[package - 123i386-default][science/cp2k] Failed for cp2k-9.1.0 in configure
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Date: Sat, 02 Jul 2022 22:09:24 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: http://beefy5.nyi.freebsd.org/data/123i386-default/b2bfaa3cf348/logs/cp2k-9.1.0.log
Build URL: http://beefy5.nyi.freebsd.org/build.html?mastername=123i386-default&build=b2bfaa3cf348
Log:
=>> Building science/cp2k
build started at Sat Jul 2 22:08:58 UTC 2022
port directory: /usr/ports/science/cp2k
package name: cp2k-9.1.0
building for: FreeBSD 123i386-default-job-05 12.3-RELEASE-p5 FreeBSD 12.3-RELEASE-p5 i386
maintained by: yuri@FreeBSD.org
Makefile ident:
Poudriere version: 3.2.8-21-g883afb07
Host OSVERSION: 1400050
Jail OSVERSION: 1203000
Job Id: 05
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PORT_FLAGS=
PKGENV=
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---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for cp2k-9.1.0:
LIBINT=on: Use libint to evaluate integrals
====> Multiprocessing: you have to select exactly one of them
SERIAL=off: Single core (no multiprocessing)
OPENMP=on: Parallel processing support via OpenMP
MPI=off: MPI (Message Passing Interface) support
OPENMP_MPI=off: Enable both OpenMP and MPI
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
F77="gfortran11" FC="gfortran11" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc11" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc11 -fallow-argument-mismatch" MAKE=gmake PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/science/cp2k/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/cp2k/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/cp2k/work/.cache HOME=/wrkdirs/usr/ports/science/cp2k/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/cp2k/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local"
--End CONFIGURE_ENV--
--MAKE_ENV--
F77="gfortran11" FC="gfortran11" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc11" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc11 -fallow-argument-mismatch" XDG_DATA_HOME=/wrkdirs/usr/ports/science/cp2k/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/cp2k/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/cp2k/work/.cache HOME=/wrkdirs/usr/ports/science/cp2k/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/cp2k/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS=
"-O2 -pipe -fopenmp -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" /usr/lib/libgomp.so -Wl,-rpath=/usr/local/lib/gcc11 -L/usr/local/lib/gcc11 -B/usr/local/bin -fstack-protector-strong -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fopenmp -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=freebsd12 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=12.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/cp2k" EXAMPLESDIR="share/examples/cp2k" DATADIR="share/cp2k" WWWDIR="www/cp2k" ETCDIR="etc/cp2k"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/cp2k DOCSDIR=/usr/local/share/doc/cp2k EXAMPLESDIR=/usr/local/share/examples/cp2k WWWDIR=/usr/local/www/cp2k ETCDIR=/usr/local/etc/cp2k
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
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MACHINE=i386
MACHINE_ARCH=i386
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
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#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
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CC_OUTPUT_921dbbb2_58173849=yes
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CC_OUTPUT_921dbbb2_6a4fe7f5=yes
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GID=0
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--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 524288
stack size (kbytes, -s) 65536
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 1024
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===> License GPLv2+ accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> cp2k-9.1.0 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.18.3.pkg
[123i386-default-job-05] Installing pkg-1.18.3...
[123i386-default-job-05] Extracting pkg-1.18.3: .......... done
===> cp2k-9.1.0 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of cp2k-9.1.0
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv2+ accepted by the user
===> Fetching all distfiles required by cp2k-9.1.0 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv2+ accepted by the user
===> Fetching all distfiles required by cp2k-9.1.0 for building
=> SHA256 Checksum OK for cp2k-cp2k-v9.1.0_GH0.tar.gz.
=> SHA256 Checksum OK for cp2k-dbcsr-f4df17b_GH0.tar.gz.
=> SHA256 Checksum OK for pseewald-fprettify-71781aa_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv2+ accepted by the user
===> Fetching all distfiles required by cp2k-9.1.0 for building
===> Extracting for cp2k-9.1.0
=> SHA256 Checksum OK for cp2k-cp2k-v9.1.0_GH0.tar.gz.
=> SHA256 Checksum OK for cp2k-dbcsr-f4df17b_GH0.tar.gz.
=> SHA256 Checksum OK for pseewald-fprettify-71781aa_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for cp2k-9.1.0
===> Applying FreeBSD patches for cp2k-9.1.0 from /usr/ports/science/cp2k/files
===========================================================================
=======================<phase: build-depends >============================
===> cp2k-9.1.0 depends on executable: fypp - not found
===> Installing existing package /packages/All/py39-fypp-3.1.pkg
[123i386-default-job-05] Installing py39-fypp-3.1...
[123i386-default-job-05] `-- Installing py39-setuptools-62.1.0_1...
[123i386-default-job-05] | `-- Installing python39-3.9.13...
[123i386-default-job-05] | | `-- Installing gettext-runtime-0.21...
[123i386-default-job-05] | | `-- Installing indexinfo-0.3.1...
