From nobody Wed Aug 31 09:52:45 2022 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4MHfcG2GSbz4Zr5W for ; Wed, 31 Aug 2022 09:52:46 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4MHfcF5Tt7z3yZY; Wed, 31 Aug 2022 09:52:45 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy17.nyi.freebsd.org (beefy17.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:20]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4MHfcF4YLHz151v; Wed, 31 Aug 2022 09:52:45 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy17.nyi.freebsd.org (localhost [127.0.0.1]) by beefy17.nyi.freebsd.org (8.16.1/8.16.1) with ESMTP id 27V9qjil038784; Wed, 31 Aug 2022 09:52:45 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by beefy17.nyi.freebsd.org (8.16.1/8.16.1/Submit) id 27V9qjGf038783; Wed, 31 Aug 2022 09:52:45 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Wed, 31 Aug 2022 09:52:45 GMT From: pkg-fallout@FreeBSD.org Message-Id: <202208310952.27V9qjGf038783@beefy17.nyi.freebsd.org> To: yuri@FreeBSD.org Subject: [package - main-i386-default][biology/jalview] Failed for jalview-2.11.1.4 in build Cc: pkg-fallout@FreeBSD.org ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1661939565; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc; bh=i86p7ZQm9r13dTOj+rpxOXWfRJAXqwTQOEG3ZjH7vh8=; b=sgnOwEoNS+WNyLhv4bqdRd1KqE5h2vUkFsFa+rRO37X6+mT9mv8j+wZ5irZm1nsPQ494XC ioiTFUkmdvmx4brmvwrbT1BQXDcDpBdCGoMNenmpjocavGhTNDpVAhQT3amX/hodQnQ1nN GIGiFvOVhX5Bh2qNSaMEXUSu1XQspDSGTRGhtyR52No4aOoATmTv2IOUCvcbdBuoVwm36m s2UOrxLgMNR8lb02SAsM3LGEghDDOC8t2dACjQu99XdBZT72Ec6Cqd6qoEfdOnZJWER7go gRTKWRf0J4sGjCjq7ZUSYdlxSXLRBj4SCIKWGiyNleLr05jA/8EdADKn3AsbSw== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1661939565; a=rsa-sha256; cv=none; b=c6xOK6ZCn0O4vI2toKlBUpEf/SxLeLtBbCuBn3d44YX0sSu8Ev3kpXhovCl64fMcfPXgSO YwPlfWMmrBbigg8Z3A4fvcb5CI/lknLi9t+J55qRJ0Kt8h3h8GqWvd1oqsN9nqHYw+kaNK 94U3AVVbneMKLAzVYYrSsZN3cEznf1bsnCYcYKxxQlKxElLTLX2oYhQJMrsulyjSem7ICW EWtUS2PpPugY+7OMEOEQHHJ7I3QZZivmHCVcP0Dg3C7PEmpDOCa1td3QsnHBcURciV2tG6 wgsQJJaWFI/YZDmnBMPG4Y6FgekzK8bGCJMgF+8o1vNESHIQ1mn5oZi1NtBX8g== ARC-Authentication-Results: i=1; mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: http://beefy17.nyi.freebsd.org/data/main-i386-default/p70f144086a03_sbb31aee26b/logs/jalview-2.11.1.4.log Build URL: http://beefy17.nyi.freebsd.org/build.html?mastername=main-i386-default&build=p70f144086a03_sbb31aee26b Log: =>> Building biology/jalview build started at Wed Aug 31 09:52:30 UTC 2022 port directory: /usr/ports/biology/jalview package name: jalview-2.11.1.4 building for: FreeBSD main-i386-default-job-02 14.0-CURRENT FreeBSD 14.0-CURRENT 1400066 i386 maintained by: yuri@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-21-g883afb07 Host OSVERSION: 1400063 Jail OSVERSION: 1400066 Job Id: 02 !!! Jail is newer than host. (Jail: 1400066, Host: 1400063) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/sh UNAME_p=i386 UNAME_m=i386 OSVERSION=1400066 UNAME_v=FreeBSD 14.0-CURRENT 1400066 UNAME_r=14.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-21-g883afb07 MASTERMNT=/usr/local/poudriere/data/.m/main-i386-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/main-i386-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=main-i386-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/main-i386-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/jalview/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/jalview/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/jalview/work/.cache HOME=/wrkdirs/usr/ports/biology/jalview/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/jalview/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/jalview/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/jalview/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/jalview/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/jalview/work/.cache HOME=/wrkdirs/usr/ports/biology/jalview/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/jalview/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/jalview/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_S CRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- JAVASHAREDIR="share/java" JAVAJARDIR="share/java/classes" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/jalview" EXAMPLESDIR="share/examples/jalview" DATADIR="share/java/jalview" WWWDIR="www/jalview" ETCDIR="etc/jalview" --End PLIST_SUB-- --SUB_LIST-- JAVA=/usr/local/openjdk11/bin/java JAVASHAREDIR="/usr/local/share/java" JAVAJARDIR="/usr/local/share/java/classes" JAVALIBDIR="/usr/local/share/java/classes" JAVA_VERSION="11" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/java/jalview DOCSDIR=/usr/local/share/doc/jalview EXAMPLESDIR=/usr/local/share/examples/jalview WWWDIR=/usr/local/www/jalview ETCDIR=/usr/local/etc/jalview --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc12386ae247c) Target: i386-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc12386ae247c) Target: i386-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-m" "elf_i386_fbsd" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc12386ae247c) Target: i386-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=i386 OPSYS=FreeBSD _OSRELEASE=14.0-CURRENT OSREL=14.0 OSVERSION=1400066 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License GPLv3 accepted by the user =========================================================================== =================================================== ===> jalview-2.11.1.4 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.18.4.pkg [main-i386-default-job-02] Installing pkg-1.18.4... [main-i386-default-job-02] Extracting pkg-1.18.4: .......... done ===> jalview-2.11.1.4 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of jalview-2.11.1.4 =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by jalview-2.11.1.4 for building =========================================================================== =================================================== ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by jalview-2.11.1.4 for building => SHA256 Checksum OK for jalview_2_11_1_4.tar.gz. => SHA256 Checksum OK for jalview-2.11.1.4-deps.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by jalview-2.11.1.4 for building ===> Extracting for jalview-2.11.1.4 => SHA256 Checksum OK for jalview_2_11_1_4.tar.gz. => SHA256 Checksum OK for jalview-2.11.1.4-deps.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for jalview-2.11.1.4 =========================================================================== =================================================== ===> jalview-2.11.1.4 depends on executable: gradle - not found ===> Installing existing package /packages/All/gradle6-6.9.pkg [main-i386-default-job-02] Installing gradle6-6.9... ===== Message from alsa-lib-1.2.2_1: -- ===> NOTICE: The alsa-lib port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===== Message from freetype2-2.12.1_2: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). ===== Message from dejavu-2.37_1: -- Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. ===== Message from libinotify-20211018: -- You might want to consider increasing the kern.maxfiles tunable if you plan to use this library for applications that need to monitor activity of a lot of files. ===== Message from openjdk8-8.342.07.1: -- This OpenJDK implementation requires fdescfs(5) mounted on /dev/fd and procfs(5) mounted on /proc. If you have not done it yet, please do the following: mount -t fdescfs fdesc /dev/fd mount -t procfs proc /proc To make it permanent, you need the following lines in /etc/fstab: fdesc /dev/fd fdescfs rw 0 0 proc /proc procfs rw 0 0 ===> jalview-2.11.1.4 depends on executable: gradle - found ===> Returning to build of jalview-2.11.1.4 ===> jalview-2.11.1.4 depends on file: /usr/local/openjdk11/bin/java - not found ===> Installing existing package /packages/All/openjdk11-11.0.16+8.1.pkg [main-i386-default-job-02] Installing openjdk11-11.0.16+8.1... [main-i386-default-job-02] `-- Installing jpeg-turbo-2.1.4... [main-i386-default-job-02] `-- Extracting jpeg-turbo-2.1.4: .......... done [main-i386-default-job-02] `-- Installing lcms2-2.13.1... [main-i386-default-job-02] | `-- Installing tiff-4.4.0... [main-i386-default-job-02] | | `-- Installing