From nobody Mon Aug 08 17:56:39 2022 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4M1kRD0qw9z4YgF6 for ; Mon, 8 Aug 2022 17:56:40 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4M1kRC4kjrz3VYv for ; Mon, 8 Aug 2022 17:56:39 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy8.nyi.freebsd.org (beefy8.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:17]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4M1kRC3qGHz11N3 for ; Mon, 8 Aug 2022 17:56:39 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy8.nyi.freebsd.org (localhost [127.0.0.1]) by beefy8.nyi.freebsd.org (8.16.1/8.16.1) with ESMTP id 278HudcS016927 for ; Mon, 8 Aug 2022 17:56:39 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by beefy8.nyi.freebsd.org (8.16.1/8.16.1/Submit) id 278HudAH016926; Mon, 8 Aug 2022 17:56:39 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Mon, 8 Aug 2022 17:56:39 GMT From: pkg-fallout@FreeBSD.org Message-Id: <202208081756.278HudAH016926@beefy8.nyi.freebsd.org> To: pkg-fallout@FreeBSD.org Subject: [package - main-armv6-default][biology/ncbi-blast+] Failed for ncbi-blast+-2.12.0_7 in build ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1659981399; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc; bh=D/CyOyblCI0fzQoUjOO+WRX7xynzuVLnx7lGk3jzCZ4=; b=akgROzVDqPbpQSIx+ZE0VbaIg8D4FBBYXpl7PaTirGc/FmbbOB6kCkiyEQeblgyw0lrxB/ 2vhE86CriEubfv4oxgIAjyyAGy21pXn1jT28lsClCUcR+levz+xzQU06vkrG4cS7cYaQjf 0MFOIm2j8V7q/3y7WnB/AZ4JII5SuoOexCTNZgiNMUTBkkZAcokKIgRTlbTvnTQYPUB+a9 apJr2ESg7Co7Uf2HEG0OIUxG1oIqCx3hffFNQTz+1/sVbF02MnlpJ/xUMdDUmImYCq7iST cY8ipX67yXp3O9Y878SbV8zMzdSO1yWWwgt2gDNcdhz0IsCcv6gskLZYyvGPLQ== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1659981399; a=rsa-sha256; cv=none; b=ciiuXQLmibGc4Kgf65PiORDsZmGt2FBTMdyTgnQQIU/NhjqfTcbf36L4sEpyyJyTYT9Skz b+BUioO4DBCPz4x57t5UtJQXkJkfzkZ1LNfA9qLX/ra4NJO52o7IeGmFlnPojV03QmHW8G B86eUmw4wzipsxFTs2RH6z9keIbWz6zjv73hoidEBLxNQodnUREj6ADZpZLIabraYNqeQC kC6gh9pGOqqTcNLhr/r4vl+BFQ/F7aRACwVpL2c9mkPmqL4631D3nwxjFui1QnhUgTHILX HnafrHOR8WAUwL/ys1OQpWoKEIMTH7LxMxkLoCqCNKiLuvLP6IzYXs4hPO7+xw== ARC-Authentication-Results: i=1; mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jwb@FreeBSD.org Log URL: http://beefy8.nyi.freebsd.org/data/main-armv6-default/p659e8a4f5851_sa3d933cc4f/logs/ncbi-blast+-2.12.0_7.log Build URL: http://beefy8.nyi.freebsd.org/build.html?mastername=main-armv6-default&build=p659e8a4f5851_sa3d933cc4f Log: =>> Building biology/ncbi-blast+ build started at Mon Aug 8 17:18:28 UTC 2022 port directory: /usr/ports/biology/ncbi-blast+ package name: ncbi-blast+-2.12.0_7 building for: FreeBSD main-armv6-default-job-08 14.0-CURRENT FreeBSD 14.0-CURRENT 1400064 arm maintained by: jwb@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-21-g883afb07 Host OSVERSION: 1400063 Jail OSVERSION: 1400064 Job Id: 08 !!! Jail is newer than host. (Jail: 1400064, Host: 1400063) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/sh UNAME_p=armv6 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o OSVERSION=1400064 UNAME_v=FreeBSD 14.0-CURRENT 1400064 UNAME_r=14.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local QEMU_EMULATING=1 USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-21-g883afb07 MASTERMNT=/usr/local/poudriere/data/.m/main-armv6-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/main-armv6-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=main-armv6-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/main-armv6-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- AR="ar cr" --without-boost --libdir=/usr/local/lib/ncbi-tools++ --without-openmp --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work/.cache HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/ncbi-blast+/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288 --End CONFIGURE_ENV-- --MAKE_ENV-- PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work/.cache HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/ncbi-blast+/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -fstack-protector-strong -L/usr/local/lib " LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.32.1 PERL_VER=5.32 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.32 DOCSDIR="share/doc/ncbi-blast+" EXAMPLESDIR="share/examples/ncbi-blast+" DATADIR="share/ncbi-blast+" WWWDIR="www/ncbi-blast+" ETCDIR="etc/ncbi-blast+" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ncbi-blast+ DOCSDIR=/usr/local/share/doc/ncbi-blast+ EXAMPLESDIR=/usr/local/share/examples/ncbi-blast+ WWWDIR=/usr/local/www/ncbi-blast+ ETCDIR=/usr/local/etc/ncbi-blast+ --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=arm MACHINE_ARCH=armv6 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_9d218390=FreeBSD clang version 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc12386ae247c) Target: armv6-unknown-freebsd14.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _ALTCCVERSION_9d218390=none _CXXINTERNAL_9c45a5b1=FreeBSD clang version 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc12386ae247c) Target: armv6-unknown-freebsd14.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin "/nxb-bin/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_9d218390_58173849=yes CC_OUTPUT_9d218390_9bdba57c=yes CC_OUTPUT_9d218390_6a4fe7f5=yes CC_OUTPUT_9d218390_6bcac02b=yes CC_OUTPUT_9d218390_67d20829=yes CC_OUTPUT_9d218390_bfa62e83=yes CC_OUTPUT_9d218390_f0b4d593=yes CC_OUTPUT_9d218390_308abb44=yes CC_OUTPUT_9d218390_f00456e5=yes CC_OUTPUT_9d218390_65ad290d=yes CC_OUTPUT_9d218390_f2776b26=yes CC_OUTPUT_9d218390_b2657cc3=yes CC_OUTPUT_9d218390_380987f7=yes CC_OUTPUT_9d218390_160933ec=yes CC_OUTPUT_9d218390_fb62803b=yes _OBJC_CCVERSION_9d218390=FreeBSD clang version 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc12386ae247c) Target: armv6-unknown-freebsd14.