[123i386-default-job-05] | | `-- Extracting indexinfo-0.3.1: .... done
[123i386-default-job-05] | | `-- Extracting gettext-runtime-0.21: .......... done
[123i386-default-job-05] | | `-- Installing libffi-3.4.2...
[123i386-default-job-05] | | `-- Extracting libffi-3.4.2: .......... done
[123i386-default-job-05] | | `-- Installing mpdecimal-2.5.1...
[123i386-default-job-05] | | `-- Extracting mpdecimal-2.5.1: .......... done
[123i386-default-job-05] | | `-- Installing readline-8.1.2...
[123i386-default-job-05] | | `-- Extracting readline-8.1.2: .......... done
[123i386-default-job-05] | `-- Extracting python39-3.9.13: .......... done
[123i386-default-job-05] `-- Extracting py39-setuptools-62.1.0_1: .......... done
[123i386-default-job-05] Extracting py39-fypp-3.1: .......... done
=====
Message from python39-3.9.13:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py39-gdbm databases/py-gdbm@py39
py39-sqlite3 databases/py-sqlite3@py39
py39-tkinter x11-toolkits/py-tkinter@py39
===> cp2k-9.1.0 depends on executable: fypp - found
===> Returning to build of cp2k-9.1.0
===> cp2k-9.1.0 depends on executable: gfortran11 - not found
===> Installing existing package /packages/All/gcc11-11.3.0.pkg
[123i386-default-job-05] Installing gcc11-11.3.0...
[123i386-default-job-05] `-- Installing binutils-2.37_2,1...
[123i386-default-job-05] `-- Extracting binutils-2.37_2,1: .......... done
[123i386-default-job-05] `-- Installing gmp-6.2.1...
[123i386-default-job-05] `-- Extracting gmp-6.2.1: .......... done
[123i386-default-job-05] `-- Installing mpc-1.2.1...
[123i386-default-job-05] | `-- Installing mpfr-4.1.0_1...
[123i386-default-job-05] | `-- Extracting mpfr-4.1.0_1: .......... done
[123i386-default-job-05] `-- Extracting mpc-1.2.1: ......... done
[123i386-default-job-05] Extracting gcc11-11.3.0: .......... done
=====
Message from gcc11-11.3.0:
--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc11
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
===> cp2k-9.1.0 depends on executable: gfortran11 - found
===> Returning to build of cp2k-9.1.0
===> cp2k-9.1.0 depends on package: gmake>=4.3 - not found
===> Installing existing package /packages/All/gmake-4.3_2.pkg
[123i386-default-job-05] Installing gmake-4.3_2...
[123i386-default-job-05] Extracting gmake-4.3_2: .......... done
===> cp2k-9.1.0 depends on package: gmake>=4.3 - found
===> Returning to build of cp2k-9.1.0
===> cp2k-9.1.0 depends on file: /usr/local/bin/python3.9 - found
===> cp2k-9.1.0 depends on file: /usr/local/bin/as - found
===========================================================================
=======================<phase: lib-depends >============================
===> cp2k-9.1.0 depends on shared library: libblas.so - not found
===> Installing existing package /packages/All/blas-3.10.1.pkg
[123i386-default-job-05] Installing blas-3.10.1...
[123i386-default-job-05] Extracting blas-3.10.1: ........ done
===> cp2k-9.1.0 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so)
===> Returning to build of cp2k-9.1.0
===> cp2k-9.1.0 depends on shared library: libfftw3.so - not found
===> Installing existing package /packages/All/fftw3-3.3.10_1.pkg
[123i386-default-job-05] Installing fftw3-3.3.10_1...
[123i386-default-job-05] Extracting fftw3-3.3.10_1: .......... done
===> cp2k-9.1.0 depends on shared library: libfftw3.so - found (/usr/local/lib/libfftw3.so)
===> Returning to build of cp2k-9.1.0
===> cp2k-9.1.0 depends on shared library: liblapack.so - not found
===> Installing existing package /packages/All/lapack-3.10.1.pkg
[123i386-default-job-05] Installing lapack-3.10.1...
[123i386-default-job-05] Extracting lapack-3.10.1: .......... done
===> cp2k-9.1.0 depends on shared library: liblapack.so - found (/usr/local/lib/liblapack.so)
===> Returning to build of cp2k-9.1.0
===> cp2k-9.1.0 depends on shared library: libint.so - not found
===> Installing existing package /packages/All/libint-1.2.1.15.pkg
[123i386-default-job-05] Installing libint-1.2.1.15...
[123i386-default-job-05] Extracting libint-1.2.1.15: .......... done
===> cp2k-9.1.0 depends on shared library: libint.so - found (/usr/local/lib/libint.so)
===> Returning to build of cp2k-9.1.0
===========================================================================
=======================<phase: configure >============================
===> Configuring for cp2k-9.1.0
The OPENMP and OPENMP_MPI options require math/fftw3
to be built and installed with the OPENMP option ON
*** Error code 1
Stop.
make: stopped in /usr/ports/science/cp2k