From nobody Fri Dec 16 00:09:06 2022 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4NY8bQ6NK5z4jb6w for ; Fri, 16 Dec 2022 00:09:06 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4NY8bQ4gb1z4XCw for ; Fri, 16 Dec 2022 00:09:06 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1671149346; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc; bh=WxYkabqoh/8870eh/dxEWazTBaNOVTT1wBdEV/U9JDA=; b=vFhXlrI9ylBzkz7WGvhy3Z0atgnlyqFww8XuXK/yMWVZ0D6GPpgb8d6H3RfkiKspXlBAzq wYPVN/0KWnEEHmpTagQxKyoswfKYrKRSWaRcqiHrMVkhIGhTdBLgnMAv7eg2LIQwiunTOg 0Xa+tNnDp/kNcrQlLL2UGJmJj1GLClxQsIHauBcyYs1nbbrxJlwcOfY8SDtyFzFrJroGls 1Y3AJ+IOLRmiBUaLirp4edbXitJ6W+xZZ6nLHlRZ00nsY74je5kwG4jL0ff40KGjhtsfOt Jsk9sb7yUYiPgqFbrYUiA1+W/aEwUppasXRZcsGzEbc44zMS0b6LRMIn6f7tvQ== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1671149346; a=rsa-sha256; cv=none; b=MiucSYOukaMlAqIsq/p6bLTYruHlfZufEyHQgPx+EBvONFx7lKztNxH87DCG5Zkl1NLQeC l6Icy3+/62KHOt/vui1wm4AbW7Q+6bqV33NBwpOKxB2A3xUuaVbeelbSzt0a6R8fCWair8 SKQBMu+WMS3ueASjYrUGqZ2zrbPcwvpm5r0N5Rl+y0NDjJJzaQsGs39R0Fwy2ag+h7bgjA tHa6V9ks03L+aSzzibVk+or2t526bAmydQKCe2f25PYIQiPklqdsx+LNZITEqd/ylquC9g rbYXZFJO4rPvukyh0lFm2H3K+cATyDOQQ4fFlnRLnAClSuqCw9Y12jlsR41wlg== Received: from ampere3.nyi.freebsd.org (ampere3.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:26]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4NY8bQ3QLLzsP3 for ; Fri, 16 Dec 2022 00:09:06 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from ampere3.nyi.freebsd.org (localhost [127.0.0.1]) by ampere3.nyi.freebsd.org (8.16.1/8.16.1) with ESMTP id 2BG096Do015471 for ; Fri, 16 Dec 2022 00:09:06 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by ampere3.nyi.freebsd.org (8.16.1/8.16.1/Submit) id 2BG096lD015470; Fri, 16 Dec 2022 00:09:06 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Fri, 16 Dec 2022 00:09:06 GMT From: pkg-fallout@FreeBSD.org Message-Id: <202212160009.2BG096lD015470@ampere3.nyi.freebsd.org> To: pkg-fallout@FreeBSD.org Subject: [package - 131arm64-default][biology/phyml] Failed for phyml-3.3.20220408,1 in build X-ThisMailContainsUnwantedMimeParts: N List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: ports@FreeBSD.org Log URL: https://pkg-status.freebsd.org/ampere3/data/131arm64-default/a06965636b73/logs/phyml-3.3.20220408,1.log Build URL: https://pkg-status.freebsd.org/ampere3/build.html?mastername=131arm64-default&build=a06965636b73 Log: =>> Building biology/phyml build started at Fri Dec 16 00:08:45 UTC 2022 port directory: /usr/ports/biology/phyml package name: phyml-3.3.20220408,1 building for: FreeBSD 131arm64-default-job-09 13.1-RELEASE-p5 FreeBSD 13.1-RELEASE-p5 arm64 maintained by: ports@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-23-ga7f8d188 Host OSVERSION: 1400073 Jail OSVERSION: 1301000 Job Id: 09 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1301000 UNAME_v=FreeBSD 13.1-RELEASE-p5 UNAME_r=13.1-RELEASE-p5 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-23-ga7f8d188 MASTERMNT=/usr/local/poudriere/data/.m/131arm64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/131arm64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=131arm64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/131arm64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for phyml-3.3.20220408,1: DOCS=on: Build and/or install documentation EXAMPLES=on: Build and/or install examples ====> MPI (Message Passing Interface) support: you can only select none or one of them MPICH=off: Parallel processing support via MPICH 3 OPENMPI=off: Parallel processing support via Open MPI ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- ports@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --disable-beagle --disable-native --disable-mpi --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/biology/phyml/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/phyml/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/phyml/work/.cache HOME=/wrkdirs/usr/ports/biology/phyml/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/phyml/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/phyml/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh DEFAULT_AUTOCONF=2.71 CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/phyml/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/phyml/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/phyml/work/.cache HOME=/wrkdirs/usr/ports/biology/phyml/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/phyml/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/phyml/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DEFAULT_AUTOCONF=2.71 PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_ DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" PORTEXAMPLES="" OSREL=13.