[package - 123i386-default][biology/kmcp] Failed for kmcp-0.8.2 in build

Go to: [ bottom of page ] [ top of archives ] [ this month ]
From: <pkg-fallout_at_FreeBSD.org>
Date: Tue, 16 Aug 2022 08:55:22 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri@FreeBSD.org
Log URL:        http://beefy5.nyi.freebsd.org/data/123i386-default/7a8e92af5afc/logs/kmcp-0.8.2.log
Build URL:      http://beefy5.nyi.freebsd.org/build.html?mastername=123i386-default&build=7a8e92af5afc
Log:

=>> Building biology/kmcp
build started at Tue Aug 16 08:54:56 UTC 2022
port directory: /usr/ports/biology/kmcp
package name: kmcp-0.8.2
building for: FreeBSD 123i386-default-job-12 12.3-RELEASE-p6 FreeBSD 12.3-RELEASE-p6 i386
maintained by: yuri@FreeBSD.org
Makefile ident: 
Poudriere version: 3.2.8-21-g883afb07
Host OSVERSION: 1400063
Jail OSVERSION: 1203000
Job Id: 12

---Begin Environment---
SHELL=/bin/csh
UNAME_p=i386
UNAME_m=i386
OSVERSION=1203000
UNAME_v=FreeBSD 12.3-RELEASE-p6
UNAME_r=12.3-RELEASE-p6
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-21-g883afb07
MASTERMNT=/usr/local/poudriere/data/.m/123i386-default/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/123i386-default/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=123i386-default
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/123i386-default/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/kmcp/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/kmcp/work  XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/kmcp/work/.cache  HOME=/wrkdirs/usr/ports/biology/kmcp/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/kmcp/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/kmcp/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/kmcp/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/kmcp/work  XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/kmcp/work/.cache  HOME=/wrkdirs/usr/ports/biology/kmcp/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/kmcp/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/kmcp/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local  LOCALBASE=/usr/local  CC="cc" CFLAGS="-O2 -pipe  -fstack-protector-strong -fno-strict-aliasing "  CPP="cpp" CPPFLAGS=""  LDFLAGS=" -fstack-protector-strong " LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing  "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m
  0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=12.3 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/kmcp"  EXAMPLESDIR="share/examples/kmcp"  DATADIR="share/kmcp"  WWWDIR="www/kmcp"  ETCDIR="etc/kmcp"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/kmcp DOCSDIR=/usr/local/share/doc/kmcp EXAMPLESDIR=/usr/local/share/examples/kmcp  WWWDIR=/usr/local/www/kmcp ETCDIR=/usr/local/etc/kmcp
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=i386
MACHINE_ARCH=i386
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=FreeBSD clang version 10.0.1 (git@github.com:llvm/llvm-project.git llvmorg-10.0.1-0-gef32c611aa2) Target: i386-unknown-freebsd12.3 Thread model: posix InstalledDir: /usr/bin
_ALTCCVERSION_921dbbb2=none
_CXXINTERNAL_acaad9ca=FreeBSD clang version 10.0.1 (git@github.com:llvm/llvm-project.git llvmorg-10.0.1-0-gef32c611aa2) Target: i386-unknown-freebsd12.3 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-m" "elf_i386_fbsd" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=yes
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=yes
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=yes
CC_OUTPUT_921dbbb2_f00456e5=yes
CC_OUTPUT_921dbbb2_65ad290d=yes
CC_OUTPUT_921dbbb2_f2776b26=yes
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=yes
CC_OUTPUT_921dbbb2_160933ec=yes
CC_OUTPUT_921dbbb2_fb62803b=yes
_OBJC_CCVERSION_921dbbb2=FreeBSD clang version 10.0.1 (git@github.com:llvm/llvm-project.git llvmorg-10.0.1-0-gef32c611aa2) Target: i386-unknown-freebsd12.3 Thread model: posix InstalledDir: /usr/bin
_OBJC_ALTCCVERSION_921dbbb2=none
ARCH=i386
OPSYS=FreeBSD
_OSRELEASE=12.3-RELEASE-p6
OSREL=12.3
OSVERSION=1203000
PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=524288
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  524288
stack size              (kbytes, -s)  65536
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   kmcp-0.8.2 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.18.4.pkg
[123i386-default-job-12] Installing pkg-1.18.4...
[123i386-default-job-12] Extracting pkg-1.18.4: .......... done
===>   kmcp-0.8.2 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of kmcp-0.8.2
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License MIT accepted by the user
===> Fetching all distfiles required by kmcp-0.8.2 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License MIT accepted by the user
===> Fetching all distfiles required by kmcp-0.8.2 for building
=> SHA256 Checksum OK for shenwei356-kmcp-v0.8.2_GH0.tar.gz.
