From nobody Tue Dec 20 16:18:04 2022 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4Nc1vc3yGvz1G3Hb for ; Tue, 20 Dec 2022 16:18:04 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4Nc1vc2FbWz3KZx; Tue, 20 Dec 2022 16:18:04 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1671553084; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc; bh=6LpTtFzJp8qIxbENWMy/mPYPbhO+iESh6YLp4Y4Kol0=; b=DE5s05DDAbV7Zi+IcvMjhgg10Do7DsRiWILtw7VlCCgNdggnYVy+b7TODVOKqXjzqqRqt1 FgHbmRZMbLJO7yUWlZAy5W5Gh0eAvokbNwbszNIRO2LohzS+d8aXXi28EeJXi6W3iF+guD ietNU5Cl+sbE6eI2EFHYDCeIXdaD/pGSFdwoHnYteZ0i8dxHYRZROmyFu6BN2RsMqIbcQh DiNZ8R7nmOc4qlKsc3zaYSSJetJ6usthtauk49hu9J+6rQQhpvQf2k0LOgOPCVVG3dnUkq 9TAB7oD51fGtwrsKXUYPa/YVxvGip5cju6BPbILflFlOv3MXGgKhcs+rtFGO6g== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1671553084; a=rsa-sha256; cv=none; b=oaFczgOdDvgL3PqWUI1Jlcvy0fPDX0TtkV2aS9lyKxFPg7KIcnrgbAWAgnNXAAob3y14sl ostlqcjBaql7AGMHwVvrjD/bnR4e2zu7Ru3yhZ4sbCJ+AKXfAJ5oARN8778ARLTBhn3HJU eZOU12faL67/W4Uj9wSayHR89GH56kLzdiHevCmJx07Rot0ypJn2kUOsxkkbmrYOHtDjdD VJ/atZ1wRH44hDuQKKdsegQQ39yeZiDNIT/brVfLkyzvTTFC/9wv6LjS3Dr5Yb5vHnbQ8H SgnEElVIQEJmEVdO39aMaGZzjKucCz1+0HyQJRYTdrK3ir5Vp327Zq7BqT/bxA== Received: from beefy6.nyi.freebsd.org (beefy6.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:15]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4Nc1vc1JM8zhW3; Tue, 20 Dec 2022 16:18:04 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy6.nyi.freebsd.org (localhost [127.0.0.1]) by beefy6.nyi.freebsd.org (8.16.1/8.16.1) with ESMTP id 2BKGI42O037986; Tue, 20 Dec 2022 16:18:04 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by beefy6.nyi.freebsd.org (8.16.1/8.16.1/Submit) id 2BKGI45c037985; Tue, 20 Dec 2022 16:18:04 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Tue, 20 Dec 2022 16:18:04 GMT From: pkg-fallout@FreeBSD.org Message-Id: <202212201618.2BKGI45c037985@beefy6.nyi.freebsd.org> To: yuri@FreeBSD.org Subject: [package - 123amd64-default][science/chemicalfun] Failed for chemicalfun-0.1.3_1 in build Cc: pkg-fallout@FreeBSD.org X-ThisMailContainsUnwantedMimeParts: N List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: https://pkg-status.freebsd.org/beefy6/data/123amd64-default/3a8cf525382f/logs/chemicalfun-0.1.3_1.log Build URL: https://pkg-status.freebsd.org/beefy6/build.html?mastername=123amd64-default&build=3a8cf525382f Log: =>> Building science/chemicalfun build started at Tue Dec 20 16:16:35 UTC 2022 port directory: /usr/ports/science/chemicalfun package name: chemicalfun-0.1.3_1 building for: FreeBSD 123amd64-default-job-06 12.3-RELEASE-p10 FreeBSD 12.3-RELEASE-p10 amd64 maintained by: yuri@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-23-ga7f8d188 Host OSVERSION: 1400073 Jail OSVERSION: 1203000 Job Id: 06 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1203000 UNAME_v=FreeBSD 12.3-RELEASE-p10 UNAME_r=12.3-RELEASE-p10 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-23-ga7f8d188 MASTERMNT=/usr/local/poudriere/data/.m/123amd64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/123amd64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=123amd64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/123amd64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for chemicalfun-0.1.3_1: PYTHON=on: Python bindings or support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/science/chemicalfun/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/chemicalfun/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/chemicalfun/work/.cache HOME=/wrkdirs/usr/ports/science/chemicalfun/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/chemicalfun/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/chemicalfun/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/science/chemicalfun/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/chemicalfun/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/chemicalfun/work/.cache