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/phyml" EXAMPLESDIR="share/examples/phyml" DATADIR="share/phyml" WWWDIR="www/phyml" ETCDIR="etc/phyml" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/phyml DOCSDIR=/usr/local/share/doc/phyml EXAMPLESDIR=/usr/local/share/examples/phyml WWWDIR=/usr/local/www/phyml ETCDIR=/usr/local/etc/phyml --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: aarch64-unknown-freebsd13.1 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: aarch64-unknown-freebsd13.1 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_53255a77=yes CC_OUTPUT_921dbbb2_911cfe02=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes CC_OUTPUT_921dbbb2_af59ad06=yes CC_OUTPUT_921dbbb2_a15f3fcf=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: aarch64-unknown-freebsd13.1 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=aarch64 OPSYS=FreeBSD _OSRELEASE=13.1-RELEASE-p5 OSREL=13.1 OSVERSION=1301000 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 1048576 stack size (kbytes, -s) 1048576 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> NOTICE: The phyml port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> License GPLv3 accepted by the user =========================================================================== =================================================== ===> phyml-3.3.20220408,1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.19.0.pkg [131arm64-default-job-09] Installing pkg-1.19.0... [131arm64-default-job-09] Extracting pkg-1.19.0: .......... done ===> phyml-3.3.20220408,1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of phyml-3.3.20220408,1 =========================================================================== =================================================== =========================================================================== =================================================== ===> NOTICE: The phyml port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by phyml-3.3.20220408,1 for building =========================================================================== =================================================== ===> NOTICE: The phyml port currently does not have a maintainer. As a result, it is =================================================== ===> Configuring for phyml-3.3.20220408,1 configure.ac:21: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:21: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.ac:21: the top level configure.ac:42: warning: The macro `AC_FUNC_SETVBUF_REVERSED' is obsolete. Remove it and all references to SETVBUF_REVERSED. ./lib/autoconf/functions.m4:1766: AC_FUNC_SETVBUF_REVERSED is expanded from... configure.ac:42: the top level configure.ac:14: installing './compile' configure.ac:12: installing './config.guess' configure.ac:12: installing './config.sub' configure.ac:5: installing './install-sh' configure.ac:5: installing './missing' src/Makefile.am: installing './depcomp' configure: WARNING: unrecognized options: --disable-beagle, --disable-mpi configure: loading site script /usr/ports/Templates/config.site checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... aarch64-portbld-freebsd13.1 checking host system type... aarch64-portbld-freebsd13.1 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether cc accepts -g... yes checking for cc option to enable C11 features... none needed checking whether cc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of cc... gcc3 checking for log in -lm... yes checking for stdio.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for strings.h... (cached) yes checking for sys/stat.h... (cached) yes checking for sys/types.h... (cached) yes checking for unistd.h... (cached) yes checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for float.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... (cached) yes checking for pdflatex... no checking for latex... no configure: WARNING: Documentation will not be built! checking for GNU libc compatible malloc... (cached) yes checking for GNU libc compatible realloc... yes checking for vprintf... (cached) yes checking for floor... yes checking for pow... yes checking for rint... yes checking for sqrt... yes checking for strchr... (cached) yes checking for strstr... (cached) yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating doc/Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-beagle, --disable-mpi =========================================================================== =================================================== ===> Building for phyml-3.3.20220408,1 --- all --- /usr/bin/make all-recursive --- all-recursive --- Making all in src --- intro --- --- main.o --- --- intro --- .: Building [phyml]. Version 3.3.20220408 :. --- main.o --- cc -I. -I.. -std=c99 -O3 -fomit-frame-pointer -funroll-loops -msse3 -Wall -Winline -finline -MT main.o -MD -MP -MF .deps/main.Tpo -c -o main.o main.c --- utilities.o --- cc -I. -I.. -std=c99 -O3 -fomit-frame-pointer -funroll-loops -msse3 -Wall -Winline -finline -MT utilities.o -MD -MP -MF .deps/utilities.Tpo -c -o utilities.o utilities.c --- main.o --- cc: warning: argument unused during compilation: '-msse3' [-Wunused-command-line-argument] --- utilities.o --- cc: warning: argument unused during compilation: '-msse3' [-Wunused-command-line-argument] --- main.o --- mv -f .deps/main.Tpo .deps/main.Po --- optimiz.o --- cc -I. -I.. -std=c99 -O3 -fomit-frame-pointer -funroll-loops -msse3 -Wall -Winline -finline -MT optimiz.o -MD -MP -MF .deps/optimiz.Tpo -c -o optimiz.o optimiz.c cc: warning: argument unused during compilation: '-msse3' [-Wunused-command-line-argument] --- utilities.o --- utilities.c:3212:18: error: no member named '_tPij1' in 'struct __Tree' boot_tree->_tPij1 = tree->_tPij1; ~~~~~~~~~ ^ utilities.c:3212:47: error: no member named '_tPij1' in 'struct __Tree' boot_tree->_tPij1 = tree->_tPij1; ~~~~ ^ utilities.c:3213:18: error: no member named '_tPij2' in 'struct __Tree' boot_tree->_tPij2 = tree->_tPij2; ~~~~~~~~~ ^ utilities.c:3213:47: error: no member named '_tPij2' in 'struct __Tree' boot_tree->_tPij2 = tree->_tPij2; ~~~~ ^ utilities.c:3214:18: error: no member named '_pmat1plk1' in 'struct __Tree' boot_tree->_pmat1plk1 = tree->_pmat1plk1; ~~~~~~~~~ ^ utilities.c:3214:47: error: no member named '_pmat1plk1' in 'struct __Tree' boot_tree->_pmat1plk1 = tree->_pmat1plk1; ~~~~ ^ utilities.c:3215:18: error: no member named '_pmat2plk2' in 'struct __Tree' boot_tree->_pmat2plk2 = tree->_pmat2plk2; ~~~~~~~~~ ^ utilities.c:3215:47: error: no member named '_pmat2plk2' in 'struct __Tree' boot_tree->_pmat2plk2 = tree->_pmat2plk2; ~~~~ ^ utilities.c:3216:18: error: no member named '_plk0' in 'struct __Tree' boot_tree->_plk0 = tree->_plk0; ~~~~~~~~~ ^ utilities.c:3216:47: error: no member named '_plk0' in 'struct __Tree' boot_tree->_plk0 = tree->_plk0; ~~~~ ^ utilities.c:3219:18: error: no member named '_l_ev' in 'struct __Tree'; did you mean 'l_ev'? boot_tree->_l_ev = tree->_l_ev; ^~~~~ l_ev ./utilities.h:779:42: note: 'l_ev' declared here phydbl *p_lk_left_pi,*l_ev; ^ utilities.c:3219:47: error: no member named '_l_ev' in 'struct __Tree'; did you mean 'l_ev'? boot_tree->_l_ev = tree->_l_ev; ^~~~~ l_ev ./utilities.h:779:42: note: 'l_ev' declared here phydbl *p_lk_left_pi,*l_ev; ^ utilities.c:3220:18: error: no member named '_r_ev' in 'struct __Tree' boot_tree->_r_ev = tree->_r_ev; ~~~~~~~~~ ^ utilities.c:3220:47: error: no member named '_r_ev' in 'struct __Tree' boot_tree->_r_ev = tree->_r_ev; ~~~~ ^ utilities.c:3221:18: error: no member named '_prod_left' in 'struct __Tree' boot_tree->_prod_left = tree->_prod_left; ~~~~~~~~~ ^ utilities.c:3221:47: error: no member named '_prod_left' in 'struct __Tree' boot_tree->_prod_left = tree->_prod_left; ~~~~ ^ utilities.c:3222:18: error: no member named '_prod_rght' in 'struct __Tree' boot_tree->_prod_rght = tree->_prod_rght; ~~~~~~~~~ ^ utilities.c:3222:47: error: no member named '_prod_rght' in 'struct __Tree' boot_tree->_prod_rght = tree->_prod_rght; ~~~~ ^ utilities.c:6546:22: warning: variable 'sd' set but not used [-Wunused-but-set-variable] phydbl *delta,mean,sd,obs_stat,threshold; ^ utilities.c:8913:26: warning: result of comparison of constant -1 with expression of type 'char' is always true [-Wtautological-constant-out-of-range-compare] while((c != '(') && (c != EOF)); ~ ^ ~~~ utilities.c:8915:7: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare] if(c==EOF) ~^ ~~~ utilities.c:8927:11: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare] if(c==EOF) break; ~^ ~~~ utilities.c:8934:11: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare] if(c==EOF || c==';') break; ~^ ~~~ utilities.c:9215:12: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare] if(c == EOF) break; ~ ^ ~~~ 6 warnings and 18 errors generated. *** [utilities.o] Error code 1 make[3]: stopped in /wrkdirs/usr/ports/biology/phyml/work/phyml-3.3.20220408/src --- optimiz.o --- mv -f .deps/optimiz.Tpo .deps/optimiz.Po 1 error make[3]: stopped in /wrkdirs/usr/ports/biology/phyml/work/phyml-3.3.20220408/src make[2]: stopped in /wrkdirs/usr/ports/biology/phyml/work/phyml-3.3.20220408 make[1]: stopped in /wrkdirs/usr/ports/biology/phyml/work/phyml-3.3.20220408 ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/biology/phyml