jbigkit-2.1_1... [main-i386-default-job-02] | | `-- Extracting jbigkit-2.1_1: .......... done [main-i386-default-job-02] | | `-- Installing libdeflate-1.13... [main-i386-default-job-02] | | `-- Extracting libdeflate-1.13: .......... done [main-i386-default-job-02] | | `-- Installing zstd-1.5.2_1... [main-i386-default-job-02] | | `-- Installing liblz4-1.9.4,1... [main-i386-default-job-02] | | `-- Extracting liblz4-1.9.4,1: .......... done [main-i386-default-job-02] | | `-- Extracting zstd-1.5.2_1: .......... done [main-i386-default-job-02] | `-- Extracting tiff-4.4.0: .......... done [main-i386-default-job-02] `-- Extracting lcms2-2.13.1: .......... done [main-i386-default-job-02] `-- Installing libXrandr-1.5.2... [main-i386-default-job-02] `-- Extracting libXrandr-1.5.2: .......... done [main-i386-default-job-02] `-- Installing xorg-fonts-truetype-7.7_1... [main-i386-default-job-02] | `-- Installing encodings-1.0.5,1... [main-i386-default-job-02] | `-- Extracting encodings-1.0.5,1: .......... done [main-i386-default-job-02] | `-- Installing font-bh-ttf-1.0.3_4... [main-i386-default-job-02] | `-- Extracting font-bh-ttf-1.0.3_4: .......... done [main-i386-default-job-02] | `-- Installing font-misc-ethiopic-1.0.4... [main-i386-default-job-02] | `-- Extracting font-misc-ethiopic-1.0.4: ...... done [main-i386-default-job-02] | `-- Installing font-misc-meltho-1.0.3_4... [main-i386-default-job-02] | `-- Extracting font-misc-meltho-1.0.3_4: .......... done [main-i386-default-job-02] Extracting openjdk11-11.0.16+8.1: .......... done Running fc-cache to build fontconfig cache... ===== Message from openjdk11-11.0.16+8.1: -- This OpenJDK implementation requires fdescfs(5) mounted on /dev/fd and procfs(5) mounted on /proc. If you have not done it yet, please do the following: mount -t fdescfs fdesc /dev/fd mount -t procfs proc /proc To make it permanent, you need the following lines in /etc/fstab: fdesc /dev/fd fdescfs rw 0 0 proc /proc procfs rw 0 0 ===> jalview-2.11.1.4 depends on file: /usr/local/openjdk11/bin/java - found ===> Returning to build of jalview-2.11.1.4 =========================================================================== =================================================== =========================================================================== =================================================== ===> Configuring for jalview-2.11.1.4 =========================================================================== =================================================== ===> Building for jalview-2.11.1.4 Welcome to Gradle 6.9! Here are the highlights of this release: - This is a small backport release. - Java 16 can be used to compile when used with Java toolchains - Dynamic versions can be used within plugin declarations - Native support for Apple Silicon processors For more details see https://docs.gradle.org/6.9/release-notes.html Starting a Gradle Daemon (subsequent builds will be faster) The message received from the daemon indicates that the daemon has disappeared. Build request sent: Build{id=e6fa8258-26fd-4378-957c-bbcb97263c70, currentDir=/wrkdirs/usr/ports/biology/jalview/work/jalview} Attempting to read last messages from the daemon log... Daemon pid: 36787 log file: /wrkdirs/usr/ports/biology/jalview/work/gradle-jalview/daemon/6.9/daemon-36787.out.log ----- Last 20 lines from daemon log file - daemon-36787.out.log ----- 2022-08-31T09:52:40.635+0000 [DEBUG] [org.gradle.cache.internal.DefaultFileLockManager] Lock acquired on daemon addresses registry. 2022-08-31T09:52:40.636+0000 [DEBUG] [org.gradle.cache.internal.DefaultFileLockManager] Releasing lock on daemon addresses registry. 2022-08-31T09:52:40.636+0000 [DEBUG] [org.gradle.launcher.daemon.server.DaemonStateCoordinator] resetting idle timer 2022-08-31T09:52:40.637+0000 [DEBUG] [org.gradle.launcher.daemon.server.DaemonStateCoordinator] daemon is running. Sleeping until state changes. 2022-08-31T09:52:40.638+0000 [INFO] [org.gradle.launcher.daemon.server.exec.StartBuildOrRespondWithBusy] Daemon is about to start building Build{id=e6fa8258-26fd-4378-957c-bbcb97263c70, currentDir=/wrkdirs/usr/ports/biology/jalview/work/jalview}. Dispatching build started information... 