[package - 123amd64-quarterly][biology/molden] Failed for molden-6.7,1 in build

From: <pkg-fallout_at_FreeBSD.org>
Date: Sat, 02 Jul 2022 01:54:59 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     jmd@FreeBSD.org
Log URL:        http://beefy2.nyi.freebsd.org/data/123amd64-quarterly/ecc6a37c0d3d/logs/molden-6.7,1.log
Build URL:      http://beefy2.nyi.freebsd.org/build.html?mastername=123amd64-quarterly&build=ecc6a37c0d3d
Log:

=>> Building biology/molden
build started at Sat Jul  2 01:53:36 UTC 2022
port directory: /usr/ports/biology/molden
package name: molden-6.7,1
building for: FreeBSD 123amd64-quarterly-job-08 12.3-RELEASE-p5 FreeBSD 12.3-RELEASE-p5 amd64
maintained by: jmd@FreeBSD.org
Makefile ident: 
Poudriere version: 3.2.8-21-g883afb07
Host OSVERSION: 1400050
Jail OSVERSION: 1203000
Job Id: 08

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===> The following configuration options are available for molden-6.7,1:
     DATA=on: Install data files
     DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings
---End OPTIONS List---

--MAINTAINER--
jmd@FreeBSD.org
--End MAINTAINER--

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--End CONFIGURE_ARGS--

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--PLIST_SUB--
PORTDOCS="" OSREL=12.3 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/molden"  EXAMPLESDIR="share/examples/molden"  DATADIR="share/molden"  WWWDIR="www/molden"  ETCDIR="etc/molden"
--End PLIST_SUB--

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PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/molden DOCSDIR=/usr/local/share/doc/molden EXAMPLESDIR=/usr/local/share/examples/molden  WWWDIR=/usr/local/www/molden ETCDIR=/usr/local/etc/molden
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=======================<phase: check-sanity   >============================
===>  License Molden accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   molden-6.7,1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.17.5_1.pkg
[123amd64-quarterly-job-08] Installing pkg-1.17.5_1...
[123amd64-quarterly-job-08] Extracting pkg-1.17.5_1: .......... done
===>   molden-6.7,1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of molden-6.7,1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License Molden accepted by the user
===> Fetching all distfiles required by molden-6.7,1 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License Molden accepted by the user
===> Fetching all distfiles required by molden-6.7,1 for building
=> SHA256 Checksum OK for molden6.7.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License Molden accepted by the user
===> Fetching all distfiles required by molden-6.7,1 for building
===>  Extracting for molden-6.7,1
=> SHA256 Checksum OK for molden6.7.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for molden-6.7,1
===========================================================================
=======================<phase: build-depends  >============================
===>   molden-6.7,1 depends on executable: makedepend - not found
===>   Installing existing package /packages/All/makedepend-1.0.6,1.pkg
[123amd64-quarterly-job-08] Installing makedepend-1.0.6,1...
[123amd64-quarterly-job-08] Extracting makedepend-1.0.6,1: ..... done
===>   molden-6.7,1 depends on executable: makedepend - found
===>   Returning to build of molden-6.7,1
===>   molden-6.7,1 depends on executable: gfortran10 - not found
===>   Installing existing package /packages/All/gcc10-10.3.0.pkg
[123amd64-quarterly-job-08] Installing gcc10-10.3.0...
[123amd64-quarterly-job-08] `-- Installing binutils-2.37_2,1...
[123amd64-quarterly-job-08] |   `-- Installing gettext-runtime-0.21...
[123amd64-quarterly-job-08] |   | `-- Installing indexinfo-0.3.1...
[123amd64-quarterly-job-08] |   | `-- Extracting indexinfo-0.3.1: .... done
[123amd64-quarterly-job-08] |   `-- Extracting gettext-runtime-0.21: .......... done
[123amd64-quarterly-job-08] `-- Extracting binutils-2.37_2,1: .......... done
[123amd64-quarterly-job-08] `-- Installing gmp-6.2.1...