HOME=/wrkdirs/usr/ports/science/chemicalfun/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/chemicalfun/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/chemicalfun/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/science/chemicalfun/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -L/usr/local/lib -lfmt -fstack-protector-strong " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-pro tector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON="" NO_PYTHON="@comment " CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=freebsd12 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=12.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/chemicalfun" EXAMPLESDIR="share/examples/chemicalfun" DATADIR="share/chemicalfun" WWWDIR="www/chemicalfun" ETCDIR="etc/chemicalfun" --End PLIST_SUB-- --SUB_LIST-- PYTHON="" NO_PYTHON="@comment " PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/chemicalfun DOCSDIR=/usr/local/share/doc/chemicalfun EXAMPLESDIR=/usr/local/share/examples/chemicalfun WWWDIR=/usr/local/www/chemicalfun ETCDIR=/usr/local/etc/chemicalfun --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 10.0.1 (git@github.com:llvm/llvm-project.git llvmorg-10.0.1-0-gef32c611aa2) Target: x86_64-unknown-freebsd12.3 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 10.0.1 (git@github.com:llvm/llvm-project.git llvmorg-10.0.1-0-gef32c611aa2) Target: x86_64-unknown-freebsd12.3 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_53255a77=yes CC_OUTPUT_921dbbb2_911cfe02=error: invalid value 'c++2b' in '-std=c++2b' note: use 'c++98' or 'c++03' for 'ISO C++ 1998 with amendments' standard note: use 'gnu++98' or 'gnu++03' for 'ISO C++ 1998 with amendments and GNU extensions' standard note: use 'c++11' for 'ISO C++ 2011 with amendments' standard note: use 'gnu++11' for 'ISO C++ 2011 with amendments and GNU extensions' standard note: use 'c++14' for 'ISO C++ 2014 with amendments' standard note: use 'gnu++14' for 'ISO C++ 2014 with amendments and GNU extensions' standard note: use 'c++17' for 'ISO C++ 2017 with amendments' standard note: use 'gnu++17' for 'ISO C++ 2017 with amendments and GNU extensions' standard note: use 'c++20' for 'ISO C++ 2020 DIS' standard note: use 'gnu++20' for 'ISO C++ 2020 DIS with GNU extensions' standard CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes CC_OUTPUT_921dbbb2_af59ad06=yes CC_OUTPUT_921dbbb2_a15f3fcf=error: invalid value 'gnu++2b' in '-std=gnu++2b' note: use 'c++98' or 'c++03' for 'ISO C++ 1998 with amendments' standard note: use 'gnu++98' or 'gnu++03' for 'ISO C++ 1998 with amendments and GNU extensions' standard note: use 'c++11' for 'ISO C++ 2011 with amendments' standard note: use 'gnu++11' for 'ISO C++ 2011 with amendments and GNU extensions' standard note: use 'c++14' for 'ISO C++ 2014 with amendments' standard note: use 'gnu++14' for 'ISO C++ 2014 with amendments and GNU extensions' standard note: use 'c++17' for 'ISO C++ 2017 with amendments' standard note: use 'gnu++17' for 'ISO C++ 2017 with amendments and GNU extensions' standard note: use 'c++20' for 'ISO C++ 2020 DIS' standard note: use 'gnu++20' for 'ISO C++ 2020 DIS with GNU extensions' standard _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 10.0.1 (git@github.com:llvm/llvm-project.git llvmorg-10.0.1-0-gef32c611aa2) Target: x86_64-unknown-freebsd12.3 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=amd64 OPSYS=FreeBSD _OSRELEASE=12.3-RELEASE-p10 OSREL=12.3 OSVERSION=1203000 PYTHONBASE=/usr/local HAVE_COMPAT_IA32_KERN=YES CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== =========================================================================== =================================================== ===> chemicalfun-0.1.3_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.19.0.pkg [123amd64-default-job-06] Installing pkg-1.19.0... [123amd64-default-job-06] Extracting pkg-1.19.0: .......... done ===> chemicalfun-0.1.3_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of chemicalfun-0.1.3_1 =========================================================================== =================================================== =========================================================================== =================================================== ===> Fetching all distfiles required by chemicalfun-0.1.3_1 for building =========================================================================== =================================================== ===> Fetching all distfiles required by chemicalfun-0.1.3_1 for building => SHA256 Checksum OK for chemicalfun-0.1.3.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Fetching all distfiles required by chemicalfun-0.1.3_1 for building ===> Extracting for chemicalfun-0.1.3_1 => SHA256 Checksum OK for chemicalfun-0.1.3.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for chemicalfun-0.1.3_1 ===> Applying FreeBSD patches for chemicalfun-0.1.3_1 from /usr/ports/science/chemicalfun/files =========================================================================== =================================================== ===> chemicalfun-0.1.3_1 depends on package: nlohmann-json>0 - not found ===> Installing existing package /packages/All/nlohmann-json-3.11.2.pkg [123amd64-default-job-06] Installing nlohmann-json-3.11.2... [123amd64-default-job-06] Extracting nlohmann-json-3.11.2: .......... done ===> chemicalfun-0.1.3_1 depends on package: nlohmann-json>0 - found ===> Returning to build of chemicalfun-0.1.3_1 ===> chemicalfun-0.1.3_1 depends on package: spdlog>0 - not found ===> Installing existing package /packages/All/spdlog-1.11.0_1.pkg [123amd64-default-job-06] Installing spdlog-1.11.0_1... [123amd64-default-job-06] `-- Installing libfmt-9.1.0... [123amd64-default-job-06] `-- Extracting libfmt-9.1.0: .......... done [123amd64-default-job-06] Extracting spdlog-1.11.0_1: .......... done ===> chemicalfun-0.1.3_1 depends on package: spdlog>0 - found ===> Returning to build of chemicalfun-0.1.3_1 ===> chemicalfun-0.1.3_1 depends on package: pybind11>0 - not found ===> Installing existing package /packages/All/pybind11-2.10.1.pkg [123amd64-default-job-06] Installing pybind11-2.10.1... [123amd64-default-job-06] Extracting pybind11-2.10.1: .......... done ===> chemicalfun-0.1.3_1 depends on package: pybind11>0 - found ===> Returning to build of chemicalfun-0.1.3_1 ===> chemicalfun-0.1.3_1 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.24.3_2.pkg [123amd64-default-job-06] Installing cmake-core-3.24.3_2... [123amd64-default-job-06] `-- Installing expat-2.5.0... [123amd64-default-job-06] `-- Extracting expat-2.5.0: .......... done [123amd64-default-job-06] `-- Installing jsoncpp-1.9.5... [123amd64-default-job-06] `-- Extracting jsoncpp-1.9.5: .......... done [123amd64-default-job-06] `-- Installing libuv-1.44.2... [123amd64-default-job-06] `-- Extracting libuv-1.44.2: .......... done [123amd64-default-job-06] `-- Installing rhash-1.4.3... [123amd64-default-job-06] | `-- Installing gettext-runtime-0.21.1... [123amd64-default-job-06] | | `-- Installing indexinfo-0.3.1... [123amd64-default-job-06] | | `-- Extracting indexinfo-0.3.1: .... done [123amd64-default-job-06] | `-- Extracting gettext-runtime-0.21.1: .......... done [123amd64-default-job-06] `-- Extracting rhash-1.4.3: .......... done [123amd64-default-job-06] Extracting cmake-core-3.24.3_2: .......... done ===> chemicalfun-0.1.3_1 depends on file: /usr/local/bin/cmake - found ===> Returning to build of chemicalfun-0.1.3_1 ===> chemicalfun-0.1.3_1 depends on executable: ninja - not found ===> Installing existing package /packages/All/ninja-1.11.1,2.pkg [123amd64-default-job-06] Installing