lib/libdl.so'
-- TPL_DLlib_LIBRARIES='/usr/lib/libdl.so'
-- Attempt to tentatively enable TPL 'DLlib' passed!
Setting up testing support ...
-- CTEST_DROP_METHOD='http'
-- CTEST_DROP_SITE='testing.sandia.gov'
-- CTEST_PROJECT_NAME='Trilinos'
-- CTEST_DROP_LOCATION='/cdash/submit.php?project=Trilinos'
-- CTEST_TRIGGER_SITE=''
-- CTEST_DROP_SITE_CDASH='TRUE'
-- TRIBITS_2ND_CTEST_DROP_SITE='testing-dev.sandia.gov'
-- TRIBITS_2ND_CTEST_DROP_LOCATION='/cdash/submit.php?project=Trilinos'
Configuring individual enabled Trilinos packages ...
-- NOTE: Can't fill in version date files for Trilinos since /wrkdirs/usr/ports/science/trilinos/work/Trilinos-trilinos-release-13-4-0/.git/ does not exist!
Processing enabled package: TrilinosFrameworkTests (Libs)
-- TrilinosFrameworkTests_ProjectCiFileChangeLogic_UnitTests: NOT added test because TrilinosFrameworkTests_ENABLE_TESTS=''.
-- TrilinosFrameworkTests_get-changed-trilinos-packages-helpers-unit-tests: NOT added test because TrilinosFrameworkTests_ENABLE_TESTS=''.
-- TrilinosFrameworkTests_clean_all_jobs_UnitTests: NOT added test because TrilinosFrameworkTests_ENABLE_TESTS=''.
-- TrilinosFrameworkTests_clean_sentinel_UnitTests: NOT added test because TrilinosFrameworkTests_ENABLE_TESTS=''.
-- TrilinosFrameworkTests_clean_workspace_UnitTests: NOT added test because TrilinosFrameworkTests_ENABLE_TESTS=''.
-- TrilinosFrameworkTests_PullRequestLinuxDriver_old_UnitTests: NOT added test because TrilinosFrameworkTests_ENABLE_TESTS=''.
-- TrilinosFrameworkTests_PullRequestLinuxDriver_UnitTests: NOT added test because TrilinosFrameworkTests_ENABLE_TESTS=''.
-- TrilinosFrameworkTests_get_changed_trilinos_packages_test_ProjectsList_TeuchosCore: NOT added test because TrilinosFrameworkTests_ENABLE_TESTS=''.
-- TrilinosFrameworkTests_get_changed_trilinos_packages_test_cmake_std_atdm_TeuchosCore_PyTrilinos_Pliris: NOT added test because TrilinosFrameworkTests_ENABLE_TESTS=''.
-- TrilinosFrameworkTests_get_changed_trilinos_packages_test_TeuchosCore_TriKota_NewPackage_Pliris: NOT added test because TrilinosFrameworkTests_ENABLE_TESTS=''.
-- TrilinosFrameworkTests_get_changed_trilinos_packages_test_cmake_std_atdm: NOT added test because TrilinosFrameworkTests_ENABLE_TESTS=''.
-- TrilinosFrameworkTests_get_changed_trilinos_packages_test_ShyLU_NodeHTS: NOT added test because TrilinosFrameworkTests_ENABLE_TESTS=''.
Processing enabled package: TrilinosATDMConfigTests (Libs)
Processing enabled package: Gtest (Libs)
Processing enabled package: Kokkos (Core, Containers, Algorithms)
-- Setting default Kokkos CXX standard to 14
CMake Error at packages/kokkos/CMakeLists.txt:133 (MESSAGE):
Kokkos assumes a 64-bit build; i.e., 8-byte pointers, but found 4-byte
pointers instead
-- Configuring incomplete, errors occurred!
See also "/wrkdirs/usr/ports/science/trilinos/work/.build/CMakeFiles/CMakeOutput.log".
*** Error code 1
Stop.
make: stopped in /usr/ports/science/trilinos