<snip>
               ^
src/xwin.c:79305:35: warning: implicit declaration of function 'isANY' is invalid in C99 [-Wimplicit-function-declaration]
    if (!(xyzp->ianz[iat] == 8 && isANY(xyzp->ityp[iat],Oany,3) && xc == 2)) 
                                  ^
src/xwin.c:79334:35: warning: implicit declaration of function 'isANY' is invalid in C99 [-Wimplicit-function-declaration]
    if (!(xyzp->ianz[iat] == 7 && isANY(xyzp->ityp[iat],Nany,7) && xc == 1)) return 0;
                                  ^
src/xwin.c:79361:35: warning: implicit declaration of function 'isANY' is invalid in C99 [-Wimplicit-function-declaration]
    if (!(xyzp->ianz[iat] == 7 && isANY(xyzp->ityp[iat],Nany,7) && xc == 2)) return 0;
                                  ^
src/xwin.c:79443:9: warning: implicit declaration of function 'isANY' is invalid in C99 [-Wimplicit-function-declaration]
           if (isANY(xyzp->ianz[la-1],GrpR,6)) {
               ^
src/xwin.c:79460:35: warning: implicit declaration of function 'isANY' is invalid in C99 [-Wimplicit-function-declaration]
    if (!(xyzp->ianz[iat] == 6 && isANY(xyzp->ityp[iat],C2ar,2))) return 0;
                                  ^
src/xwin.c:79490:35: warning: implicit declaration of function 'isANY' is invalid in C99 [-Wimplicit-function-declaration]
    if (!(xyzp->ianz[iat] == 6 && isANY(xyzp->ityp[iat],Cany,4))) return 0;
                                  ^
src/xwin.c:79522:34: warning: implicit declaration of function 'isANY' is invalid in C99 [-Wimplicit-function-declaration]
    if (xyzp->ianz[iat] != 16 || isANY(xyzp->ityp[iat],Sany,4)) return 0;
                                 ^
src/xwin.c:79563:9: warning: implicit declaration of function 'isANY' is invalid in C99 [-Wimplicit-function-declaration]
           if (isANY(xyzp->ianz[la-1],GrpR,6)) ir++;
               ^
src/xwin.c:79599:9: warning: implicit declaration of function 'isANY' is invalid in C99 [-Wimplicit-function-declaration]
           if (isANY(xyzp->ianz[la-1],GrpR,6)) ir++;
               ^
src/xwin.c:79630:7: warning: implicit declaration of function 'isANY' is invalid in C99 [-Wimplicit-function-declaration]
                if (isANY(xyzp->ityp[la-1],Oany,3)) {
                    ^
src/xwin.c:79653:34: warning: implicit declaration of function 'isANY' is invalid in C99 [-Wimplicit-function-declaration]
    if (xyzp->ianz[iat] != 7 || !isANY(xyzp->ityp[iat],N2ar,2)) return 0;
                                 ^
src/xwin.c:79685:34: warning: implicit declaration of function 'isANY' is invalid in C99 [-Wimplicit-function-declaration]
    if (xyzp->ianz[iat] != 7 || !isANY(xyzp->ityp[iat],Nany,7)) return 0;
                                 ^
src/xwin.c:79835:9: warning: implicit declaration of function 'isANY' is invalid in C99 [-Wimplicit-function-declaration]
           if (isANY(xyzp->ianz[la-1],GrpR,6)) {
               ^
src/xwin.c:79857:6: warning: implicit declaration of function 'isANY' is invalid in C99 [-Wimplicit-function-declaration]
        if (isANY(C->ityp[iring[i]],C2ar,2)) {
            ^
src/xwin.c:81791:10: warning: implicit declaration of function 'Find_Lig_Conf' is invalid in C99 [-Wimplicit-function-declaration]
                   if (Find_Lig_Conf(conf,i)) {
                       ^
src/xwin.c:85179:2: warning: implicit declaration of function 'ringd_' is invalid in C99 [-Wimplicit-function-declaration]
        ringd_(&i1,iring,&nring,&ZERO,
        ^
src/xwin.c:85264:2: warning: implicit declaration of function 'ringd_' is invalid in C99 [-Wimplicit-function-declaration]
        ringd_(&i1,iring,&nring,&ZERO,
        ^