=> SHA256 Checksum OK for VividCortex-ewma-v1.1.1_GH0.tar.gz.
=> SHA256 Checksum OK for acarl005-stripansi-5a71ef0e047d_GH0.tar.gz.
=> SHA256 Checksum OK for clausecker-pospop-677120eb417c_GH0.tar.gz.
=> SHA256 Checksum OK for dustin-go-humanize-v1.0.0_GH0.tar.gz.
=> SHA256 Checksum OK for edsrzf-mmap-go-v1.1.0_GH0.tar.gz.
=> SHA256 Checksum OK for go-yaml-yaml-v2.4.0_GH0.tar.gz.
=> SHA256 Checksum OK for golang-sys-1d35b9e2eb4e_GH0.tar.gz.
=> SHA256 Checksum OK for grailbio-base-v0.0.10_GH0.tar.gz.
=> SHA256 Checksum OK for iafan-cwalk-586a8832a711_GH0.tar.gz.
=> SHA256 Checksum OK for inconshreveable-mousetrap-v1.0.0_GH0.tar.gz.
=> SHA256 Checksum OK for klauspost-compress-v1.15.0_GH0.tar.gz.
=> SHA256 Checksum OK for klauspost-pgzip-v1.2.5_GH0.tar.gz.
=> SHA256 Checksum OK for mattn-go-colorable-v0.1.12_GH0.tar.gz.
=> SHA256 Checksum OK for mattn-go-isatty-v0.0.14_GH0.tar.gz.
=> SHA256 Checksum OK for mattn-go-runewidth-v0.0.13_GH0.tar.gz.
=> SHA256 Checksum OK for mitchellh-go-homedir-v1.1.0_GH0.tar.gz.
=> SHA256 Checksum OK for pkg-errors-v0.9.1_GH0.tar.gz.
=> SHA256 Checksum OK for rivo-uniseg-v0.2.0_GH0.tar.gz.
=> SHA256 Checksum OK for shenwei356-bio-v0.7.0_GH0.tar.gz.
=> SHA256 Checksum OK for shenwei356-breader-v0.3.1_GH0.tar.gz.
=> SHA256 Checksum OK for shenwei356-go-logging-c6b9702d88ba_GH0.tar.gz.
=> SHA256 Checksum OK for shenwei356-kmers-v0.1.0_GH0.tar.gz.
=> SHA256 Checksum OK for shenwei356-natsort-600d539c017d_GH0.tar.gz.
=> SHA256 Checksum OK for shenwei356-pand-v0.0.5_GH0.tar.gz.
=> SHA256 Checksum OK for shenwei356-unik-v5.0.1_GH0.tar.gz.
=> SHA256 Checksum OK for shenwei356-util-v0.5.0_GH0.tar.gz.
=> SHA256 Checksum OK for shenwei356-xopen-v0.2.1_GH0.tar.gz.
=> SHA256 Checksum OK for spf13-cobra-v1.4.0_GH0.tar.gz.
=> SHA256 Checksum OK for spf13-pflag-v1.0.5_GH0.tar.gz.
=> SHA256 Checksum OK for tatsushid-go-prettytable-ed2d14c29939_GH0.tar.gz.
=> SHA256 Checksum OK for twotwotwo-sorts-bf5c1f2b8553_GH0.tar.gz.