2022-08-31T09:52:40.638+0000 [DEBUG] [org.gradle.launcher.daemon.server.SynchronizedDispatchConnection] thread 20: dispatching org.gradle.launcher.daemon.protocol.BuildStarted@19f6c48 2022-08-31T09:52:40.640+0000 [DEBUG] [org.gradle.launcher.daemon.server.exec.EstablishBuildEnvironment] Configuring env variables: [P_PORTS_FEATURES, PATH, MASTERMNT, CXX, CPP, META_MODE, MASTERNAME, BSD_INSTALL_PROGRAM, SAVED_TERM, UNAME_m, LDFLAGS, UNAME_r, XDG_CACHE_HOME, UNAME_p, NO_LINT, STATUS, SCRIPTPREFIX, UNAME_v, BSD_INSTALL_MAN, POUDRIERE_BUILD_TYPE, MAIL, OSREL, NO_DEPENDS, MM_CHARSET, PWD, GID, SHELL, CPPFLAGS, PKG_CONFIG_LIBDIR, _OSRELEASE, BSD_INSTALL_LIB, OLDPWD, LIBS, TMPDIR, UID, OSVERSION, LC_ALL, PREFIX, SCRIPTPATH, MK_DEBUG_FILES, MANPREFIX, BLOCKSIZE, MAKEFLAGS, ARCH, LANG, OPSYS, LOCALBASE, CFLAGS, MK_KERNEL_SYMBOLS, BSD_INSTALL_SCRIPT, CC, XDG_DATA_HOME, POUDRIERE_VERSION, BSD_INSTALL_DATA, USER, XDG_CONFIG_HOME, NO_PIE, MAKELEVEL, LIBEXECPREFIX, POUDRIEREPATH, PACKAGE_BUILDING, HOME, CXXFLAGS] 2022-08-31T09:52:40.641+0000 [WARN] [org.gradle.launcher.daemon.server.exec.EstablishBuildEnvironment] Warning: Unable able to set daemon's environment variables to match the client because: There is no native integration with this operating environment. If the daemon was started with a significantly different environment from the client, and your build relies on environment variables, you may experience unexpected behavior. 2022-08-31T09:52:40.642+0000 [DEBUG] [org.gradle.launcher.daemon.server.SynchronizedDispatchConnection] thread 18: received class org.gradle.launcher.daemon.protocol.CloseInput 2022-08-31T09:52:40.642+0000 [DEBUG] [org.gradle.launcher.daemon.server.DefaultDaemonConnection] thread 18: Received IO message from client: org.gradle.launcher.daemon.protocol.CloseInput@1dd9a93 2022-08-31T09:52:40.643+0000 [DEBUG] [org.gradle.launcher.daemon.server.exec.LogToClient] About to start relaying all logs to the client via the connection. 2022-08-31T09:52:40.643+0000 [INFO] [org.gradle.launcher.daemon.server.exec.LogToClient] The client will now receive all logging from the daemon (pid: 36787). The daemon log file: /wrkdirs/usr/ports/biology/jalview/work/gradle-jalview/daemon/6.9/daemon-36787.out.log 2022-08-31T09:52:40.646+0000 [INFO] [org.gradle.launcher.daemon.server.exec.LogAndCheckHealth] Starting build in new daemon [memory: 512 MiB] 2022-08-31T09:52:40.648+0000 [INFO] [org.gradle.launcher.daemon.server.exec.ForwardClientInput] Closing daemon's stdin at end of input. 2022-08-31T09:52:40.648+0000 [INFO] [org.gradle.launcher.daemon.server.exec.ForwardClientInput] The daemon will no longer process any standard input. 2022-08-31T09:52:40.653+0000 [DEBUG] [org.gradle.launcher.daemon.server.exec.ExecuteBuild] The daemon has started executing the build. 2022-08-31T09:52:40.654+0000 [DEBUG] [org.gradle.launcher.daemon.server.exec.ExecuteBuild] Executing build with daemon context: DefaultDaemonContext[uid=69748add-285b-4398-8065-6c896b232cc0,javaHome=/usr/local/openjdk11,daemonRegistryDir=/wrkdirs/usr/ports/biology/jalview/work/gradle-jalview/daemon,pid=36787,idleTimeout=10800000,priority=NORMAL,daemonOpts=--add-opens,java.base/java.util=ALL-UNNAMED,--add-opens,java.base/java.lang=ALL-UNNAMED,--add-opens,java.base/java.lang.invoke=ALL-UNNAMED,--add-opens,java.prefs/java.util.prefs=ALL-UNNAMED,-XX:MaxMetaspaceSize=256m,-XX:+HeapDumpOnOutOfMemoryError,-Xms256m,-Xmx512m,-Dfile.encoding=UTF-8,-Duser.country=US,-Duser.language=en,-Duser.variant] ----- End of the daemon log ----- JVM crash log found: file:///wrkdirs/usr/ports/biology/jalview/work/gradle-jalview/daemon/6.9/hs_err_pid36787.log FAILURE: Build failed with an exception. * What went wrong: Gradle build daemon disappeared unexpectedly (it may have been killed or may have crashed) * Try: Run with --stacktrace option to get the stack trace. Run with --info or --debug option to get more log output. Run with --scan to get full insights. * Get more help at https://help.gradle.org *** Error code 1 Stop. make: stopped in /usr/ports/biology/jalview