src/xwin.c:86426:2: warning: implicit declaration of function 'ispnd_' is invalid in C99 [-Wimplicit-function-declaration]
        ispnd_(&irs,&i1,&irng,&ONE,&ZERO,
        ^
src/xwin.c:86970:4: warning: implicit declaration of function 'filop_' is invalid in C99 [-Wimplicit-function-declaration]
   filop_(&SEVENTYSEVEN,&ONE,&ZERO,&ZERO,&ierr);
   ^
src/xwin.c:86989:2: warning: implicit declaration of function 'rdmod_' is invalid in C99 [-Wimplicit-function-declaration]
        rdmod_(&ZERO,&ZERO,&ZERO,&istat,
        ^
src/xwin.c:87032:2: warning: implicit declaration of function 'outmod_' is invalid in C99 [-Wimplicit-function-declaration]
        outmod_(&SEVENTYSEVEN,
        ^
src/xwin.c:87043:2: warning: implicit declaration of function 'sdfsep_' is invalid in C99 [-Wimplicit-function-declaration]
        sdfsep_(&SEVENTYSEVEN);
        ^
src/xwin.c:87073:4: warning: implicit declaration of function 'filclo_' is invalid in C99 [-Wimplicit-function-declaration]
   filclo_(&SEVENTYSEVEN);
   ^
src/xwin.c:87397:4: warning: implicit declaration of function 'filop_' is invalid in C99 [-Wimplicit-function-declaration]
   filop_(&SEVENTYSEVEN,&ONE,&ZERO,&ZERO,&ierr);
   ^
src/xwin.c:87416:2: warning: implicit declaration of function 'getmod_' is invalid in C99 [-Wimplicit-function-declaration]
        getmod_(&igtmo,&ZERO,
        ^
src/xwin.c:87450:5: warning: implicit declaration of function 'ispnd_' is invalid in C99 [-Wimplicit-function-declaration]
           ispnd_(&irs,&i1,&irng,&ONE,&ONE,
           ^
src/xwin.c:87476:2: warning: implicit declaration of function 'calgad_' is invalid in C99 [-Wimplicit-function-declaration]
        calgad_(&iasel,&ZERO,&istat,
        ^
src/xwin.c:87488:2: warning: implicit declaration of function 'wrmod_' is invalid in C99 [-Wimplicit-function-declaration]
        wrmod_(&SEVENTYSEVEN,
        ^
src/xwin.c:87519:4: warning: implicit declaration of function 'filclo_' is invalid in C99 [-Wimplicit-function-declaration]
   filclo_(&SEVENTYSEVEN);
   ^
src/xwin.c:87681:2: warning: implicit declaration of function 'getmod_' is invalid in C99 [-Wimplicit-function-declaration]
        getmod_(&igtmo,&iadd,
        ^
src/xwin.c:87723:5: warning: implicit declaration of function 'ispnd_' is invalid in C99 [-Wimplicit-function-declaration]
           ispnd_(&irs,&i1,&irng,&ONE,&ONE,
           ^
src/xwin.c:87750:2: warning: implicit declaration of function 'calgad_' is invalid in C99 [-Wimplicit-function-declaration]
        calgad_(&iasel,&ZERO,&istat,
        ^
src/xwin.c:87765:2: warning: implicit declaration of function 'dotyd_' is invalid in C99 [-Wimplicit-function-declaration]
        dotyd_(&icel,
        ^
src/xwin.c:87833:2: warning: implicit declaration of function 'gettnd_' is invalid in C99 [-Wimplicit-function-declaration]
        gettnd_(&igttnk,&ZERO,&ipdbon,&iffset,&iheat,&heat,
        ^
src/xwin.c:87875:5: warning: implicit declaration of function 'ispnd_' is invalid in C99 [-Wimplicit-function-declaration]
           ispnd_(&irs,&i1,&irng,&ONE,&ONE,
           ^
src/xwin.c:91637:3: warning: implicit declaration of function 'cpkeyw_' is invalid in C99 [-Wimplicit-function-declaration]
  cpkeyw_();
  ^
src/xwin.c:91638:3: warning: implicit declaration of function 'filop_' is invalid in C99 [-Wimplicit-function-declaration]
  filop_(&SEVENTYSEVEN,&ONE,&ONE,&ZERO,&ierr);
  ^
src/xwin.c:91654:3: warning: implicit declaration of function 'cubtst_' is invalid in C99 [-Wimplicit-function-declaration]
  cubtst_(&SEVENTYSEVEN,&ijag);
  ^
src/xwin.c:91665:2: warning: implicit declaration of function 'rdpld_' is invalid in C99 [-Wimplicit-function-declaration]