<snip>
internal/unsafeheader
crypto/internal/subtle
github.com/ulikunitz/xz/internal/hash
math/bits
unicode/utf8
github.com/shenwei356/pand
internal/goarch
internal/nettrace
container/list
crypto/subtle
encoding
internal/itoa
internal/goexperiment
runtime/internal/atomic
# github.com/shenwei356/pand
vendor/github.com/shenwei356/pand/dispatch.go:19:20: undefined: andInplaceFuncs
vendor/github.com/shenwei356/pand/dispatch.go:29:20: undefined: andFuncs
golang.org/x/sys/internal/unsafeheader
github.com/VividCortex/ewma
vendor/golang.org/x/crypto/cryptobyte/asn1
vendor/golang.org/x/crypto/internal/subtle
unicode/utf16
internal/goos
sync/atomic
unicode
internal/cpu
runtime/internal/math
internal/abi
crypto/internal/boring/sig
runtime/internal/sys
github.com/rivo/uniseg
math
internal/bytealg
runtime
github.com/shenwei356/util/math
github.com/klauspost/compress
github.com/vbauerster/mpb/v5/internal
internal/reflectlite
sync
internal/singleflight
internal/testlog
math/rand
runtime/cgo
errors
sort
internal/oserror
path
io
vendor/golang.org/x/net/dns/dnsmessage
strconv
crypto/internal/nistec/fiat
syscall
container/heap
hash
bytes
crypto/internal/randutil
strings
hash/crc64
hash/crc32
vendor/golang.org/x/text/transform
github.com/shenwei356/kmers
github.com/twotwotwo/sorts
crypto/rc4
crypto
reflect
bufio
net/http/internal/ascii
regexp/syntax
github.com/twotwotwo/sorts/sortutil
github.com/shenwei356/util/stats
internal/syscall/execenv
internal/syscall/unix
time
regexp
context
io/fs
crypto/internal/nistec
internal/poll
github.com/shenwei356/natsort
github.com/acarl005/stripansi
os
internal/fmtsort
encoding/binary
internal/godebug
golang.org/x/sys/cpu
io/ioutil
github.com/mattn/go-runewidth
path/filepath
fmt
vendor/golang.org/x/net/route
internal/intern
net/netip
encoding/base64
github.com/klauspost/compress/zstd/internal/xxhash
github.com/zeebo/wyhash
github.com/klauspost/compress/internal/snapref
crypto/internal/edwards25519/field
crypto/md5
crypto/cipher
vendor/golang.org/x/crypto/internal/poly1305
github.com/zeebo/xxh3
vendor/golang.org/x/crypto/curve25519/internal/field
github.com/clausecker/pospop
encoding/pem
os/exec
crypto/internal/edwards25519
crypto/internal/boring
crypto/des
vendor/golang.org/x/crypto/chacha20
crypto/sha256
crypto/hmac
crypto/sha512
crypto/aes
crypto/sha1
net
vendor/golang.org/x/crypto/chacha20poly1305
vendor/golang.org/x/crypto/hkdf
encoding/json
github.com/iafan/cwalk
encoding/hex
github.com/pkg/errors
log
github.com/shenwei356/util/byteutil
runtime/debug
github.com/ulikunitz/xz/internal/xlog
vendor/golang.org/x/net/http2/hpack
mime
net/url
vendor/golang.org/x/crypto/curve25519
github.com/klauspost/compress/fse
compress/flate
github.com/mitchellh/go-homedir
math/big
golang.org/x/sys/unix
vendor/golang.org/x/text/unicode/norm
mime/quotedprintable
net/http/internal
github.com/will-rowe/nthash
os/user
github.com/shenwei356/kmcp/kmcp/cmd/index
github.com/shenwei356/unik/v5
github.com/shenwei356/util/bytesize
vendor/golang.org/x/text/unicode/bidi
encoding/csv
github.com/shenwei356/bio/seq
github.com/shenwei356/util/stringutil
flag
text/template/parse
github.com/ulikunitz/xz/lzma
github.com/shenwei356/util/pathutil
github.com/tatsushid/go-prettytable
github.com/vbauerster/mpb/v5/decor
gopkg.in/yaml.v2
github.com/klauspost/compress/huff0
compress/gzip
github.com/klauspost/compress/flate
github.com/shenwei356/bio/sketches
vendor/golang.org/x/text/secure/bidirule
github.com/ulikunitz/xz
text/template
github.com/edsrzf/mmap-go
github.com/mattn/go-isatty
github.com/vbauerster/mpb/v5/cwriter
github.com/mattn/go-colorable
vendor/golang.org/x/net/idna
github.com/vbauerster/mpb/v5
crypto/rand
crypto/elliptic
github.com/dustin/go-humanize
crypto/internal/boring/bbig
crypto/dsa
encoding/asn1
crypto/ed25519
crypto/rsa
github.com/klauspost/compress/zstd
github.com/klauspost/pgzip
crypto/x509/pkix
vendor/golang.org/x/crypto/cryptobyte
crypto/ecdsa
vendor/golang.org/x/net/http/httpproxy
net/textproto
log/syslog
crypto/x509
github.com/spf13/pflag
github.com/shenwei356/go-logging
vendor/golang.org/x/net/http/httpguts
mime/multipart
crypto/tls
github.com/spf13/cobra
net/http/httptrace
net/http
github.com/shenwei356/xopen
github.com/shenwei356/breader
github.com/shenwei356/bio/taxdump
github.com/shenwei356/bio/seqio/fastx
github.com/shenwei356/util/cliutil
*** Error code 2

Stop.
make: stopped in /usr/ports/biology/kmcp