ninja-1.11.1,2... [123amd64-default-job-06] `-- Installing python39-3.9.16... [123amd64-default-job-06] | `-- Installing libffi-3.4.4... [123amd64-default-job-06] | `-- Extracting libffi-3.4.4: .......... done [123amd64-default-job-06] | `-- Installing mpdecimal-2.5.1... [123amd64-default-job-06] | `-- Extracting mpdecimal-2.5.1: .......... done [123amd64-default-job-06] | `-- Installing readline-8.2.0... [123amd64-default-job-06] | `-- Extracting readline-8.2.0: .......... done [123amd64-default-job-06] `-- Extracting python39-3.9.16: .......... done [123amd64-default-job-06] Extracting ninja-1.11.1,2: ........ done ===== Message from python39-3.9.16: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 ===> chemicalfun-0.1.3_1 depends on executable: ninja - found ===> Returning to build of chemicalfun-0.1.3_1 ===> chemicalfun-0.1.3_1 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - not found ===> Installing existing package /packages/All/eigen-3.4.0_1.pkg [123amd64-default-job-06] Installing eigen-3.4.0_1... [123amd64-default-job-06] `-- Installing blas-3.11.0... [123amd64-default-job-06] | `-- Installing gcc12-12.2.0_5... [123amd64-default-job-06] | | `-- Installing binutils-2.39,1... [123amd64-default-job-06] | | `-- Extracting binutils-2.39,1: .......... done [123amd64-default-job-06] | | `-- Installing gmp-6.2.1... [123amd64-default-job-06] | | `-- Extracting gmp-6.2.1: .......... done [123amd64-default-job-06] | | `-- Installing mpc-1.2.1... [123amd64-default-job-06] | | `-- Installing mpfr-4.1.1... [123amd64-default-job-06] | | `-- Extracting mpfr-4.1.1: .......... done [123amd64-default-job-06] | | `-- Extracting mpc-1.2.1: ......... done [123amd64-default-job-06] | `-- Extracting gcc12-12.2.0_5: .......... done [123amd64-default-job-06] `-- Extracting blas-3.11.0: ........ done [123amd64-default-job-06] `-- Installing lapack-3.11.0... [123amd64-default-job-06] `-- Extracting lapack-3.11.0: .......... done [123amd64-default-job-06] Extracting eigen-3.4.0_1: .......... done ===== Message from gcc12-12.2.0_5: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc12 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> chemicalfun-0.1.3_1 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - found ===> Returning to build of chemicalfun-0.1.3_1 ===> chemicalfun-0.1.3_1 depends on file: /usr/local/bin/python3.9 - found =========================================================================== =================================================== ===> chemicalfun-0.1.3_1 depends on shared library: libfmt.so - found (/usr/local/lib/libfmt.so) =========================================================================== =================================================== ===> Configuring for chemicalfun-0.1.3_1 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/science/chemicalfun/work/.build -- The CXX compiler identification is Clang 10.0.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found PythonInterp: /usr/local/bin/python3.9 (found suitable version "3.9.16", minimum required is "3.6") -- Found PythonLibs: /usr/local/lib/libpython3.9.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Performing Test HAS_FLTO_THIN -- Performing Test HAS_FLTO_THIN - Success -- Found pybind11: /usr/local/include (found version "2.10.1") -- Found pybind11 v2.10.1: /usr/local/include;/usr/local/include/python3.9 -- Found pybind11 v2.10.1: /usr/local/include;/usr/local/include/python3.9 -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: BOOST_PYTHON_SUFFIX CMAKE_COLOR_MAKEFILE CMAKE_C_COMPILER CMAKE_C_FLAGS CMAKE_C_FLAGS_DEBUG CMAKE_C_FLAGS_RELEASE CMAKE_VERBOSE_MAKEFILE FETCHCONTENT_FULLY_DISCONNECTED THREADS_HAVE_PTHREAD_ARG -- Build files have been written to: /wrkdirs/usr/ports/science/chemicalfun/work/.build =========================================================================== =================================================== ===> Building for chemicalfun-0.1.3_1 [ 6% 1/16] /usr/bin/c++ -DChemicalFun_EXPORTS -I/wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-0e0edc84688c/src -I/wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-0e0edc84688c/include -I/wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-0e0edc84688c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -DNDEBUG -fPIC -Wall -Wno-ignored-attributes -Wno-pedantic -Wno-variadic-macros -Wno-deprecated -std=gnu++17 -MD -MT src/CMakeFiles/ChemicalFun.dir/Common/Exception.cpp.o -MF src/CMakeFiles/ChemicalFun.dir/Common/Exception.cpp.o.d -o src/CMakeFiles/ChemicalFun.dir/Common/Exception.cpp.o -c /wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-0e0edc84688c/src/Common/Exception.cpp [ 12% 2/16] /usr/bin/c++ -DChemicalFun_EXPORTS -I/wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-0e0edc84688c/src -I/wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-0e0edc84688c/include -I/wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-0e0edc84688c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -DNDEBUG -fPIC -Wall -Wno-ignored-attributes -Wno-pedantic -Wno-variadic-macros -Wno-deprecated -std=gnu++17 -MD -MT src/CMakeFiles/ChemicalFun.dir/FormulaParser/ChemicalData.cpp.o -MF src/CMakeFiles/ChemicalFun.dir/FormulaParser/ChemicalData.cpp.o.d -o src/CMakeFiles/ChemicalFun.dir/FormulaParser/ChemicalData.cpp.o -c /wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-0e0edc84688c/src/FormulaParser/ChemicalData.cpp [ 18% 3/16] /usr/bin/c++ -DChemicalFun_EXPORTS -I/wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-0e0edc84688c/src -I/wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-0e0edc84688c/include -I/wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-0e0edc84688c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -DNDEBUG -fPIC -Wall -Wno-ignored-attributes -Wno-pedantic -Wno-variadic-macros -Wno-deprecated -std=gnu++17 -MD -MT src/CMakeFiles/ChemicalFun.dir/FormulaParser/ChemicalFormulaParser.cpp.o -MF src/CMakeFiles/ChemicalFun.dir/FormulaParser/ChemicalFormulaParser.cpp.o.d -o src/CMakeFiles/ChemicalFun.dir/FormulaParser/ChemicalFormulaParser.cpp.o -c /wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-0e0edc84688c/src/FormulaPar ser/ChemicalFormulaParser.cpp [ 25% 4/16] /usr/bin/c++ -DChemicalFun_EXPORTS -I/wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-0e0edc84688c/src -I/wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-0e0edc84688c/include -I/wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-0e0edc84688c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -DNDEBUG -fPIC -Wall -Wno-ignored-attributes -Wno-pedantic -Wno-variadic-macros -Wno-deprecated -std=gnu++17 -MD -MT src/CMakeFiles/ChemicalFun.dir/FormulaParser/MoietyParser.cpp.o -MF src/CMakeFiles/ChemicalFun.dir/FormulaParser/MoietyParser.cpp.o.d -o src/CMakeFiles/ChemicalFun.dir/FormulaParser/MoietyParser.cpp.o -c /wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-0e0edc84688c/src/FormulaParser/MoietyParser.cpp In file included from /wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-0e0edc84688c/src/FormulaParser/MoietyParser.cpp:21: /wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-0e0edc84688c/include/ChemicalFun/FormulaParser/MoietyParser.h:71:9: warning: private field 'number_sites' is not used [-Wunused-private-field] int number_sites; // number of sites in formula ^ 1 warning generated. [ 31% 5/16] /usr/bin/c++ -DChemicalFun_EXPORTS -I/wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-0e0edc84688c/src -I/wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-0e0edc84688c/include -I/wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-0e0edc84688c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -DNDEBUG -fPIC -Wall -Wno-ignored-attributes -Wno-pedantic -Wno-variadic-macros -Wno-deprecated -std=gnu++17 -MD -MT src/CMakeFiles/ChemicalFun.dir/ReactionsGenerator/CanonicalizerLeal16.cpp.o -MF src/CMakeFiles/ChemicalFun.dir/ReactionsGenerator/CanonicalizerLeal16.cpp.o.d -o src/CMakeFiles/ChemicalFun.dir/ReactionsGenerator/CanonicalizerLeal16.cpp.o -c /wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-0e0edc84688c/src/R eactionsGenerator/CanonicalizerLeal16.cpp FAILED: src/CMakeFiles/ChemicalFun.dir/ReactionsGenerator/CanonicalizerLeal16.cpp.o /usr/bin/c++ -DChemicalFun_EXPORTS -I/wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-0e0edc84688c/src -I/wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-0e0edc84688c/include -I/wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-0e0edc84688c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -DNDEBUG -fPIC -Wall -Wno-ignored-attributes -Wno-pedantic -Wno-variadic-macros -Wno-deprecated -std=gnu++17 -MD -MT src/CMakeFiles/ChemicalFun.dir/ReactionsGenerator/CanonicalizerLeal16.cpp.o -MF src/CMakeFiles/ChemicalFun.dir/ReactionsGenerator/CanonicalizerLeal16.cpp.o.d -o src/CMakeFiles/ChemicalFun.dir/ReactionsGenerator/CanonicalizerLeal16.cpp.o -c /wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-0e0edc84688c/src/ReactionsGene rator/CanonicalizerLeal16.cpp In file included from /wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-0e0edc84688c/src/ReactionsGenerator/CanonicalizerLeal16.cpp:20: In file included from /wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-0e0edc84688c/src/Common/Exception.h:26: In file included from /usr/local/include/spdlog/spdlog.h:12: In file included from /usr/local/include/spdlog/common.h:45: In file included from /usr/local/include/spdlog/fmt/fmt.h:31: /usr/local/include/fmt/core.h:1756:3: error: static_assert failed due to requirement 'formattable' "Cannot format an argument. To make type T formattable provide a formatter specialization: https://fmt.dev/latest/api.html#udt" static_assert( ^ /usr/local/include/fmt/core.h:1777:10: note: in instantiation of function template specialization 'fmt::v9::detail::make_value, Eigen::Matrix &>' requested here return make_value(val); ^ /usr/local/include/fmt/core.h:1899:23: note: in instantiation of function template specialization 'fmt::v9::detail::make_arg, fmt::v9::detail::type::custom_type, Eigen::Matrix &, 0>' requested here data_{detail::make_arg< ^ /usr/local/include/fmt/core.h:1918:10: note: in instantiation of function template specialization 'fmt::v9::format_arg_store, Eigen::Matrix >::format_arg_store &>' requested here return {FMT_FORWARD(args)...}; ^ /usr/local/include/spdlog/logger.h:374:59: note: in instantiation of function template specialization 'fmt::v9::make_format_args, Eigen::Matrix &>' requested here fmt::vformat_to(fmt::appender(buf), fmt, fmt::make_format_args(std::forward(args)...)); ^ /usr/local/include/spdlog/logger.h:90:9: note: in instantiation of function template specialization 'spdlog::logger::log_ &>' requested here log_(loc, lvl, fmt, std::forward(args)...); ^ /usr/local/include/spdlog/logger.h:96:9: note: in instantiation of function template specialization 'spdlog::logger::log &>' requested here log(source_loc{}, lvl, fmt, std::forward(args)...); ^ /usr/local/include/spdlog/logger.h:152:9: note: in instantiation of function template specialization 'spdlog::logger::log &>' requested here log(level::debug, fmt, std::forward(args)...); ^ /wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-0e0edc84688c/src/ReactionsGenerator/CanonicalizerLeal16.cpp:99:36: note: in instantiation of function template specialization 'spdlog::logger::debug &>' requested here ChemicalFun::chfun_logger->debug("leal16 \n {} ", R); ^ 1 error generated. ninja: build stopped: subcommand failed. *** Error code 1 Stop. make: stopped in /usr/ports/science/chemicalfun