        rdpld_(&hlpsrf->nps1,&hlpsrf->nps2,&hlpsrf->nps3,&SEVENTYSEVEN,&istat,
        ^
src/xwin.c:91678:3: warning: implicit declaration of function 'filclo_' is invalid in C99 [-Wimplicit-function-declaration]
  filclo_(&SEVENTYSEVEN);
  ^
src/xwin.c:91706:2: warning: implicit declaration of function 'rdpld_' is invalid in C99 [-Wimplicit-function-declaration]
        rdpld_(&hlpsrf->nps1,&hlpsrf->nps2,&hlpsrf->nps3,&SEVENTYSEVEN,&istat,
        ^
src/xwin.c:91913:3: warning: implicit declaration of function 'cpkeyw_' is invalid in C99 [-Wimplicit-function-declaration]
  cpkeyw_();
  ^
src/xwin.c:91914:3: warning: implicit declaration of function 'filop_' is invalid in C99 [-Wimplicit-function-declaration]
  filop_(&SEVENTYSEVEN,&ONE,&ONE,&ZERO,&ierr);
  ^
src/xwin.c:91940:3: warning: implicit declaration of function 'cubtst_' is invalid in C99 [-Wimplicit-function-declaration]
  cubtst_(&SEVENTYSEVEN,&ijag);
  ^
src/xwin.c:91951:2: warning: implicit declaration of function 'rdpld_' is invalid in C99 [-Wimplicit-function-declaration]
        rdpld_(&hlpsrf->nps1,&hlpsrf->nps2,&hlpsrf->nps3,&SEVENTYSEVEN,&istat,
        ^
src/xwin.c:91964:3: warning: implicit declaration of function 'filclo_' is invalid in C99 [-Wimplicit-function-declaration]
  filclo_(&SEVENTYSEVEN);
  ^
src/xwin.c:91997:2: warning: implicit declaration of function 'rdpld_' is invalid in C99 [-Wimplicit-function-declaration]
        rdpld_(&hlpsrf->nps1,&hlpsrf->nps2,&hlpsrf->nps3,&SEVENTYSEVEN,&istat,
        ^
src/xwin.c:92260:3: warning: implicit declaration of function 'cpkeyw_' is invalid in C99 [-Wimplicit-function-declaration]
  cpkeyw_();
  ^
src/xwin.c:92261:3: warning: implicit declaration of function 'filop_' is invalid in C99 [-Wimplicit-function-declaration]
  filop_(&SEVENTYSEVEN,&ONE,&ONE,&ZERO,&ierr);
  ^
src/xwin.c:92287:3: warning: implicit declaration of function 'cubtst_' is invalid in C99 [-Wimplicit-function-declaration]
  cubtst_(&SEVENTYSEVEN,&ijag);
  ^
src/xwin.c:92298:2: warning: implicit declaration of function 'rdpld_' is invalid in C99 [-Wimplicit-function-declaration]
        rdpld_(&hlpsrf->nps1,&hlpsrf->nps2,&hlpsrf->nps3,&SEVENTYSEVEN,&istat,
        ^
src/xwin.c:92311:3: warning: implicit declaration of function 'filclo_' is invalid in C99 [-Wimplicit-function-declaration]
  filclo_(&SEVENTYSEVEN);
  ^
src/xwin.c:92343:2: warning: implicit declaration of function 'rdpld_' is invalid in C99 [-Wimplicit-function-declaration]
        rdpld_(&hlpsrf->nps1,&hlpsrf->nps2,&hlpsrf->nps3,&SEVENTYSEVEN,&istat,
        ^
src/xwin.c:92546:3: warning: implicit declaration of function 'cpkeyw_' is invalid in C99 [-Wimplicit-function-declaration]
  cpkeyw_();
  ^
src/xwin.c:92547:3: warning: implicit declaration of function 'filop_' is invalid in C99 [-Wimplicit-function-declaration]
  filop_(&SEVENTYSEVEN,&ONE,&ONE,&ZERO,&ierr);
  ^
src/xwin.c:92563:3: warning: implicit declaration of function 'cubtst_' is invalid in C99 [-Wimplicit-function-declaration]
  cubtst_(&SEVENTYSEVEN,&ijag);
  ^
src/xwin.c:92574:2: warning: implicit declaration of function 'rdpld_' is invalid in C99 [-Wimplicit-function-declaration]
        rdpld_(&hlpsrf->nps1,&hlpsrf->nps2,&hlpsrf->nps3,&SEVENTYSEVEN,&istat,
        ^
src/xwin.c:92587:3: warning: implicit declaration of function 'filclo_' is invalid in C99 [-Wimplicit-function-declaration]
  filclo_(&SEVENTYSEVEN);
  ^
src/xwin.c:92615:2: warning: implicit declaration of function 'rdpld_' is invalid in C99 [-Wimplicit-function-declaration]
        rdpld_(&hlpsrf->nps1,&hlpsrf->nps2,&hlpsrf->nps3,&SEVENTYSEVEN,&istat,
        ^
683 warnings generated.