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _OBJC_ALTCCVERSION_9d218390=none ARCH=armv6 OPSYS=FreeBSD _OSRELEASE=14.0-CURRENT OSREL=14.0 OSVERSION=1400064 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License PD accepted by the user =========================================================================== =================================================== ===> ncbi-blast+-2.12.0_7 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.18.4.pkg [main-armv6-default-job-08] Installing pkg-1.18.4... [main-armv6-default-job-08] Extracting pkg-1.18.4: .......... done ===> ncbi-blast+-2.12.0_7 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of ncbi-blast+-2.12.0_7 =========================================================================== =================================================== =========================================================================== =================================================== ===> License PD accepted by the user ===> Fetching all distfiles required by ncbi-blast+-2.12.0_7 for building =========================================================================== =================================================== ===> License PD accepted by the user ===> Fetching all distfiles required by ncbi-blast+-2.12.0_7 for building /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=65c21e25-173e-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/active_obj.cpp -o active_obj.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=65c21e25-173e-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/dbapi.cpp -o dbapi.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=65c21e25-173e-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver_mgr.cpp -o driver_mgr.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=65c21e25-173e-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/err_handler.cpp -o err_handler.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=65c21e25-173e-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/ds_impl.cpp -o ds_impl.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=65c21e25-173e-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/conn_impl.cpp -o conn_impl.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=65c21e25-173e-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/stmt_impl.cpp -o stmt_impl.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=65c21e25-173e-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/rs_impl.cpp -o rs_impl.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=65c21e25-173e-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/rsmeta_impl.cpp -o rsmeta_impl.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=65c21e25-173e-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/cstmt_impl.cpp -o cstmt_impl.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=65c21e25-173e-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/bytestreambuf.cpp -o bytestreambuf.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=65c21e25-173e-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/blobstream.cpp -o blobstream.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=65c21e25-173e-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/cursor_impl.cpp -o cursor_impl.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=65c21e25-173e-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/bulkinsert.cpp -o bulkinsert.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=65c21e25-173e-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/rw_impl.cpp -o rw_impl.o /bin/rm -f libdbapi.a .libdbapi.a.stamp ar cr libdbapi.a variant.o active_obj.o dbapi.o driver_mgr.o err_handler.o ds_impl.o conn_impl.o stmt_impl.o rs_impl.o rsmeta_impl.o cstmt_impl.o bytestreambuf.o blobstream.o cursor_impl.o bulkinsert.o rw_impl.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/lib/libdbapi.a /bin/ln -f .dbapi.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/status/.dbapi.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi' /usr/local/bin/gmake -C driver -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/util/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/util/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/util/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT util/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/util/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/ctlib/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/ctlib/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/ctlib/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT ctlib/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/ctlib/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/ftds95/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/ftds95/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/ftds95/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT ftds95/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds95/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/ftds100/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/ftds100/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/ftds100/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT ftds100/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds100/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/ftds-default/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/ftds-default/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/ftds-default/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT ftds-default/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/mysql/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/mysql/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/mysql/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT mysql/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/mysql/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/samples/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/samples/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/samples/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT samples/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/samples/Makefile /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver TMPL=dbapi_driver -w export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver TMPL=dbapi_driver -w all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/driver_mgr.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/pointer_pot.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/memory_store.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/types.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/public.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/interfaces.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/exception.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/parameters.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/numeric_convert.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/handle_stack.cpp. /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=65c21e25-173e-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/handle_stack.cpp -o handle_stack.