gfortran10  -o molden src/atomdens.o src/molden.o src/above.o src/actcal.o src/basprt.o src/calc.o src/caldis.o src/calfa.o src/cntour.o src/cnvgam.o src/cnvgau.o src/convzmat.o src/cross.o src/crprod.o src/datin.o src/defpc.o src/defrad.o src/del.o src/denmak.o src/densmat.o src/distot.o src/dmat.o src/docent.o src/draw.o src/euler.o src/eulerh.o src/files.o src/fndcal.o src/gampoi.o src/gaupoi.o src/gaussian.o src/geogam.o src/geogau.o src/getmul.o src/getpoi.o src/getreal.o src/gmmcnv.o src/grdcal.o src/gstr.o src/hidedr.o src/impsc.o src/locatc.o src/maxmin.o src/mdout.o src/mmcnv.o src/mopaco.o src/mopin.o src/mulprt.o src/occin.o src/oriin.o src/parang.o src/pareul.o src/parfc.o src/parori.o src/parpla.o src/parstp.o src/planky.o src/plend.o src/plini.o src/plmol.o src/plotgh.o src/plotgr.o src/plotin.o src/plpost.o src/prev.o src/proato.o src/procnv.o src/progeo.o src/rdbas.o src/rdcor.o src/rdgam.o src/rdgaus.o src/rdinfo.o src/rdpdb.o src/rdvect.o src/reada.o src/readel.o sr
 c/readvv.o src/renorm.o src/rmomen.o src/rota.o src/rotatg.o src/rotb.o src/rotc.o src/rotcor.o src/rotd.o src/rotfir.o src/rotm.o src/rotmom.o src/scback.o src/search.o src/searchd.o src/setang.o src/setbas.o src/settc.o src/shsort.o src/site.o src/slater.o src/stoc.o src/tessa.o src/tk4014.o src/tocap.o src/tocapf.o src/tomold.o src/under.o src/vaxdum.o src/vclr.o src/vec.o src/vlen.o src/vsc1.o src/wrinfo.o src/zread.o src/samino.o src/prtcal.o src/actss.o src/actami.o src/plden.o src/heaps.o src/den3d.o src/dencnt.o src/plhead.o src/pltab.o src/eucmol.o src/pl3dm.o src/plbox.o src/selsol.o src/atmd.o src/dolift.o src/spaced.o src/snypnt.o src/eulstr.o src/calct.o src/coeffs.o src/epint.o src/espot.o src/fcij.o src/fmt.o src/genaos.o src/rys.o src/ryspol.o src/rysrot.o src/thrcen.o src/twocen.o src/ifblen.o src/rott.o src/plmolp.o src/wrzmat.o src/rdchx.o src/obin.o src/pred.o src/gargpl.o src/inferr.o src/freqs.o src/getmop.o src/brklin.o src/getzm.o src/xyzcoo.o src/geomop.o sr
 c/dumzm.o src/getxyz.o src/espchrg.o src/pro!
 xim.o src/rdgamu.o src/plvrml.o src/molsint.o src/runjob.o src/rdmsf.o src/wrmsf.o src/rdmolf.o src/adf_fun.o src/rotpol.o src/extbas.o src/rdcpmd.o src/eem.o src/asspmf.o src/srfcal.o src/rdqchm.o src/rdorca.o src/rdmaux.o src/rdnwch.o src/mpdum.o src/xwin.o -lX11 -lm
/usr/local/bin/ld: src/xwin.o: in function `dos2u':
xwin.c:(.text+0x4291): warning: warning: mktemp() possibly used unsafely; consider using mkstemp()
/usr/local/bin/ld: src/xwin.o: in function `gauss':
xwin.c:(.text+0x33f6): undefined reference to `exp@GLIBC_2.2.5'
/usr/local/bin/ld: src/xwin.o: in function `calgas_':
xwin.c:(.text+0xc40e): undefined reference to `memcpy@GLIBC_2.2.5'
/usr/local/bin/ld: src/xwin.o: in function `allcoo_':
xwin.c:(.text+0xcb39): undefined reference to `memcpy@GLIBC_2.2.5'
/usr/local/bin/ld: xwin.c:(.text+0xce43): undefined reference to `memcpy@GLIBC_2.2.5'
/usr/local/bin/ld: src/xwin.o: in function `SaveFirstStruct':
xwin.c:(.text+0x1521b): undefined reference to `memcpy@GLIBC_2.2.5'
/usr/local/bin/ld: xwin.c:(.text+0x152e6): undefined reference to `memcpy@GLIBC_2.2.5'
/usr/local/bin/ld: src/xwin.o:xwin.c:(.text+0x1552f): more undefined references to `memcpy@GLIBC_2.2.5' follow
collect2: error: ld returned 1 exit status
gmake[1]: *** [makefile:301: molden] Error 1
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/molden/work/molden6.7'
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/molden