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem 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-I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=65c21e25-173e-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp -o dbapi_object_convert.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=65c21e25-173e-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp -o dbapi_driver_convert.o /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=65c21e25-173e-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp -o dbapi_pool_balancer.o /bin/rm -f libdbapi_driver.a .libdbapi_driver.a.stamp ar cr libdbapi_driver.a handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi_driver.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/lib/libdbapi_driver.a /bin/ln -f .dbapi_driver.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/status/.dbapi_driver.dep /bin/rm -f libdbapi_driver-dll.so .libdbapi_driver-dll.so.stamp /nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -shared -o libdbapi_driver-dll.so -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fstack-protector-strong -L/usr/local/lib -O -fPIC handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/lib -lm -pthread /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver-dll.so /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi_driver-dll.so /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/lib/libdbapi_driver-dll.so /bin/ln -f .dbapi_driver-dll.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/status/.dbapi_driver-dll.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver' /usr/local/bin/gmake -C util -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/util' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/util' /usr/local/bin/gmake -C ctlib -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/ctlib' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/ctlib' /usr/local/bin/gmake -C ftds95 -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds95' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds95' /usr/local/bin/gmake -C ftds100 -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds100' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds100' /usr/local/bin/gmake -C ftds-default -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default' /usr/local/bin/gmake -C mysql -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/mysql' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/mysql' /usr/local/bin/gmake -C odbc -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' NOTE: Skipping project odbc due to unmet requirements: ODBC gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/odbc TMPL=ncbi_xdbapi_odbc -w mark-as-disabled gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /bin/echo 'Warning: non-existent sub-project "samples"' Warning: non-existent sub-project "samples" gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /usr/local/bin/gmake -C samples -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/samples' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/samples' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver' /usr/local/bin/gmake -C simple -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/simple' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/simple' /usr/local/bin/gmake -C lang_bind -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/lang_bind' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/lang_bind' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/test' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/test' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi' /usr/local/bin/gmake -C objects -w all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/objects' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/objects' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/objects/Makefile.sources builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/objects -w all Platform not defined for FreeBSD arm -- please fix me libunwind: personality function returned unknown result 5 libunwind: _Unwind_Resume - _Unwind_Resume() can't return gmake[6]: *** [/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/build-system/Makefile.module:42: omssa.files] Segmentation fault (core dumped) gmake[5]: *** [/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/objects/Makefile.sources:24: all] Error 2 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/objects' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/objects || exit 2; \ for i in omssa access biblio blast blastdb blastxml blastxml2 cdd cn3d docsum biotree entrez2 entrezgene featdef gbseq general id1 id2 insdseq macro medlars medline mim mla mmdb1 mmdb2 mmdb3 ncbimime objprt proj pub pubmed scoremat seq seqalign seqblock seqcode seqfeat seqloc seqsplit seqres seqset submit taxon1 taxon3 tinyseq pcsubstance pcassay remap homologene seqedit seqtable seqtest trackmgr gbproj valerr valid genesbyloc; do \ if test -f "$i/$i.asn"; then \ MAKE="/usr/local/bin/gmake -w"; export MAKE; \ ( cd $i && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/new_module.sh $i all; ) \ || case "-w" in *k*) ;; *) exit 2 ;; esac; \ else \ echo "Warning: $i/$i.asn not found (skipping)"; \ fi; \ done /usr/local/bin/gmake -w -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/objects/omssa' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src -m omssa.asn -M "objects/seq/seq.asn" -oA \ -oc omssa -or objects/omssa -odi -od omssa.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd omssa.dump \ gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/objects/omssa' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/objects' FAILED: src/objects/Makefile.sources gmake[4]: *** [/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/build-system/Makefile.meta_l:299: sources.usr] Error 1 gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/objects' gmake[3]: *** [/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/build-system/Makefile.meta_l:310: sources.usr.locked] Error 2 gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/objects' gmake[2]: *** [/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5 gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build' gmake[1]: *** [Makefile:24: all] Error 2 gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++' *** Error code 1 Stop. make: stopped in /usr/ports/biology/ncbi-blast+